FvH4_6g00880

Cytochrome p450

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
504184 .. 506951
2768 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00880.t1

Sequence Viewer

Length: 1539 bp
ATGGAGCTTGAAAAGATGTTCATCTCCTTTGTGTTGCTTGCTTTTCTGGGTCTGTTTGCTTGTCTATACAATGCCCTGGTGACGAAGCCGGAGAAGCTTAGATCAATTCTGAGGAAGCAAGGCATCGTTGGACCGCCTCCTACCTTCTTACTCGGAAATATCAAGGAGATCAAGAAGGCTCAGAAGTCCCCGACCCAAGACGCTACCACTACTCAACTCCTAACCTCCCACAACCTTGCTGCTACTCTCTTTCCCTTTTTTGAGGAATGGAGAAGCAAATACGGTAAAGTGTTCAACTTCTCCCTTGGCAACACACAAATATTGTACGTGAATGAATCTGAAGCTGTGAGAGAGATAACTACATGCACATCTTTGGACTTGGGGAAACCTACCTATCAGTTCAAAGAGCGAGGCCCTTTGCTTGGCCAAGGCATTCTAACGTCAAATGGGGCTGTTTGGGCACATCAGAGAAAAGTTCTTGCTCCACAATTATACATGGACAAGGTTAAGGGGATGATAAATCTTATTACCGAATCTGCGATTACATTGCAAGAGTCATGGAAGAAAAGGATTGATGAAGAGGGTGGAGTGGCAGATATCAATATTGATGAGGACATGAGAAGCTTCTCAGGAGATGTTATCTCAAGAGCTTGTTTTGGAAGCAACTTTGCCAGTGGTCAAGTAATTTTTCACAAACTAAGAGCTCTTCAAGAGGCCATGTCTAGGAAATGCTTAGCTACAGGGATTCCTGGAATGAGGCATCTTCCTACAAAGAACAGAAGAGAAGCATGGGGACTAGAAAAAGAGGTTCGCAATTTGATACTCAAAGTTGTGAAGCAGAGAGTGGAAGGTGTACATGAGAAGGACCTGTTGCAAATGGTTCTTGAGAGTACCCAAAACAGTGACCTAAGCCAAGCGGAAACTGATCGGTTCATTGTTGATAACTGCAAGAACATCTACTTGGCTGGTTATGAGACCACTGCAGTCTCTGCCACATGGTTGCTCATGTTGTTGGCTTCAAATCAGGAATGGCAAGAACGCGTCCGTGCCGAGGTTCTTCAAGTTTGTGGTGGCCAGATTCCAGATGCTGACATGCTCCGTAAGATGAAACAGCTAACAATGGTGATTCATGAATCGTTGCGACTCTATCCACCGGTGTCTGTGGTATCAAGGGAGGCCTTCATGGACATGAAATTTGCGGGCATACATGTTCCCAAGGGTGTGAACCTATGGGTTATGGTACTGACATTGCACACTGACCCTGAAGTATGGGGACCTGATGCCTACAAGTTCAACCCAGAAAGATTTGCAAATGGAATTACAGGTGCTTGTAAGCTTCCACACTTGTACATGCCATTTGGGGTTGGACCAAGAGTGTGTCTTGGGCAGAACTTGGCCATGATTGAGCTCAAAATACTAGTAGCTCTTATTCTCTCTAAATTTTCTGTCTCCCTATCTTCCAAGTATTGCCACAAACCAGCAATAAGGTTGGTGATTGAGCCTGAGCAGGGAGTTAATCTCTTAGTGAAGAAGTTGTGA

Protein Analysis

513

Amino Acids

57.56

Weight (kDa)

9.08

Isoelectric Point (pI)

43.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 82 - 493 2.7e-84 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1041
AciI CCGC 3 cut(s) 134, 917, 1199
AcoI YGGCCR 3 cut(s) 424, 1072, 1395
AcsI RAATTY 2 cut(s) 1193, 1439
AcuI CTGAAG 2 cut(s) 360, 1284
AfaI GTAC 5 cut(s) 326, 855, 892, 1242, 1349
AfiI CCNNNNNNNGG 4 cut(s) 422, 723, 1051, 1508
AflIII ACRYGT 2 cut(s) 1039, 1207
AgeI ACCGGT 1 cut(s) 1153
AgsI TTSAA 7 cut(s) 11, 295, 403, 710, 1020, 1061, 1294
AhlI ACTAGT 1 cut(s) 1417
AjnI CCWGG 2 cut(s) 75, 748
AjuI GAANNNNNNNTTGG 2 cut(s) 944, 976
Alw21I GWGCWC 2 cut(s) 706, 1410
Alw26I GTCTC 3 cut(s) 968, 991, 1453
AlwNI CAGNNNCTG 2 cut(s) 989, 1088
AoxI GGCC 6 cut(s) 412, 424, 714, 1072, 1176, 1395
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 2 cut(s) 1193, 1439
ArsI GACNNNNNNTTYG 2 cut(s) 1178, 1210
AsiGI ACCGGT 1 cut(s) 1153
AspS9I GGNCC 5 cut(s) 131, 413, 865, 1274, 1367
AsuHPI GGTGA 3 cut(s) 91, 1135, 1504
AvaII GGWCC 4 cut(s) 131, 865, 1274, 1367
BaeGI GKGCMC 1 cut(s) 463
BalI TGGCCA 3 cut(s) 426, 1074, 1397
BanII GRGCYC 2 cut(s) 706, 1410
Bbv12I GWGCWC 2 cut(s) 706, 1410
BbvI GCAGC 1 cut(s) 226
BcgI CGANNNNNNTGC 2 cut(s) 529, 563
BciT130I CCWGG 2 cut(s) 77, 750
BcoDI GTCTC 3 cut(s) 968, 991, 1453
BcuI ACTAGT 1 cut(s) 1417
BfaI CTAG 3 cut(s) 723, 797, 1418
BfmI CTRYAG 2 cut(s) 738, 981
BisI GCNGC 1 cut(s) 240
BlpI GCTNAGC 1 cut(s) 733
BlsI GCNGC 1 cut(s) 241
Bme1390I CCNGG 2 cut(s) 77, 750
Bme18I GGWCC 4 cut(s) 131, 865, 1274, 1367
BmgT120I GGNCC 5 cut(s) 131, 413, 865, 1274, 1367
BmiI GGNNCC 1 cut(s) 1275
BmrFI CCNGG 2 cut(s) 77, 750
BmsI GCATC 4 cut(s) 132, 769, 1075, 1270
BplI GAGNNNNNCTC 2 cut(s) 1503, 1535
Bpu10I CCTNAGC 2 cut(s) 908, 1503
Bpu1102I GCTNAGC 1 cut(s) 733
BpuEI CTTGAG 2 cut(s) 628, 905
BsaAI YACGTR 1 cut(s) 328
BsaBI GATNNNNATC 1 cut(s) 20
BsaI GGTCTC 1 cut(s) 968
BsaJI CCNNGG 5 cut(s) 75, 304, 427, 1050, 1215
BsaWI WCCGGW 1 cut(s) 1153
Bsc4I CCNNNNNNNGG 4 cut(s) 422, 723, 1051, 1508
Bse118I RCCGGY 1 cut(s) 1153
Bse1I ACTGG 1 cut(s) 672
Bse3DI GCAATG 2 cut(s) 545, 1247
Bse8I GATNNNNATC 1 cut(s) 20
BseBI CCWGG 2 cut(s) 77, 750
BseDI CCNNGG 5 cut(s) 75, 304, 427, 1050, 1215
BseGI GGATG 1 cut(s) 519
BseJI GATNNNNATC 1 cut(s) 20
BseLI CCNNNNNNNGG 4 cut(s) 422, 723, 1051, 1508
BseMI GCAATG 2 cut(s) 545, 1247
BseMII CTCAG 4 cut(s) 101, 194, 642, 1494
BseNI ACTGG 1 cut(s) 672
BseSI GKGCMC 1 cut(s) 463
BseXI GCAGC 1 cut(s) 226
Bsh1236I CGCG 1 cut(s) 1041
BshFI GGCC 6 cut(s) 414, 426, 716, 1074, 1178, 1397
BshTI ACCGGT 1 cut(s) 1153
BsiHKAI GWGCWC 2 cut(s) 706, 1410
BsiSI CCGG 2 cut(s) 89, 1154
BslFI GGGAC 3 cut(s) 172, 807, 1287
BslI CCNNNNNNNGG 4 cut(s) 422, 723, 1051, 1508
BsmAI GTCTC 3 cut(s) 968, 991, 1453
BsmFI GGGAC 3 cut(s) 172, 807, 1287
BsmI GAATGC 1 cut(s) 432
BsnI GGCC 6 cut(s) 414, 426, 716, 1074, 1178, 1397
Bso31I GGTCTC 1 cut(s) 968
Bsp1286I GDGCHC 3 cut(s) 463, 706, 1410
Bsp1407I TGTACA 2 cut(s) 853, 1347
Bsp143I GATC 3 cut(s) 101, 168, 925
Bsp1720I GCTNAGC 1 cut(s) 733
BspACI CCGC 3 cut(s) 134, 917, 1199
BspANI GGCC 6 cut(s) 414, 426, 716, 1074, 1178, 1397
BspCNI CTCAG 4 cut(s) 102, 193, 641, 1495
BspFNI CGCG 1 cut(s) 1041
BspHI TCATGA 1 cut(s) 1129
BspLI GGNNCC 1 cut(s) 1275
BspMAI CTGCAG 1 cut(s) 985
BspQI GCTCTTC 1 cut(s) 711
BspTNI GGTCTC 1 cut(s) 968
BsrDI GCAATG 2 cut(s) 545, 1247
BsrFI RCCGGY 1 cut(s) 1153
BsrGI TGTACA 2 cut(s) 853, 1347
BsrI ACTGG 1 cut(s) 672
BssAI RCCGGY 1 cut(s) 1153
BssECI CCNNGG 5 cut(s) 75, 304, 427, 1050, 1215
BssMI GATC 3 cut(s) 101, 168, 925
BssT1I CCWWGG 3 cut(s) 304, 427, 1215
Bst2UI CCWGG 2 cut(s) 77, 750
Bst4CI ACNGT 2 cut(s) 284, 902
Bst6I CTCTTC 3 cut(s) 573, 711, 775
BstAPI GCANNNNNTGC 1 cut(s) 989
BstAUI TGTACA 2 cut(s) 853, 1347
BstBAI YACGTR 1 cut(s) 328
BstC8I GCNNGC 2 cut(s) 39, 1201
BstDEI CTNAG 9 cut(s) 98, 110, 180, 628, 698, 733, 908, 1503, 1522
BstF5I GGATG 1 cut(s) 519
BstFNI CGCG 1 cut(s) 1041
BstKTI GATC 3 cut(s) 104, 171, 928
BstMAI GTCTC 3 cut(s) 968, 991, 1453
BstMBI GATC 3 cut(s) 101, 168, 925
BstMWI GCNNNNNNNGC 3 cut(s) 94, 458, 989
BstNI CCWGG 2 cut(s) 77, 750
BstNSI RCATGY 4 cut(s) 366, 1096, 1211, 1354
BstSCI CCNGG 2 cut(s) 75, 748
BstSFI CTRYAG 2 cut(s) 738, 981
BstSLI GKGCMC 1 cut(s) 463
BstUI CGCG 1 cut(s) 1041
BstV1I GCAGC 1 cut(s) 226
BsuRI GGCC 6 cut(s) 414, 426, 716, 1074, 1178, 1397
BtsCI GGATG 1 cut(s) 519
BtsI GCAGTG 1 cut(s) 978
BtsIMutI CAGTG 4 cut(s) 679, 907, 978, 1254
Cac8I GCNNGC 2 cut(s) 39, 1201
CaiI CAGNNNCTG 2 cut(s) 989, 1088
CciI TCATGA 1 cut(s) 1129
Cfr10I RCCGGY 1 cut(s) 1153
Cfr13I GGNCC 5 cut(s) 131, 413, 865, 1274, 1367
CseI GACGC 2 cut(s) 209, 1030
Csp6I GTAC 5 cut(s) 325, 854, 891, 1241, 1348
CspAI ACCGGT 1 cut(s) 1153
CviQI GTAC 5 cut(s) 325, 854, 891, 1241, 1348
DdeI CTNAG 9 cut(s) 98, 110, 180, 628, 698, 733, 908, 1503, 1522
DpnI GATC 3 cut(s) 103, 170, 927
DpnII GATC 3 cut(s) 101, 168, 925
EaeI YGGCCR 3 cut(s) 424, 1072, 1395
Eam1104I CTCTTC 3 cut(s) 573, 711, 775
EarI CTCTTC 3 cut(s) 573, 711, 775
Ecl136II GAGCTC 2 cut(s) 704, 1408
Eco130I CCWWGG 3 cut(s) 304, 427, 1215
Eco147I AGGCCT 1 cut(s) 1178
Eco24I GRGCYC 2 cut(s) 706, 1410
Eco31I GGTCTC 1 cut(s) 968
Eco32I GATATC 1 cut(s) 598
Eco47I GGWCC 4 cut(s) 131, 865, 1274, 1367
Eco53kI GAGCTC 2 cut(s) 704, 1408
Eco57I CTGAAG 2 cut(s) 360, 1284
EcoICRI GAGCTC 2 cut(s) 704, 1408
EcoO109I RGGNCCY 3 cut(s) 413, 865, 1274
EcoRII CCWGG 2 cut(s) 75, 748
EcoRV GATATC 1 cut(s) 598
EcoT14I CCWWGG 3 cut(s) 304, 427, 1215
EcoT38I GRGCYC 2 cut(s) 706, 1410
ErhI CCWWGG 3 cut(s) 304, 427, 1215
FaqI GGGAC 3 cut(s) 172, 807, 1287
FauI CCCGC 1 cut(s) 1192
Fnu4HI GCNGC 1 cut(s) 240
FokI GGATG 1 cut(s) 526
FriOI GRGCYC 2 cut(s) 706, 1410
Fsp4HI GCNGC 1 cut(s) 240
FspBI CTAG 3 cut(s) 723, 797, 1418
GluI GCNGC 1 cut(s) 240
HaeIII GGCC 6 cut(s) 414, 426, 716, 1074, 1178, 1397
HapII CCGG 2 cut(s) 89, 1154
HgaI GACGC 2 cut(s) 209, 1030
HindIII AAGCTT 3 cut(s) 95, 622, 1334
HinfI GANTC 8 cut(s) 335, 533, 554, 745, 1078, 1126, 1133, 1143
HpaII CCGG 2 cut(s) 89, 1154
HphI GGTGA 3 cut(s) 91, 1135, 1504
Hpy166II GTNNAC 2 cut(s) 854, 1225
Hpy188I TCNGA 5 cut(s) 111, 155, 183, 340, 468
Hpy188III TCNNGA 8 cut(s) 172, 630, 645, 710, 884, 1025, 1082, 1130
Hpy8I GTNNAC 2 cut(s) 854, 1225
HpyAV CCTTC 5 cut(s) 154, 169, 842, 856, 1189
HpyCH4III ACNGT 2 cut(s) 284, 902
HpyCH4IV ACGT 2 cut(s) 327, 440
HpyCH4V TGCA 7 cut(s) 366, 550, 874, 948, 983, 1252, 1310
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 458, 989
HpyF3I CTNAG 9 cut(s) 98, 110, 180, 628, 698, 733, 908, 1503, 1522
HpySE526I ACGT 2 cut(s) 327, 440
Kzo9I GATC 3 cut(s) 101, 168, 925
LguI GCTCTTC 1 cut(s) 711
LmnI GCTCC 3 cut(s) 4, 487, 1101
Lsp1109I GCAGC 1 cut(s) 226
LweI GCATC 4 cut(s) 132, 769, 1075, 1270
MaeI CTAG 3 cut(s) 723, 797, 1418
MaeII ACGT 2 cut(s) 327, 440
MaeIII GTNAC 2 cut(s) 79, 902
MalI GATC 3 cut(s) 103, 170, 927
MboI GATC 3 cut(s) 101, 168, 925
MboII GAAGA 7 cut(s) 574, 590, 698, 755, 792, 1049, 1449
MhlI GDGCHC 3 cut(s) 463, 706, 1410
MlsI TGGCCA 3 cut(s) 426, 1074, 1397
MluCI AATT 7 cut(s) 105, 488, 684, 814, 1193, 1317, 1439
MluI ACGCGT 1 cut(s) 1039
MluNI TGGCCA 3 cut(s) 426, 1074, 1397
MlyI GAGTC 2 cut(s) 563, 1137
MmeI TCCRAC 2 cut(s) 109, 1345
Mox20I TGGCCA 3 cut(s) 426, 1074, 1397
MscI TGGCCA 3 cut(s) 426, 1074, 1397
MseI TTAA 2 cut(s) 507, 1515
MslI CAYNNNNRTG 1 cut(s) 1187
Msp20I TGGCCA 3 cut(s) 426, 1074, 1397
MspI CCGG 2 cut(s) 89, 1154
MspR9I CCNGG 2 cut(s) 77, 750
Mva1269I GAATGC 1 cut(s) 432
MvaI CCWGG 2 cut(s) 77, 750
MvnI CGCG 1 cut(s) 1041
MwoI GCNNNNNNNGC 3 cut(s) 94, 458, 989
NdeII GATC 3 cut(s) 101, 168, 925
NlaIV GGNNCC 1 cut(s) 1275
NmeAIII GCCGAG 1 cut(s) 1075
NmuCI GTSAC 2 cut(s) 79, 902
NspI RCATGY 4 cut(s) 366, 1096, 1211, 1354
PagI TCATGA 1 cut(s) 1129
PceI AGGCCT 1 cut(s) 1178
PciI ACATGT 1 cut(s) 1207
PciSI GCTCTTC 1 cut(s) 711
PctI GAATGC 1 cut(s) 432
PfeI GAWTC 6 cut(s) 335, 533, 745, 1078, 1126, 1133
PfoI TCCNGGA 1 cut(s) 748
PinAI ACCGGT 1 cut(s) 1153
PkrI GCNGC 1 cut(s) 241
PleI GAGTC 2 cut(s) 562, 1137
PpsI GAGTC 2 cut(s) 562, 1137
Ppu21I YACGTR 1 cut(s) 328
PpuMI RGGWCCY 2 cut(s) 865, 1274
PscI ACATGT 1 cut(s) 1207
Psp124BI GAGCTC 2 cut(s) 706, 1410
Psp5II RGGWCCY 2 cut(s) 865, 1274
Psp6I CCWGG 2 cut(s) 75, 748
PspGI CCWGG 2 cut(s) 75, 748
PspN4I GGNNCC 1 cut(s) 1275
PspPI GGNCC 5 cut(s) 131, 413, 865, 1274, 1367
PspPPI RGGWCCY 2 cut(s) 865, 1274
PstI CTGCAG 1 cut(s) 985
PstNI CAGNNNCTG 2 cut(s) 989, 1088
RsaI GTAC 5 cut(s) 326, 855, 892, 1242, 1349
RsaNI GTAC 5 cut(s) 325, 854, 891, 1241, 1348
RseI CAYNNNNRTG 1 cut(s) 1187
SacI GAGCTC 2 cut(s) 706, 1410
SapI GCTCTTC 1 cut(s) 711
SaqAI TTAA 2 cut(s) 507, 1515
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 3 cut(s) 101, 168, 925
Sau96I GGNCC 5 cut(s) 131, 413, 865, 1274, 1367
SchI GAGTC 2 cut(s) 563, 1137
ScrFI CCNGG 2 cut(s) 77, 750
SduI GDGCHC 3 cut(s) 463, 706, 1410
SfaNI GCATC 4 cut(s) 132, 769, 1075, 1270
SfcI CTRYAG 2 cut(s) 738, 981
SgrAI CRCCGGYG 1 cut(s) 1153
SinI GGWCC 4 cut(s) 131, 865, 1274, 1367
SmiMI CAYNNNNRTG 1 cut(s) 1187
SmlI CTYRAG 2 cut(s) 643, 884
SmoI CTYRAG 2 cut(s) 643, 884
SpeI ACTAGT 1 cut(s) 1417
Sse9I AATT 7 cut(s) 105, 488, 684, 814, 1193, 1317, 1439
SseBI AGGCCT 1 cut(s) 1178
SsiI CCGC 3 cut(s) 134, 917, 1199
SspI AATATT 2 cut(s) 321, 604
SspMI CTAG 3 cut(s) 723, 797, 1418
SstI GAGCTC 2 cut(s) 706, 1410
StuI AGGCCT 1 cut(s) 1178
StyD4I CCNGG 2 cut(s) 75, 748
StyI CCWWGG 3 cut(s) 304, 427, 1215
TaaI ACNGT 2 cut(s) 284, 902
TaiI ACGT 2 cut(s) 330, 443
TasI AATT 7 cut(s) 105, 488, 684, 814, 1193, 1317, 1439
TatI WGTACW 2 cut(s) 853, 1347
TfiI GAWTC 6 cut(s) 335, 533, 745, 1078, 1126, 1133
Tru1I TTAA 2 cut(s) 507, 1515
Tru9I TTAA 2 cut(s) 507, 1515
TscAI CASTG 4 cut(s) 679, 907, 985, 1261
TseFI GTSAC 2 cut(s) 79, 902
TseI GCWGC 1 cut(s) 239
Tsp45I GTSAC 2 cut(s) 79, 902
TspDTI ATGAA 9 cut(s) 10, 348, 591, 922, 1118, 1121, 1146, 1171, 1205
TspGWI ACGGA 2 cut(s) 1034, 1088
TspRI CASTG 4 cut(s) 679, 907, 985, 1261
VpaK11BI GGWCC 4 cut(s) 131, 865, 1274, 1367
XapI RAATTY 2 cut(s) 1193, 1439
XceI RCATGY 4 cut(s) 366, 1096, 1211, 1354
XspI CTAG 3 cut(s) 723, 797, 1418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.