Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G39230 AT3G54980 AT3G54980 |
| fragaria_vesca | FvH4_5g25890 FvH4_5g25890 FvH4_5g25890 |
| malus_domestica | MD04G1151000.v1.1 MD12G1164900.v1.1 |
| prunus_persica | Prupe.6G275900_v2.0.a1 Prupe.6G275900_v2.0.a1 |
| pyrus_communis | pycom04g13670 pycom12g15770 |
| rosa_chinensis | RchiOBHm_Chr4g0410561 RchiOBHm_Chr4g0410571 RchiOBHm_Chr5g0071501 RchiOBHm_Chr6g0264781 RchiOBHm_Chr7g0216391 RchiOBHm_Chr7g0216401 |
| rosa_laevigata | RLG00000002575 RLG00000002576 RLG00000002577 RLG00000031675 |
| rosa_multiflora | Rmu_sc0000692.1_g000003 Rmu_sc0000692.1_g000005 Rmu_sc0006325.1_g000046 |
| rosa_roxburghii | Rroxscaffold_159G00432870 Rroxscaffold_3G00243290 Rroxscaffold_4G00298080 |
| rosa_rugosa | Rorug01G0081600 Rorug07G0160300 |
| rosa_samantha | Rh2DG118300 Rh4CG174000 Rh4CG174100 Rh4CG174200 Rh7AG298700 Rh7AG298800 Rh7BG290300 Rh7BG290400 |
| rosa_wichuraiana | Rw7G025370 Rw7G025380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 109 |
| AccII | CGCG | 1 cut(s) | 435 |
| AciI | CCGC | 3 cut(s) | 46, 350, 401 |
| AcoI | YGGCCR | 1 cut(s) | 351 |
| AcvI | CACGTG | 1 cut(s) | 254 |
| AfaI | GTAC | 2 cut(s) | 268, 362 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 76 |
| AflIII | ACRYGT | 1 cut(s) | 237 |
| AgsI | TTSAA | 2 cut(s) | 197, 331 |
| AluBI | AGCT | 2 cut(s) | 117, 395 |
| AluI | AGCT | 2 cut(s) | 117, 395 |
| Alw26I | GTCTC | 1 cut(s) | 8 |
| AoxI | GGCC | 2 cut(s) | 67, 351 |
| ApeKI | GCWGC | 1 cut(s) | 392 |
| AspLEI | GCGC | 1 cut(s) | 110 |
| AspS9I | GGNCC | 1 cut(s) | 68 |
| AsuHPI | GGTGA | 1 cut(s) | 302 |
| BauI | CACGAG | 1 cut(s) | 18 |
| BbrPI | CACGTG | 1 cut(s) | 254 |
| BbvI | GCAGC | 1 cut(s) | 404 |
| BceAI | ACGGC | 1 cut(s) | 234 |
| BcoDI | GTCTC | 1 cut(s) | 8 |
| BfaI | CTAG | 1 cut(s) | 189 |
| BisI | GCNGC | 3 cut(s) | 351, 393, 402 |
| BlsI | GCNGC | 3 cut(s) | 352, 394, 403 |
| BmcAI | AGTACT | 1 cut(s) | 362 |
| BmgT120I | GGNCC | 1 cut(s) | 68 |
| BmsI | GCATC | 3 cut(s) | 133, 306, 388 |
| BsaAI | YACGTR | 1 cut(s) | 254 |
| BsaJI | CCNNGG | 1 cut(s) | 354 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 76 |
| Bse3DI | GCAATG | 1 cut(s) | 35 |
| BseDI | CCNNGG | 1 cut(s) | 354 |
| BseGI | GGATG | 1 cut(s) | 148 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 76 |
| BseMI | GCAATG | 1 cut(s) | 35 |
| BseRI | GAGGAG | 3 cut(s) | 63, 297, 371 |
| BseX3I | CGGCCG | 1 cut(s) | 351 |
| BseXI | GCAGC | 1 cut(s) | 404 |
| Bsh1236I | CGCG | 1 cut(s) | 435 |
| Bsh1285I | CGRYCG | 1 cut(s) | 354 |
| BshFI | GGCC | 2 cut(s) | 69, 353 |
| BsiEI | CGRYCG | 1 cut(s) | 354 |
| BsiSI | CCGG | 4 cut(s) | 57, 66, 77, 344 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 76 |
| BsmAI | GTCTC | 1 cut(s) | 8 |
| BsnI | GGCC | 2 cut(s) | 69, 353 |
| Bsp143I | GATC | 1 cut(s) | 91 |
| BspACI | CCGC | 3 cut(s) | 46, 350, 401 |
| BspANI | GGCC | 2 cut(s) | 69, 353 |
| BspFNI | CGCG | 1 cut(s) | 435 |
| BspHI | TCATGA | 1 cut(s) | 312 |
| BsrDI | GCAATG | 1 cut(s) | 35 |
| BssECI | CCNNGG | 1 cut(s) | 354 |
| BssMI | GATC | 1 cut(s) | 91 |
| BssSI | CACGAG | 1 cut(s) | 18 |
| Bst2BI | CACGAG | 1 cut(s) | 18 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 398 |
| BstBAI | YACGTR | 1 cut(s) | 254 |
| BstC8I | GCNNGC | 2 cut(s) | 27, 321 |
| BstF5I | GGATG | 1 cut(s) | 148 |
| BstFNI | CGCG | 1 cut(s) | 435 |
| BstHHI | GCGC | 1 cut(s) | 110 |
| BstKTI | GATC | 1 cut(s) | 94 |
| BstMAI | GTCTC | 1 cut(s) | 8 |
| BstMBI | GATC | 1 cut(s) | 91 |
| BstMCI | CGRYCG | 1 cut(s) | 354 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 66, 114, 398, 401 |
| BstNSI | RCATGY | 1 cut(s) | 241 |
| BstUI | CGCG | 1 cut(s) | 435 |
| BstV1I | GCAGC | 1 cut(s) | 404 |
| BstZI | CGGCCG | 1 cut(s) | 351 |
| BsuRI | GGCC | 2 cut(s) | 69, 353 |
| BtsCI | GGATG | 1 cut(s) | 148 |
| Cac8I | GCNNGC | 2 cut(s) | 27, 321 |
| CciI | TCATGA | 1 cut(s) | 312 |
| CfoI | GCGC | 1 cut(s) | 110 |
| Cfr13I | GGNCC | 1 cut(s) | 68 |
| Csp6I | GTAC | 2 cut(s) | 267, 361 |
| CviAII | CATG | 2 cut(s) | 238, 313 |
| CviJI | RGCY | 8 cut(s) | 6, 69, 117, 343, 353, 395, 412, 442 |
| CviKI_1 | RGCY | 8 cut(s) | 6, 69, 117, 343, 353, 395, 412, 442 |
| CviQI | GTAC | 2 cut(s) | 267, 361 |
| DpnI | GATC | 1 cut(s) | 93 |
| DpnII | GATC | 1 cut(s) | 91 |
| EaeI | YGGCCR | 1 cut(s) | 351 |
| EagI | CGGCCG | 1 cut(s) | 351 |
| EclXI | CGGCCG | 1 cut(s) | 351 |
| Eco52I | CGGCCG | 1 cut(s) | 351 |
| Eco72I | CACGTG | 1 cut(s) | 254 |
| FaeI | CATG | 2 cut(s) | 241, 316 |
| FaiI | YATR | 7 cut(s) | 120, 184, 186, 201, 239, 264, 314 |
| FatI | CATG | 2 cut(s) | 237, 312 |
| Fnu4HI | GCNGC | 3 cut(s) | 351, 393, 402 |
| FokI | GGATG | 1 cut(s) | 155 |
| Fsp4HI | GCNGC | 3 cut(s) | 351, 393, 402 |
| FspBI | CTAG | 1 cut(s) | 189 |
| FspI | TGCGCA | 1 cut(s) | 109 |
| GlaI | GCGC | 1 cut(s) | 109 |
| GluI | GCNGC | 3 cut(s) | 351, 393, 402 |
| HaeIII | GGCC | 2 cut(s) | 69, 353 |
| HapII | CCGG | 4 cut(s) | 57, 66, 77, 344 |
| HhaI | GCGC | 1 cut(s) | 110 |
| Hin1II | CATG | 2 cut(s) | 241, 316 |
| Hin6I | GCGC | 1 cut(s) | 108 |
| HinP1I | GCGC | 1 cut(s) | 108 |
| HinfI | GANTC | 5 cut(s) | 16, 62, 130, 423, 430 |
| HpaII | CCGG | 4 cut(s) | 57, 66, 77, 344 |
| HphI | GGTGA | 1 cut(s) | 302 |
| Hpy166II | GTNNAC | 1 cut(s) | 205 |
| Hpy188I | TCNGA | 1 cut(s) | 369 |
| Hpy188III | TCNNGA | 4 cut(s) | 11, 89, 313, 427 |
| Hpy8I | GTNNAC | 1 cut(s) | 205 |
| HpyAV | CCTTC | 2 cut(s) | 325, 364 |
| HpyCH4IV | ACGT | 2 cut(s) | 51, 253 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 66, 114, 398, 401 |
| HpySE526I | ACGT | 2 cut(s) | 51, 253 |
| Hsp92II | CATG | 2 cut(s) | 241, 316 |
| HspAI | GCGC | 1 cut(s) | 108 |
| Kzo9I | GATC | 1 cut(s) | 91 |
| LpnPI | CCDG | 7 cut(s) | 24, 70, 79, 86, 90, 357, 440 |
| Lsp1109I | GCAGC | 1 cut(s) | 404 |
| LweI | GCATC | 3 cut(s) | 133, 306, 388 |
| MaeI | CTAG | 1 cut(s) | 189 |
| MaeII | ACGT | 2 cut(s) | 51, 253 |
| MalI | GATC | 1 cut(s) | 93 |
| MboI | GATC | 1 cut(s) | 91 |
| MlyI | GAGTC | 3 cut(s) | 10, 56, 432 |
| MseI | TTAA | 2 cut(s) | 42, 159 |
| MslI | CAYNNNNRTG | 1 cut(s) | 212 |
| MspA1I | CMGCKG | 1 cut(s) | 395 |
| MspI | CCGG | 4 cut(s) | 57, 66, 77, 344 |
| MvnI | CGCG | 1 cut(s) | 435 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 66, 114, 398, 401 |
| NdeII | GATC | 1 cut(s) | 91 |
| NlaIII | CATG | 2 cut(s) | 241, 316 |
| NmeAIII | GCCGAG | 1 cut(s) | 379 |
| NsbI | TGCGCA | 1 cut(s) | 109 |
| NspI | RCATGY | 1 cut(s) | 241 |
| PagI | TCATGA | 1 cut(s) | 312 |
| PciI | ACATGT | 1 cut(s) | 237 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 57 |
| PfeI | GAWTC | 2 cut(s) | 130, 430 |
| PkrI | GCNGC | 3 cut(s) | 352, 394, 403 |
| PleI | GAGTC | 3 cut(s) | 10, 56, 431 |
| PmaCI | CACGTG | 1 cut(s) | 254 |
| PmlI | CACGTG | 1 cut(s) | 254 |
| PpsI | GAGTC | 3 cut(s) | 10, 56, 431 |
| Ppu21I | YACGTR | 1 cut(s) | 254 |
| PscI | ACATGT | 1 cut(s) | 237 |
| PspCI | CACGTG | 1 cut(s) | 254 |
| PspPI | GGNCC | 1 cut(s) | 68 |
| PvuII | CAGCTG | 1 cut(s) | 395 |
| RsaI | GTAC | 2 cut(s) | 268, 362 |
| RsaNI | GTAC | 2 cut(s) | 267, 361 |
| RseI | CAYNNNNRTG | 1 cut(s) | 212 |
| SaqAI | TTAA | 2 cut(s) | 42, 159 |
| SatI | GCNGC | 3 cut(s) | 351, 393, 402 |
| Sau3AI | GATC | 1 cut(s) | 91 |
| Sau96I | GGNCC | 1 cut(s) | 68 |
| ScaI | AGTACT | 1 cut(s) | 362 |
| SchI | GAGTC | 3 cut(s) | 10, 56, 432 |
| SetI | ASST | 5 cut(s) | 54, 119, 177, 256, 397 |
| SfaNI | GCATC | 3 cut(s) | 133, 306, 388 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 212 |
| SsiI | CCGC | 3 cut(s) | 46, 350, 401 |
| SspMI | CTAG | 1 cut(s) | 189 |
| TaiI | ACGT | 2 cut(s) | 54, 256 |
| TaqI | TCGA | 1 cut(s) | 133 |
| TatI | WGTACW | 1 cut(s) | 360 |
| TauI | GCSGC | 2 cut(s) | 353, 404 |
| TfiI | GAWTC | 2 cut(s) | 130, 430 |
| Tru1I | TTAA | 2 cut(s) | 42, 159 |
| Tru9I | TTAA | 2 cut(s) | 42, 159 |
| TseI | GCWGC | 1 cut(s) | 392 |
| XceI | RCATGY | 1 cut(s) | 241 |
| XspI | CTAG | 1 cut(s) | 189 |
| ZrmI | AGTACT | 1 cut(s) | 362 |