Prupe.6G038200_v2.0.a1

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0001338
Physical Location & Seq
Forward (+)
2875617 .. 2878901
3285 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G038200.1

Sequence Viewer

Length: 1548 bp
ATGGAGCTTCTTCAAGTTGATGCGAAAATGTTGATGTCCCTTGTTCTGCTAGGGTTTATAGGATTGTTGATGCGCTTGTACAATGGGCTTGTGGCGAAGCCGAAGAAGCTGAGGTCCCTGCTAACCAAGCAAGGCATTAGCGGACCCCCGGCTACTCTTCTTCTGGGAAACATTATGGAGATAAAGAATTCTCGAGGCTCCGGCAATGTTTTCAGGGAGGGTGAAGCTCCCACCACTCATAATTGTGCTGCTCTGCTCTTTCCATTTTTTGAGAAGTGGAGGAAGCAATATGGTGAAGTGTTTATGTTCGCACTTGGCAATACACAGATATTATATGCGAACCAACCAGACACAGTGAGGGAGATTACAACATGCACGTCCTTGGACTTGGGAAAACCTACTTATCAATATAAAGAGCGCGGCCCCTTGCTTGGTCAAGGTATTTTGACCTCAAATGGAGCCTCATGGGCCCACCAGCGCAAAGTCATTGCTCCTGAATTATACATGGAGAAAGTTAAGGGAATGATCAACTTAATTACAGAGTCAACAACCACTCTGATAAATTCATGGAATAGTAGAATTGAGGCAGAGGGAGGAGTTGCCGACATAAAAATTGACAGCTACATAAGAAGTTTCTCTGGTGATGTAATCTCAAGAGCTTGTTTTGGAAGCAACTACTCCAAAGGGGAAGAGATATTTCAGAAACTAAGAAATCTCCAGGAGGCTATGTCCAAGAAAATCTTTTTGACTGGAGTTCCTGGAATGAGACACCTTCCCACGAAGAGCAACAGGGAAGCTTGGGCGTTAGAAAAGGAGGCTAGCACTTTGATCCTGCAAGTAGTCAAGGAAAGACAAGCAGCAGGATATGAGAAAGACCTCTTGCAAATGATTCTTGAGGGTGCTCGAAACACTGATCTCAGCCCAGAAGCAACAGACCGCTTCATTGTTGATAATTGCAAGAACATTTACTTGGCCGGCTATGAAACCACAGCGGTTTCAGCCACTTGGTGCCTCATGTTGTTGGCTTCAAATCAAAAATGGCAAGAACGTGTCAGGGCAGAGGTCCTTCAAATTTGCCAAGGCCAGATTCCTGATAACGAAATGGTTCGCAAGATGAAACAGCTAACAATGGTGATTCAAGAATCACTGCGGCTATATCCACCGGTTACTGTGGTGTCAAGGGAGGCTTTCAAGGACATGAAATTTGGGGACATAAATGTTCCGAAGGGTTTCAATGTTTGGACTACAGTAGTGACACTGCATACTGATCCAGAAATATGGGGCCCAGATGCCTACGAATTCAACCCAGATAGATTTGCAAACGGGATCACAGGTGCTTGCAAGCTTCCCCACTTGTACATGCCATTTGGGGTTGGGCCAAGAGTGTGTCTGGGGCAGAACTTGGCCATGGTTGAGCTAAAGGTTCTCCTAGCCCTCATAGTCTCCAACTTCTCCTTCTCACTTTCTCCCAAGTGCAAATATGGACCTGCTCTTAGATTGGTTGTGGAGCCAGAGCATGGAGTTGATCTCCTAGTGACGAAGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

516

Amino Acids

57.6

Weight (kDa)

8.85

Isoelectric Point (pI)

32.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1495
AccB1I GGYRCC 1 cut(s) 1008
AccB7I CCANNNNNTGG 1 cut(s) 1517
AccII CGCG 1 cut(s) 420
AciI CCGC 5 cut(s) 141, 420, 937, 992, 1150
AclWI GGATC 3 cut(s) 823, 1262, 1334
AcoI YGGCCR 2 cut(s) 972, 1404
AcsI RAATTY 5 cut(s) 187, 562, 1071, 1202, 1298
AdeI CACNNNGTG 1 cut(s) 1008
AfaI GTAC 2 cut(s) 80, 1358
AfiI CCNNNNNNNGG 2 cut(s) 431, 1517
AflIII ACRYGT 1 cut(s) 1048
AgeI ACCGGT 1 cut(s) 1162
AgsI TTSAA 7 cut(s) 14, 1029, 1070, 1139, 1192, 1234, 1303
AjiI CACGTC 1 cut(s) 378
AjnI CCWGG 2 cut(s) 717, 757
AjuI GAANNNNNNNTTGG 6 cut(s) 953, 985, 1071, 1103, 1439, 1471
Alw21I GWGCWC 1 cut(s) 904
Alw26I GTCTC 2 cut(s) 760, 1447
AlwI GGATC 3 cut(s) 823, 1262, 1334
Ama87I CYCGRG 1 cut(s) 192
AoxI GGCC 7 cut(s) 421, 468, 972, 1081, 1282, 1376, 1404
ApaI GGGCCC 2 cut(s) 472, 1286
ApeKI GCWGC 2 cut(s) 248, 857
ApoI RAATTY 5 cut(s) 187, 562, 1071, 1202, 1298
ArsI GACNNNNNNTTYG 2 cut(s) 1187, 1219
AsiGI ACCGGT 1 cut(s) 1162
Asp700I GAANNNNTTC 2 cut(s) 1104, 1229
AspLEI GCGC 3 cut(s) 75, 420, 480
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 4 cut(s) 233, 305, 653, 1144
AsuNHI GCTAGC 1 cut(s) 818
AvaI CYCGRG 1 cut(s) 192
AvaII GGWCC 4 cut(s) 114, 143, 1063, 1484
BaeGI GKGCMC 2 cut(s) 472, 1286
BalI TGGCCA 1 cut(s) 1406
BanI GGYRCC 1 cut(s) 1008
BanII GRGCYC 2 cut(s) 472, 1286
Bbv12I GWGCWC 1 cut(s) 904
BbvCI CCTCAGC 1 cut(s) 110
BbvI GCAGC 2 cut(s) 235, 869
BciT130I CCWGG 2 cut(s) 719, 759
BclI TGATCA 1 cut(s) 525
BcnI CCSGG 1 cut(s) 149
BcoDI GTCTC 2 cut(s) 760, 1447
BfaI CTAG 4 cut(s) 50, 819, 1430, 1532
BfmI CTRYAG 1 cut(s) 1245
BfuAI ACCTGC 1 cut(s) 1495
BglI GCCNNNNNGGC 1 cut(s) 467
BisI GCNGC 4 cut(s) 249, 421, 858, 1151
BlsI GCNGC 4 cut(s) 250, 422, 859, 1152
Bme1390I CCNGG 3 cut(s) 149, 719, 759
Bme18I GGWCC 4 cut(s) 114, 143, 1063, 1484
BmeT110I CYCGRG 1 cut(s) 192
BmgBI CACGTC 1 cut(s) 378
BmrFI CCNGG 3 cut(s) 149, 719, 759
BmsI GCATC 3 cut(s) 10, 60, 1279
BmtI GCTAGC 1 cut(s) 822
BplI GAGNNNNNCTC 2 cut(s) 1512, 1544
BpmI CTGGAG 2 cut(s) 701, 771
Bpu10I CCTNAGC 1 cut(s) 110
BpuEI CTTGAG 2 cut(s) 637, 914
BpuMI CCSGG 1 cut(s) 149
BsaJI CCNNGG 4 cut(s) 147, 381, 1078, 1407
BsaWI WCCGGW 1 cut(s) 1162
BsaXI ACNNNNNCTCC 2 cut(s) 713, 743
Bsc4I CCNNNNNNNGG 2 cut(s) 431, 1517
Bse118I RCCGGY 2 cut(s) 974, 1162
Bse1I ACTGG 1 cut(s) 754
Bse3DI GCAATG 2 cut(s) 211, 486
BseBI CCWGG 2 cut(s) 719, 759
BseDI CCNNGG 4 cut(s) 147, 381, 1078, 1407
BseLI CCNNNNNNNGG 2 cut(s) 431, 1517
BseMI GCAATG 2 cut(s) 211, 486
BseMII CTCAG 2 cut(s) 101, 931
BseNI ACTGG 1 cut(s) 754
BseRI GAGGAG 1 cut(s) 609
BseSI GKGCMC 2 cut(s) 472, 1286
BseXI GCAGC 2 cut(s) 235, 869
Bsh1236I CGCG 1 cut(s) 420
BshFI GGCC 7 cut(s) 423, 470, 974, 1083, 1284, 1378, 1406
BshNI GGYRCC 1 cut(s) 1008
BshTI ACCGGT 1 cut(s) 1162
BsiHKAI GWGCWC 1 cut(s) 904
BsiHKCI CYCGRG 1 cut(s) 192
BsiSI CCGG 4 cut(s) 149, 201, 975, 1163
BslFI GGGAC 3 cut(s) 22, 100, 1223
BslI CCNNNNNNNGG 2 cut(s) 431, 1517
BsmAI GTCTC 2 cut(s) 760, 1447
BsmFI GGGAC 3 cut(s) 22, 100, 1223
BsnI GGCC 7 cut(s) 423, 470, 974, 1083, 1284, 1378, 1406
BsoBI CYCGRG 1 cut(s) 192
Bsp120I GGGCCC 2 cut(s) 468, 1282
Bsp1286I GDGCHC 3 cut(s) 472, 904, 1286
Bsp1407I TGTACA 2 cut(s) 78, 1356
Bsp143I GATC 6 cut(s) 525, 828, 913, 1267, 1326, 1525
Bsp19I CCATGG 1 cut(s) 1407
BspACI CCGC 5 cut(s) 141, 420, 937, 992, 1150
BspANI GGCC 7 cut(s) 423, 470, 974, 1083, 1284, 1378, 1406
BspCNI CTCAG 2 cut(s) 102, 930
BspFNI CGCG 1 cut(s) 420
BspMI ACCTGC 1 cut(s) 1495
BspOI GCTAGC 1 cut(s) 822
BspPI GGATC 3 cut(s) 823, 1262, 1334
BspQI GCTCTTC 1 cut(s) 776
BspT107I GGYRCC 1 cut(s) 1008
BsrDI GCAATG 2 cut(s) 211, 486
BsrFI RCCGGY 2 cut(s) 974, 1162
BsrGI TGTACA 2 cut(s) 78, 1356
BsrI ACTGG 1 cut(s) 754
BssAI RCCGGY 2 cut(s) 974, 1162
BssECI CCNNGG 4 cut(s) 147, 381, 1078, 1407
BssMI GATC 6 cut(s) 525, 828, 913, 1267, 1326, 1525
BssT1I CCWWGG 3 cut(s) 381, 1078, 1407
Bst2UI CCWGG 2 cut(s) 719, 759
Bst4CI ACNGT 3 cut(s) 355, 1171, 1249
Bst6I CTCTTC 3 cut(s) 162, 684, 776
BstAUI TGTACA 2 cut(s) 78, 1356
BstC8I GCNNGC 4 cut(s) 820, 976, 1339, 1343
BstDEI CTNAG 4 cut(s) 110, 707, 917, 1493
BstDSI CCRYGG 1 cut(s) 1407
BstFNI CGCG 1 cut(s) 420
BstHHI GCGC 3 cut(s) 75, 420, 480
BstKTI GATC 6 cut(s) 528, 831, 916, 1270, 1329, 1528
BstMAI GTCTC 2 cut(s) 760, 1447
BstMBI GATC 6 cut(s) 525, 828, 913, 1267, 1326, 1525
BstMWI GCNNNNNNNGC 4 cut(s) 106, 127, 467, 998
BstNI CCWGG 2 cut(s) 719, 759
BstNSI RCATGY 2 cut(s) 375, 1363
BstSCI CCNGG 3 cut(s) 147, 717, 757
BstSFI CTRYAG 1 cut(s) 1245
BstSLI GKGCMC 2 cut(s) 472, 1286
BstUI CGCG 1 cut(s) 420
BstV1I GCAGC 2 cut(s) 235, 869
BstXI CCANNNNNNTGG 1 cut(s) 1278
BsuRI GGCC 7 cut(s) 423, 470, 974, 1083, 1284, 1378, 1406
BtgI CCRYGG 1 cut(s) 1407
BtrI CACGTC 1 cut(s) 378
BtsI GCAGTG 2 cut(s) 1145, 1256
BtsIMutI CAGTG 4 cut(s) 360, 909, 1145, 1256
BveI ACCTGC 1 cut(s) 1495
Cac8I GCNNGC 4 cut(s) 820, 976, 1339, 1343
CfoI GCGC 3 cut(s) 75, 420, 480
Cfr10I RCCGGY 2 cut(s) 974, 1162
Csp6I GTAC 2 cut(s) 79, 1357
CspAI ACCGGT 1 cut(s) 1162
CviAII CATG 9 cut(s) 372, 465, 505, 567, 1015, 1198, 1360, 1408, 1517
CviQI GTAC 2 cut(s) 79, 1357
DdeI CTNAG 4 cut(s) 110, 707, 917, 1493
DpnI GATC 6 cut(s) 527, 830, 915, 1269, 1328, 1527
DpnII GATC 6 cut(s) 525, 828, 913, 1267, 1326, 1525
DraIII CACNNNGTG 1 cut(s) 1008
EaeI YGGCCR 2 cut(s) 972, 1404
Eam1104I CTCTTC 3 cut(s) 162, 684, 776
EarI CTCTTC 3 cut(s) 162, 684, 776
Eco130I CCWWGG 3 cut(s) 381, 1078, 1407
Eco24I GRGCYC 2 cut(s) 472, 1286
Eco47I GGWCC 4 cut(s) 114, 143, 1063, 1484
Eco88I CYCGRG 1 cut(s) 192
EcoO109I RGGNCCY 3 cut(s) 114, 1063, 1282
EcoRI GAATTC 2 cut(s) 187, 1298
EcoRII CCWGG 2 cut(s) 717, 757
EcoT14I CCWWGG 3 cut(s) 381, 1078, 1407
EcoT38I GRGCYC 2 cut(s) 472, 1286
ErhI CCWWGG 3 cut(s) 381, 1078, 1407
FaeI CATG 9 cut(s) 375, 468, 508, 570, 1018, 1201, 1363, 1411, 1520
FalI AAGNNNNNCTT 4 cut(s) 725, 757, 1171, 1203
FaqI GGGAC 3 cut(s) 22, 100, 1223
FatI CATG 9 cut(s) 371, 464, 504, 566, 1014, 1197, 1359, 1407, 1516
FbaI TGATCA 1 cut(s) 525
Fnu4HI GCNGC 4 cut(s) 249, 421, 858, 1151
FriOI GRGCYC 2 cut(s) 472, 1286
Fsp4HI GCNGC 4 cut(s) 249, 421, 858, 1151
FspBI CTAG 4 cut(s) 50, 819, 1430, 1532
GlaI GCGC 3 cut(s) 74, 419, 479
GluI GCNGC 4 cut(s) 249, 421, 858, 1151
GsuI CTGGAG 2 cut(s) 701, 771
HaeIII GGCC 7 cut(s) 423, 470, 974, 1083, 1284, 1378, 1406
HapII CCGG 4 cut(s) 149, 201, 975, 1163
HhaI GCGC 3 cut(s) 75, 420, 480
Hin1II CATG 9 cut(s) 375, 468, 508, 570, 1018, 1201, 1363, 1411, 1520
Hin6I GCGC 3 cut(s) 73, 418, 478
HinP1I GCGC 3 cut(s) 73, 418, 478
HincII GTYRAC 1 cut(s) 546
HindII GTYRAC 1 cut(s) 546
HindIII AAGCTT 2 cut(s) 795, 1343
HinfI GANTC 5 cut(s) 542, 889, 1087, 1135, 1142
HpaII CCGG 4 cut(s) 149, 201, 975, 1163
HphI GGTGA 4 cut(s) 233, 305, 653, 1144
Hpy166II GTNNAC 1 cut(s) 546
Hpy188I TCNGA 3 cut(s) 558, 702, 1224
Hpy188III TCNNGA 7 cut(s) 192, 494, 654, 893, 1091, 1139, 1271
Hpy8I GTNNAC 1 cut(s) 546
HpyAV CCTTC 4 cut(s) 782, 1076, 1219, 1465
HpyCH4III ACNGT 3 cut(s) 355, 1171, 1249
HpyCH4IV ACGT 2 cut(s) 377, 1048
HpyCH4V TGCA 8 cut(s) 375, 835, 883, 957, 1261, 1319, 1341, 1476
HpyF10VI GCNNNNNNNGC 4 cut(s) 106, 127, 467, 998
HpyF3I CTNAG 4 cut(s) 110, 707, 917, 1493
HpySE526I ACGT 2 cut(s) 377, 1048
Hsp92II CATG 9 cut(s) 375, 468, 508, 570, 1018, 1201, 1363, 1411, 1520
HspAI GCGC 3 cut(s) 73, 418, 478
KroI GCCGGC 1 cut(s) 974
KroNI GCCGGC 1 cut(s) 976
Ksp22I TGATCA 1 cut(s) 525
Kzo9I GATC 6 cut(s) 525, 828, 913, 1267, 1326, 1525
LguI GCTCTTC 1 cut(s) 776
LmnI GCTCC 6 cut(s) 4, 203, 232, 458, 496, 1507
Lsp1109I GCAGC 2 cut(s) 235, 869
LweI GCATC 3 cut(s) 10, 60, 1279
MaeI CTAG 4 cut(s) 50, 819, 1430, 1532
MaeII ACGT 2 cut(s) 377, 1048
MaeIII GTNAC 3 cut(s) 1165, 1252, 1534
MalI GATC 6 cut(s) 527, 830, 915, 1269, 1328, 1527
MboI GATC 6 cut(s) 525, 828, 913, 1267, 1326, 1525
MboII GAAGA 5 cut(s) 115, 149, 152, 701, 793
MhlI GDGCHC 3 cut(s) 472, 904, 1286
MlsI TGGCCA 1 cut(s) 1406
MluNI TGGCCA 1 cut(s) 1406
MlyI GAGTC 1 cut(s) 551
MmeI TCCRAC 1 cut(s) 1470
Mox20I TGGCCA 1 cut(s) 1406
MroNI GCCGGC 1 cut(s) 974
MroXI GAANNNNTTC 2 cut(s) 1104, 1229
MscI TGGCCA 1 cut(s) 1406
MseI TTAA 2 cut(s) 516, 533
MslI CAYNNNNRTG 1 cut(s) 243
Msp20I TGGCCA 1 cut(s) 1406
MspA1I CMGCKG 1 cut(s) 992
MspI CCGG 4 cut(s) 149, 201, 975, 1163
MspR9I CCNGG 3 cut(s) 149, 719, 759
MvaI CCWGG 2 cut(s) 719, 759
MvnI CGCG 1 cut(s) 420
MwoI GCNNNNNNNGC 4 cut(s) 106, 127, 467, 998
NaeI GCCGGC 1 cut(s) 976
NciI CCSGG 1 cut(s) 149
NcoI CCATGG 1 cut(s) 1407
NdeII GATC 6 cut(s) 525, 828, 913, 1267, 1326, 1525
NgoMIV GCCGGC 1 cut(s) 974
NheI GCTAGC 1 cut(s) 818
NlaIII CATG 9 cut(s) 375, 468, 508, 570, 1018, 1201, 1363, 1411, 1520
NmuCI GTSAC 2 cut(s) 1252, 1534
NspI RCATGY 2 cut(s) 375, 1363
PaeR7I CTCGAG 1 cut(s) 192
PciSI GCTCTTC 1 cut(s) 776
PdiI GCCGGC 1 cut(s) 976
PdmI GAANNNNTTC 2 cut(s) 1104, 1229
PfeI GAWTC 4 cut(s) 889, 1087, 1135, 1142
PflMI CCANNNNNTGG 1 cut(s) 1517
PfoI TCCNGGA 2 cut(s) 717, 757
PinAI ACCGGT 1 cut(s) 1162
PkrI GCNGC 4 cut(s) 250, 422, 859, 1152
PleI GAGTC 1 cut(s) 550
PpsI GAGTC 1 cut(s) 550
PpuMI RGGWCCY 2 cut(s) 114, 1063
Psp5II RGGWCCY 2 cut(s) 114, 1063
Psp6I CCWGG 2 cut(s) 717, 757
PspGI CCWGG 2 cut(s) 717, 757
PspOMI GGGCCC 2 cut(s) 468, 1282
PspPPI RGGWCCY 2 cut(s) 114, 1063
RsaI GTAC 2 cut(s) 80, 1358
RsaNI GTAC 2 cut(s) 79, 1357
RseI CAYNNNNRTG 1 cut(s) 243
SapI GCTCTTC 1 cut(s) 776
SaqAI TTAA 2 cut(s) 516, 533
SatI GCNGC 4 cut(s) 249, 421, 858, 1151
Sau3AI GATC 6 cut(s) 525, 828, 913, 1267, 1326, 1525
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 3 cut(s) 149, 719, 759
SduI GDGCHC 3 cut(s) 472, 904, 1286
SfaNI GCATC 3 cut(s) 10, 60, 1279
SfcI CTRYAG 1 cut(s) 1245
Sfr274I CTCGAG 1 cut(s) 192
SinI GGWCC 4 cut(s) 114, 143, 1063, 1484
SlaI CTCGAG 1 cut(s) 192
SmiMI CAYNNNNRTG 1 cut(s) 243
SmlI CTYRAG 3 cut(s) 192, 652, 893
SmoI CTYRAG 3 cut(s) 192, 652, 893
SsiI CCGC 5 cut(s) 141, 420, 937, 992, 1150
SspMI CTAG 4 cut(s) 50, 819, 1430, 1532
StyD4I CCNGG 3 cut(s) 147, 717, 757
StyI CCWWGG 3 cut(s) 381, 1078, 1407
TaaI ACNGT 3 cut(s) 355, 1171, 1249
TaiI ACGT 2 cut(s) 380, 1051
TaqI TCGA 2 cut(s) 193, 904
TatI WGTACW 2 cut(s) 78, 1356
TauI GCSGC 2 cut(s) 423, 1153
TfiI GAWTC 4 cut(s) 889, 1087, 1135, 1142
Tru1I TTAA 2 cut(s) 516, 533
Tru9I TTAA 2 cut(s) 516, 533
TscAI CASTG 4 cut(s) 360, 916, 1152, 1263
TseFI GTSAC 2 cut(s) 1252, 1534
TseI GCWGC 2 cut(s) 248, 857
Tsp45I GTSAC 2 cut(s) 1252, 1534
TspDTI ATGAA 5 cut(s) 555, 931, 996, 1130, 1214
TspRI CASTG 4 cut(s) 360, 916, 1152, 1263
Van91I CCANNNNNTGG 1 cut(s) 1517
VpaK11BI GGWCC 4 cut(s) 114, 143, 1063, 1484
XapI RAATTY 5 cut(s) 187, 562, 1071, 1202, 1298
XceI RCATGY 2 cut(s) 375, 1363
XhoI CTCGAG 1 cut(s) 192
XmnI GAANNNNTTC 2 cut(s) 1104, 1229
XspI CTAG 4 cut(s) 50, 819, 1430, 1532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.