RchiOBHm_Chr7g0216391

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002613
Physical Location & Seq
Reverse (-)
33970073 .. 33973471
3399 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19362

Sequence Viewer

Length: 2487 bp
ATGAAATCTCACTTCCATTCCTCACTCCTCCCTTCACTCCGTCGCTTCTACCTCTTAAACCCCAAGCCCCTCTCCTCACAACCACCACCGCCGCCGCAAATCCATTCTCCGGCGAACCCAATTCCACAATCCTCCGATTCAACCCAAACCCACCTCCTCAACACTCTTCTTTCCCACAAGACCGATCCCAGTTCCGCTCTCGACCTCCTCAAACGCGCTGAAGCTCACCCAGGCGTTGTCCACGGCGCCGACACCGTCGCCGTCTTGCTTCACATCTTACTGGGCTTTCCAGAGACTCGCGGGCGCGCCAAGACATTGCTTAACCGCTACGTTTCCGGCGACTCCGGCCCTCCTCCGGCAGTCTTTCTCGATCGTTTGCTGGACTGCGCAAAGAGGTTCGGTTTTGATTTAGATTCAGATTCTCTGGTTTTCAGTTACTTGTTGAATAGCTATGTTAGAGCCAATCGAATAGGGGATGCTGTTGATTGCTTTAATAGAATGGTGGAGCTTGAGTTATATGCTGGTGTTGAATATATGAACATTGTGTTGACGGCATTGGTTAGGAGGAATATGTTTGAGGAAGCACGAGAGTTGTATGGTAAAATGGTTGAGAGAGGAGTTGGCGGTGATTGCGCCACTCTACATGTCATGATGCGTGCTTGTTTGAAGGAGGGGAAGCCGGAGGAGGCTGAGGAGTACTTTCGGAAGGCAAGGGGGAGAGGGATAGCAGCTGATGCCGCATTGTATGATGTGGCGATTGGGGCTGTTTGTAAGACTCCCGAATCGCGTTTGGCTTTGGTGTTGTTGGGTGAAATGAGAGAAATGGGGTGGGTTCCTTCCGGGCGTACGTATACTAGTGTGATTGGGGCGTGTGTGAAGCAGGGGAATATGGTGGAGGCGCTAAGGCTCAAGGATGAAATGGTGAGTTGTGGGGAATCGATTGATTTGGTTGTTGCTACAAGCTTGATGAAGGGTTATTGTGCGCAAGGGAAGTTGGATGCCGCTTTGGATTTGTTCAACATGATTATGCAGGATGGACTTATTCCTAACAGAATCACTTATGCAACTGTGATAGGATGTTGCTGTAAGAATGGGAACATGGAAAGGGCATATGAGCTTTACACCAAAATGAAACAGATGGGTATTTTGCCTGATGAGTTCATTGTGAATCATTTGGTGCGTGGATTTTTGAAATGTCGGTTACTTGAAGACGCGTCTAAGTTGTTTGACGAGGCAGTTGACTACGGTATTGCAAATGTCTTCTTGTACAATAATTTCTTAGCATGGCTTTGTAGGGAGGGTAAAGTAAGTGAAGCCCGTAGTTTATGGGATAAGATGATGCGTAATGGTGTGATACCTAATGCGGTTTCCTACAACAACATGATACATGGCTATTGCAGAATAGGGGATATGGATTGTGCAAATAATGAATTTTTGGAGATGACACAAAGGGGTTTGGAACCTACTGTTTTTACTTACTCTATTTTGATGAATGGGTATTTCAGGAACGGTAATGCCGAACGTGCTTTTAATGTCTTTGATGATATGGTGGATGCAAAGAAAATCCCCACAGGCTACACAATTAACATTGTCATTGATGGCCTATGCAAAGTTGGCCAGACAACTGTGGCAAGTGATCTTTTGAAGAAATTTCTTGAGAAGGGTTTTATTCCTGGATGTATGACTTATAATAGTATTATACATGGGTTTTCCAGGGAGGGTGCCATGAATTCTGCACTGAATGTTTATAGAGAAATGTGTGAAGGTGGAGTCACTCCAACTGTTATCACCTACACCAGCCTTATTAATGGGTTATGCAAAAGCAATAAGATAGATCTTGCTTTAGAAATGTGGCATGAAATGAAAACTAAGGGCATCAAAATGGATGTTACAGCATACTCTGCTATCATTGATGGGTTTTGCAAAAGGCGAGACATGAAAAGTGCCCGCGAACTTTTCTCAGAACTTCTGGAAGTTGGTTTATCTCCAAATACAGGTGTTTATACTAGCATGATTTGTGGCTTCCGGAATGTAAATGACATGGAAGCAGCTATTGAGTTACATAAGAAAATGATAACTGAAGGCATTCCATGTGATGTGAAAACGTACACTGCATTAATCAATGGACTGCTAAGAAAGGGTGATTTACAATCTGCATCAGATCTTTACTCAAAGATGCTTTCGAAGGGAATTACACCTGATATCAACACATATACAGTTCTAATAAATGGCCTTTGTTGCAAACGACAATTGGAGAAGGCACGCAAAACCTTGGAATACATGAATAGAAGGAGAATGACTGCTAGGGTTCATATTTATACTGCTTTGATTGTTGGGCACTTCAAGGAGGGGAATTTGCAAGAATCGTTTAGGTTGCACGATGAAATGCTAGACAAAGGCCTCATACCTGATGACATTACTTGTGATATTCTTATAAATGGAAAGTTCAAAGGCATAAGTGCTCTTCCGAGGACTTCAAGAGTCTAG

Protein Analysis

828

Amino Acids

92.39

Weight (kDa)

8.03

Isoelectric Point (pI)

31.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 179 - 223 5.9e-07 PPR repeat family
PPR PF01535 283 - 311 6.7e-06 PPR repeat
PPR_3 PF13812 302 - 364 1.7e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 315 - 363 2.6e-11 PPR repeat family
PPR_1 PF12854 345 - 378 1.1e-08 PPR repeat
PPR_2 PF13041 349 - 387 7e-10 PPR repeat family
PPR PF01535 352 - 382 2.8e-07 PPR repeat
PPR_long PF17177 408 - 540 5.5e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 419 - 458 3.4e-10 PPR repeat family
PPR_3 PF13812 442 - 499 5.4e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 449 - 475 2.6e-07 PPR repeat
PPR_2 PF13041 453 - 501 3.5e-16 PPR repeat family
PPR_3 PF13812 480 - 532 3.9e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 484 - 517 6e-11 PPR repeat
PPR PF01535 491 - 518 2.6e-06 PPR repeat
PPR_2 PF13041 495 - 537 1.6e-10 PPR repeat family
TPR_24 PF23276 537 - 655 1.9e-10 Fungal tetratrico peptide repeats
PPR_3 PF13812 547 - 603 3.4e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 554 - 586 3.8e-06 PPR repeat
PPR_2 PF13041 561 - 607 1.1e-16 PPR repeat family
PPR_long PF17177 569 - 715 4.5e-12 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 590 - 622 6.5e-12 PPR repeat
PPR_2 PF13041 593 - 642 3.6e-17 PPR repeat family
PPR PF01535 596 - 626 7.5e-09 PPR repeat
PPR_3 PF13812 618 - 672 1.1e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 624 - 655 9.3e-07 PPR repeat
PPR_2 PF13041 629 - 675 2.9e-10 PPR repeat family
PPR_2 PF13041 663 - 711 1.8e-11 PPR repeat family
PPR_3 PF13812 688 - 743 6.8e-09 Pentatricopeptide repeat domain
PPR PF01535 702 - 731 5.2e-06 PPR repeat
PPR_2 PF13041 702 - 746 7.8e-16 PPR repeat family
PPR_1 PF12854 729 - 761 7.2e-08 PPR repeat
PPR_2 PF13041 770 - 814 5.4e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1689, 2435
Acc16I TGCGCA 2 cut(s) 388, 984
AccB1I GGYRCC 2 cut(s) 245, 1721
AccBSI CCGCTC 1 cut(s) 197
AccI GTMKAC 1 cut(s) 851
AccII CGCG 6 cut(s) 216, 300, 306, 787, 1214, 1950
AccIII TCCGGA 1 cut(s) 2025
AclWI GGATC 1 cut(s) 179
AcoI YGGCCR 1 cut(s) 1615
AcsI RAATTY 4 cut(s) 1430, 1649, 1729, 2353
AcuI CTGAAG 2 cut(s) 240, 2100
AcyI GRCGYC 1 cut(s) 246
AfaI GTAC 4 cut(s) 698, 847, 1268, 2108
AfiI CCNNNNNNNGG 3 cut(s) 109, 355, 1994
AflIII ACRYGT 2 cut(s) 643, 1212
AhlI ACTAGT 1 cut(s) 854
AjnI CCWGG 3 cut(s) 229, 1672, 1712
AluBI AGCT 7 cut(s) 224, 450, 508, 731, 963, 1117, 2051
AluI AGCT 7 cut(s) 224, 450, 508, 731, 963, 1117, 2051
Alw21I GWGCWC 1 cut(s) 2464
Alw26I GTCTC 2 cut(s) 287, 1926
AlwI GGATC 1 cut(s) 179
Aor13HI TCCGGA 1 cut(s) 2025
AoxI GGCC 5 cut(s) 346, 1600, 1615, 2230, 2398
ApeKI GCWGC 2 cut(s) 728, 2048
ApoI RAATTY 4 cut(s) 1430, 1649, 1729, 2353
AscI GGCGCGCC 1 cut(s) 304
AseI ATTAAT 2 cut(s) 1806, 2117
Asp700I GAANNNNTTC 1 cut(s) 2085
AspLEI GCGC 8 cut(s) 218, 248, 306, 308, 389, 635, 901, 985
AspS9I GGNCC 1 cut(s) 347
AsuC2I CCSGG 1 cut(s) 841
AsuHPI GGTGA 6 cut(s) 218, 638, 821, 934, 1780, 2153
AsuII TTCGAA 1 cut(s) 2183
BaeGI GKGCMC 2 cut(s) 1948, 2340
BalI TGGCCA 1 cut(s) 1617
BanI GGYRCC 2 cut(s) 245, 1721
BauI CACGAG 1 cut(s) 585
BbsI GAAGAC 2 cut(s) 1215, 1252
Bbv12I GWGCWC 1 cut(s) 2464
BbvCI CCTCAGC 1 cut(s) 690
BbvI GCAGC 2 cut(s) 740, 2060
BccI CCATC 4 cut(s) 1028, 1132, 1592, 1907
BceAI ACGGC 3 cut(s) 245, 259, 567
BciT130I CCWGG 3 cut(s) 231, 1674, 1714
BcnI CCSGG 1 cut(s) 841
BcoDI GTCTC 2 cut(s) 287, 1926
BcuI ACTAGT 1 cut(s) 854
BfaI CTAG 5 cut(s) 855, 2007, 2304, 2390, 2485
BfoI RGCGCY 2 cut(s) 249, 902
BglII AGATCT 2 cut(s) 1834, 2161
BisI GCNGC 6 cut(s) 92, 95, 729, 738, 1002, 2049
BlsI GCNGC 6 cut(s) 93, 96, 730, 739, 1003, 2050
BmcAI AGTACT 1 cut(s) 698
Bme1390I CCNGG 4 cut(s) 231, 841, 1674, 1714
BmgT120I GGNCC 1 cut(s) 347
BmiI GGNNCC 4 cut(s) 247, 834, 1461, 1723
BmrFI CCNGG 4 cut(s) 231, 841, 1674, 1714
BmrI ACTGGG 2 cut(s) 183, 290
BmsI GCATC 9 cut(s) 466, 642, 724, 988, 1329, 1543, 1884, 2165, 2166
BmuI ACTGGG 2 cut(s) 183, 290
BpiI GAAGAC 2 cut(s) 1215, 1252
Bpu10I CCTNAGC 2 cut(s) 690, 902
Bpu14I TTCGAA 1 cut(s) 2183
BpuEI CTTGAG 3 cut(s) 530, 893, 1676
BpuMI CCSGG 1 cut(s) 841
Bsa29I ATCGAT 1 cut(s) 938
BsaAI YACGTR 1 cut(s) 849
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 5 cut(s) 229, 241, 1713, 2271, 2468
BsaWI WCCGGW 1 cut(s) 2025
BsaXI ACNNNNNCTCC 2 cut(s) 497, 527
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 355, 1994
Bse1I ACTGG 2 cut(s) 189, 285
Bse3DI GCAATG 1 cut(s) 314
BseAI TCCGGA 1 cut(s) 2025
BseBI CCWGG 3 cut(s) 231, 1674, 1714
BseCI ATCGAT 1 cut(s) 938
BseDI CCNNGG 5 cut(s) 229, 241, 1713, 2271, 2468
BseGI GGATG 8 cut(s) 481, 919, 1003, 1039, 1082, 1558, 1682, 1891
BseLI CCNNNNNNNGG 3 cut(s) 109, 355, 1994
BseMI GCAATG 1 cut(s) 314
BseMII CTCAG 2 cut(s) 681, 1974
BseNI ACTGG 2 cut(s) 189, 285
BsePI GCGCGC 1 cut(s) 304
BseRI GAGGAG 8 cut(s) 17, 64, 146, 197, 342, 630, 698, 707
BseSI GKGCMC 2 cut(s) 1948, 2340
BseXI GCAGC 2 cut(s) 740, 2060
BsgI GTGCAG 1 cut(s) 1719
Bsh1236I CGCG 6 cut(s) 216, 300, 306, 787, 1214, 1950
Bsh1285I CGRYCG 1 cut(s) 373
BshFI GGCC 5 cut(s) 348, 1602, 1617, 2232, 2400
BshNI GGYRCC 2 cut(s) 245, 1721
BshVI ATCGAT 1 cut(s) 938
BsiEI CGRYCG 1 cut(s) 373
BsiHKAI GWGCWC 1 cut(s) 2464
BsiSI CCGG 7 cut(s) 110, 336, 345, 356, 680, 840, 2026
BsiWI CGTACG 1 cut(s) 845
BslI CCNNNNNNNGG 3 cut(s) 109, 355, 1994
BsmAI GTCTC 2 cut(s) 287, 1926
BsmI GAATGC 1 cut(s) 2085
BsnI GGCC 5 cut(s) 348, 1602, 1617, 2232, 2400
Bsp119I TTCGAA 1 cut(s) 2183
Bsp1286I GDGCHC 3 cut(s) 1948, 2340, 2464
Bsp13I TCCGGA 1 cut(s) 2025
Bsp1407I TGTACA 1 cut(s) 1266
Bsp143I GATC 5 cut(s) 184, 370, 1636, 1834, 2161
BspANI GGCC 5 cut(s) 348, 1602, 1617, 2232, 2400
BspCNI CTCAG 2 cut(s) 682, 1973
BspDI ATCGAT 1 cut(s) 938
BspEI TCCGGA 1 cut(s) 2025
BspFNI CGCG 6 cut(s) 216, 300, 306, 787, 1214, 1950
BspHI TCATGA 1 cut(s) 648
BspLI GGNNCC 4 cut(s) 247, 834, 1461, 1723
BspPI GGATC 1 cut(s) 179
BspQI GCTCTTC 1 cut(s) 2469
BspT104I TTCGAA 1 cut(s) 2183
BspT107I GGYRCC 2 cut(s) 245, 1721
BsrBI CCGCTC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 314
BsrGI TGTACA 1 cut(s) 1266
BsrI ACTGG 2 cut(s) 189, 285
BssECI CCNNGG 5 cut(s) 229, 241, 1713, 2271, 2468
BssHII GCGCGC 1 cut(s) 304
BssMI GATC 5 cut(s) 184, 370, 1636, 1834, 2161
BssNAI GTATAC 1 cut(s) 852
BssNI GRCGYC 1 cut(s) 246
BssSI CACGAG 1 cut(s) 585
BssT1I CCWWGG 1 cut(s) 2271
Bst1107I GTATAC 1 cut(s) 852
Bst2BI CACGAG 1 cut(s) 585
Bst2UI CCWGG 3 cut(s) 231, 1674, 1714
Bst4CI ACNGT 8 cut(s) 256, 1069, 1247, 1468, 1511, 1627, 1783, 2218
Bst6I CTCTTC 2 cut(s) 171, 2469
BstACI GRCGYC 1 cut(s) 246
BstAPI GCANNNNNTGC 2 cut(s) 734, 1901
BstAUI TGTACA 1 cut(s) 1266
BstBAI YACGTR 1 cut(s) 849
BstBI TTCGAA 1 cut(s) 2183
BstC8I GCNNGC 5 cut(s) 302, 306, 657, 1948, 2263
BstDEI CTNAG 7 cut(s) 690, 902, 1218, 1279, 1869, 1960, 2132
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 8 cut(s) 481, 919, 1003, 1039, 1082, 1558, 1682, 1891
BstFNI CGCG 6 cut(s) 216, 300, 306, 787, 1214, 1950
BstH2I RGCGCY 2 cut(s) 249, 902
BstHHI GCGC 8 cut(s) 218, 248, 306, 308, 389, 635, 901, 985
BstKTI GATC 5 cut(s) 187, 373, 1639, 1837, 2164
BstMAI GTCTC 2 cut(s) 287, 1926
BstMBI GATC 5 cut(s) 184, 370, 1636, 1834, 2161
BstMCI CGRYCG 1 cut(s) 373
BstMWI GCNNNNNNNGC 9 cut(s) 345, 630, 734, 737, 761, 1523, 1614, 1901, 2238
BstNI CCWGG 3 cut(s) 231, 1674, 1714
BstNSI RCATGY 1 cut(s) 647
BstSCI CCNGG 4 cut(s) 229, 839, 1672, 1712
BstSLI GKGCMC 2 cut(s) 1948, 2340
BstSNI TACGTA 1 cut(s) 849
BstUI CGCG 6 cut(s) 216, 300, 306, 787, 1214, 1950
BstV1I GCAGC 2 cut(s) 740, 2060
BstV2I GAAGAC 2 cut(s) 1215, 1252
BstX2I RGATCY 2 cut(s) 1834, 2161
BstYI RGATCY 2 cut(s) 1834, 2161
BstZ17I GTATAC 1 cut(s) 852
Bsu15I ATCGAT 1 cut(s) 938
BsuRI GGCC 5 cut(s) 348, 1602, 1617, 2232, 2400
BsuTUI ATCGAT 1 cut(s) 938
BtgI CCRYGG 1 cut(s) 241
BtsCI GGATG 8 cut(s) 481, 919, 1003, 1039, 1082, 1558, 1682, 1891
BtsI GCAGTG 1 cut(s) 2109
BtsIMutI CAGTG 2 cut(s) 1736, 2109
Cac8I GCNNGC 5 cut(s) 302, 306, 657, 1948, 2263
CciI TCATGA 1 cut(s) 648
CfoI GCGC 8 cut(s) 218, 248, 306, 308, 389, 635, 901, 985
Cfr13I GGNCC 1 cut(s) 347
ClaI ATCGAT 1 cut(s) 938
CseI GACGC 2 cut(s) 1203, 1220
Csp6I GTAC 4 cut(s) 697, 846, 1267, 2107
CviQI GTAC 4 cut(s) 697, 846, 1267, 2107
DdeI CTNAG 7 cut(s) 690, 902, 1218, 1279, 1869, 1960, 2132
DinI GGCGCC 1 cut(s) 247
DpnI GATC 5 cut(s) 186, 372, 1638, 1836, 2163
DpnII GATC 5 cut(s) 184, 370, 1636, 1834, 2161
EaeI YGGCCR 1 cut(s) 1615
Eam1104I CTCTTC 2 cut(s) 171, 2469
EarI CTCTTC 2 cut(s) 171, 2469
Eco105I TACGTA 1 cut(s) 849
Eco130I CCWWGG 1 cut(s) 2271
Eco147I AGGCCT 1 cut(s) 2400
Eco32I GATATC 1 cut(s) 2203
Eco57I CTGAAG 2 cut(s) 240, 2100
EcoRI GAATTC 1 cut(s) 1729
EcoRII CCWGG 3 cut(s) 229, 1672, 1712
EcoRV GATATC 1 cut(s) 2203
EcoT14I CCWWGG 1 cut(s) 2271
EgeI GGCGCC 1 cut(s) 247
EheI GGCGCC 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 2271
FauI CCCGC 2 cut(s) 293, 1955
FauNDI CATATG 1 cut(s) 1111
FblI GTMKAC 1 cut(s) 851
Fnu4HI GCNGC 6 cut(s) 92, 95, 729, 738, 1002, 2049
FokI GGATG 8 cut(s) 488, 926, 1010, 1046, 1089, 1565, 1689, 1898
Fsp4HI GCNGC 6 cut(s) 92, 95, 729, 738, 1002, 2049
FspBI CTAG 5 cut(s) 855, 2007, 2304, 2390, 2485
FspI TGCGCA 2 cut(s) 388, 984
GlaI GCGC 8 cut(s) 217, 247, 305, 307, 388, 634, 900, 984
GluI GCNGC 6 cut(s) 92, 95, 729, 738, 1002, 2049
HaeII RGCGCY 2 cut(s) 249, 902
HaeIII GGCC 5 cut(s) 348, 1602, 1617, 2232, 2400
HapII CCGG 7 cut(s) 110, 336, 345, 356, 680, 840, 2026
HgaI GACGC 2 cut(s) 1203, 1220
HhaI GCGC 8 cut(s) 218, 248, 306, 308, 389, 635, 901, 985
Hin1I GRCGYC 1 cut(s) 246
Hin6I GCGC 8 cut(s) 216, 246, 304, 306, 387, 633, 899, 983
HinP1I GCGC 8 cut(s) 216, 246, 304, 306, 387, 633, 899, 983
HincII GTYRAC 2 cut(s) 549, 1240
HindII GTYRAC 2 cut(s) 549, 1240
HindIII AAGCTT 1 cut(s) 961
HpaII CCGG 7 cut(s) 110, 336, 345, 356, 680, 840, 2026
HphI GGTGA 6 cut(s) 218, 638, 821, 934, 1780, 2153
Hpy166II GTNNAC 5 cut(s) 241, 549, 852, 1240, 2109
Hpy188I TCNGA 6 cut(s) 136, 418, 705, 1963, 2161, 2469
Hpy8I GTNNAC 5 cut(s) 241, 549, 852, 1240, 2109
Hpy99I CGWCG 2 cut(s) 45, 260
HpyCH4III ACNGT 8 cut(s) 256, 1069, 1247, 1468, 1511, 1627, 1783, 2218
HpyCH4IV ACGT 4 cut(s) 330, 848, 1522, 2105
HpyF10VI GCNNNNNNNGC 9 cut(s) 345, 630, 734, 737, 761, 1523, 1614, 1901, 2238
HpyF3I CTNAG 7 cut(s) 690, 902, 1218, 1279, 1869, 1960, 2132
HpySE526I ACGT 4 cut(s) 330, 848, 1522, 2105
Hsp92I GRCGYC 1 cut(s) 246
HspAI GCGC 8 cut(s) 216, 246, 304, 306, 387, 633, 899, 983
KasI GGCGCC 1 cut(s) 245
Kpn2I TCCGGA 1 cut(s) 2025
Kzo9I GATC 5 cut(s) 184, 370, 1636, 1834, 2161
LguI GCTCTTC 1 cut(s) 2469
LmnI GCTCC 1 cut(s) 505
Lsp1109I GCAGC 2 cut(s) 740, 2060
LweI GCATC 9 cut(s) 466, 642, 724, 988, 1329, 1543, 1884, 2165, 2166
MaeI CTAG 5 cut(s) 855, 2007, 2304, 2390, 2485
MaeII ACGT 4 cut(s) 330, 848, 1522, 2105
MaeIII GTNAC 5 cut(s) 434, 1200, 1771, 1888, 2058
MalI GATC 5 cut(s) 186, 372, 1638, 1836, 2163
MbiI CCGCTC 1 cut(s) 197
MboI GATC 5 cut(s) 184, 370, 1636, 1834, 2161
MboII GAAGA 5 cut(s) 158, 1220, 1252, 1657, 2456
MfeI CAATTG 1 cut(s) 2249
MflI RGATCY 2 cut(s) 1834, 2161
MhlI GDGCHC 3 cut(s) 1948, 2340, 2464
MlsI TGGCCA 1 cut(s) 1617
MluCI AATT 9 cut(s) 120, 1273, 1430, 1581, 1649, 1729, 2190, 2249, 2353
MluI ACGCGT 1 cut(s) 1212
MluNI TGGCCA 1 cut(s) 1617
Mly113I GGCGCC 1 cut(s) 246
MlyI GAGTC 4 cut(s) 289, 335, 769, 1779
MmeI TCCRAC 2 cut(s) 975, 1802
Mox20I TGGCCA 1 cut(s) 1617
MroI TCCGGA 1 cut(s) 2025
MroXI GAANNNNTTC 1 cut(s) 2085
MscI TGGCCA 1 cut(s) 1617
MseI TTAA 7 cut(s) 56, 321, 492, 1530, 1584, 1806, 2117
MslI CAYNNNNRTG 3 cut(s) 1025, 1127, 1880
Msp20I TGGCCA 1 cut(s) 1617
MspA1I CMGCKG 1 cut(s) 731
MspI CCGG 7 cut(s) 110, 336, 345, 356, 680, 840, 2026
MspR9I CCNGG 4 cut(s) 231, 841, 1674, 1714
MunI CAATTG 1 cut(s) 2249
Mva1269I GAATGC 1 cut(s) 2085
MvaI CCWGG 3 cut(s) 231, 1674, 1714
MvnI CGCG 6 cut(s) 216, 300, 306, 787, 1214, 1950
MwoI GCNNNNNNNGC 9 cut(s) 345, 630, 734, 737, 761, 1523, 1614, 1901, 2238
NarI GGCGCC 1 cut(s) 246
NciI CCSGG 1 cut(s) 841
NdeI CATATG 1 cut(s) 1111
NdeII GATC 5 cut(s) 184, 370, 1636, 1834, 2161
NlaIV GGNNCC 4 cut(s) 247, 834, 1461, 1723
NmuCI GTSAC 1 cut(s) 1771
NsbI TGCGCA 2 cut(s) 388, 984
NspI RCATGY 1 cut(s) 647
NspV TTCGAA 1 cut(s) 2183
PagI TCATGA 1 cut(s) 648
PalAI GGCGCGCC 1 cut(s) 304
PauI GCGCGC 1 cut(s) 304
PceI AGGCCT 1 cut(s) 2400
PciI ACATGT 1 cut(s) 643
PciSI GCTCTTC 1 cut(s) 2469
PcsI WCGNNNNNNNCGW 2 cut(s) 336, 1515
PctI GAATGC 1 cut(s) 2085
PdmI GAANNNNTTC 1 cut(s) 2085
PfeI GAWTC 8 cut(s) 137, 413, 419, 782, 935, 1053, 1168, 2363
Pfl23II CGTACG 1 cut(s) 845
PflFI GACNNNGTC 1 cut(s) 254
PfoI TCCNGGA 1 cut(s) 1672
PkrI GCNGC 6 cut(s) 93, 96, 730, 739, 1003, 2050
Ple19I CGATCG 1 cut(s) 373
PleI GAGTC 4 cut(s) 289, 335, 769, 1778
PluTI GGCGCC 1 cut(s) 249
PpsI GAGTC 4 cut(s) 289, 335, 769, 1778
Ppu21I YACGTR 1 cut(s) 849
PscI ACATGT 1 cut(s) 643
PshBI ATTAAT 2 cut(s) 1806, 2117
PsiI TTATAA 2 cut(s) 1689, 2435
Psp6I CCWGG 3 cut(s) 229, 1672, 1712
PspGI CCWGG 3 cut(s) 229, 1672, 1712
PspLI CGTACG 1 cut(s) 845
PspN4I GGNNCC 4 cut(s) 247, 834, 1461, 1723
PspPI GGNCC 1 cut(s) 347
PsuI RGATCY 2 cut(s) 1834, 2161
PsyI GACNNNGTC 1 cut(s) 254
PteI GCGCGC 1 cut(s) 304
PvuI CGATCG 1 cut(s) 373
PvuII CAGCTG 1 cut(s) 731
RsaI GTAC 4 cut(s) 698, 847, 1268, 2108
RsaNI GTAC 4 cut(s) 697, 846, 1267, 2107
RseI CAYNNNNRTG 3 cut(s) 1025, 1127, 1880
SapI GCTCTTC 1 cut(s) 2469
SaqAI TTAA 7 cut(s) 56, 321, 492, 1530, 1584, 1806, 2117
SatI GCNGC 6 cut(s) 92, 95, 729, 738, 1002, 2049
Sau3AI GATC 5 cut(s) 184, 370, 1636, 1834, 2161
Sau96I GGNCC 1 cut(s) 347
ScaI AGTACT 1 cut(s) 698
SchI GAGTC 4 cut(s) 289, 335, 769, 1779
ScrFI CCNGG 4 cut(s) 231, 841, 1674, 1714
SduI GDGCHC 3 cut(s) 1948, 2340, 2464
SfaNI GCATC 9 cut(s) 466, 642, 724, 988, 1329, 1543, 1884, 2165, 2166
SfoI GGCGCC 1 cut(s) 247
SfuI TTCGAA 1 cut(s) 2183
SgsI GGCGCGCC 1 cut(s) 304
SmiMI CAYNNNNRTG 3 cut(s) 1025, 1127, 1880
SmlI CTYRAG 3 cut(s) 509, 908, 1655
SmoI CTYRAG 3 cut(s) 509, 908, 1655
SnaBI TACGTA 1 cut(s) 849
SpeI ACTAGT 1 cut(s) 854
Sse9I AATT 9 cut(s) 120, 1273, 1430, 1581, 1649, 1729, 2190, 2249, 2353
SseBI AGGCCT 1 cut(s) 2400
SspDI GGCGCC 1 cut(s) 245
SspMI CTAG 5 cut(s) 855, 2007, 2304, 2390, 2485
StuI AGGCCT 1 cut(s) 2400
StyD4I CCNGG 4 cut(s) 229, 839, 1672, 1712
StyI CCWWGG 1 cut(s) 2271
TaaI ACNGT 8 cut(s) 256, 1069, 1247, 1468, 1511, 1627, 1783, 2218
TaiI ACGT 4 cut(s) 333, 851, 1525, 2108
TaqI TCGA 5 cut(s) 201, 369, 466, 938, 2183
TaqII GACCGA 1 cut(s) 197
TasI AATT 9 cut(s) 120, 1273, 1430, 1581, 1649, 1729, 2190, 2249, 2353
TatI WGTACW 2 cut(s) 696, 1266
TauI GCSGC 4 cut(s) 94, 97, 740, 1004
TfiI GAWTC 8 cut(s) 137, 413, 419, 782, 935, 1053, 1168, 2363
Tru1I TTAA 7 cut(s) 56, 321, 492, 1530, 1584, 1806, 2117
Tru9I TTAA 7 cut(s) 56, 321, 492, 1530, 1584, 1806, 2117
TscAI CASTG 2 cut(s) 1743, 2116
TseFI GTSAC 1 cut(s) 1771
TseI GCWGC 2 cut(s) 728, 2048
Tsp45I GTSAC 1 cut(s) 1771
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 2 cut(s) 1743, 2116
Tth111I GACNNNGTC 1 cut(s) 254
VspI ATTAAT 2 cut(s) 1806, 2117
XapI RAATTY 4 cut(s) 1430, 1649, 1729, 2353
XceI RCATGY 1 cut(s) 647
XmiI GTMKAC 1 cut(s) 851
XmnI GAANNNNTTC 1 cut(s) 2085
XspI CTAG 5 cut(s) 855, 2007, 2304, 2390, 2485
ZrmI AGTACT 1 cut(s) 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.