Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8502647.1

Orthogroup ID

OG0001338

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2029

Gene Structure 2029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8502647.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

atggagctcctccacgggttcgatgtgaaaatgttggtgtcgacggtggcgctgatcgggttcgtggggttgctggtgcggttgtataaggggctagtggcggagccgaagaggctgagatccctactggccaagcaaggcatcaccggacctccacaagctttgcttctcgggaatatctcggagataaagagggctcatggccgcggtggcaatgctaaggctccgagcagcgaaccacccacctcacacaacctggctgctactatcttccccttctttgataagtggaggaagcaatttggtgacgtgtttgtgtttggtcttggcaccacgcaaatcctatatgtgatcaaacgagaagcagtgagggagatcacaacctgcacatccttggacttggggaaacccacataccaattcaaacagcgtggtcctttacttggtaaaggtattttgacctccaatggagcctcgtgggctcatcagcgcaaggtcatggctcctgaactttacatggagaaggtcaagggaatgatcaacttaattaccgaatcctcgaatactctggtgaacttgtggaacggtaaaattgatgctggcaaaggagttgcagacataaaaattgacaacgatttgagaagcttctctggtgatgttatctcgagggcatgttttgggagcagttataccaaaggggtacagatttttgataaactaaggcaactccaggaggccatgggcaggaaagtctttgggggtgcagttcctggaatgagacaccttcctacaaagagcaatagggaagaatgggcattagaaaaggaggttgcgaggttgatactgcaattagtgaaggagagacaggcagctgggcacgaaaaagacttgttgcaaatgattcttgagggtgcaagagccagtgatctcagtcaagatgcagcagacagcttcattgttgataattgcaagaacatatacttagctggatatgaaaccacagctacttctgccacatggtgcctcatgctgttggcttcgaatcaagaatggcgagaacgcattagagcagaggtccttcaagtttgccaaggccgcgtcccagatgctgatatgcttcgcaagatgaaacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

378

Amino Acids

41.91

Weight (kDa)

9.54

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001338)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41150 FvH4_3g41150 FvH4_3g41220 FvH4_6g00880
malus_domestica	MD03G1046700.v1.1 MD03G1046800.v1.1 MD03G1046900.v1.1 MD11G1049600.v1.1 MD14G1091100.v1.1
prunus_persica	Prupe.6G038100_v2.0.a1 Prupe.6G038200_v2.0.a1
pyrus_communis	pycom03g03670 pycom03g03680 pycom03g03690 pycom03g03700 pycom11g03990
rosa_chinensis	RchiOBHm_Chr3g0448361 RchiOBHm_Chr5g0073931 RchiOBHm_Chr5g0073981
rosa_laevigata	RLG00000025921 RLG00000036409 RLG00000036426 RLG00000036428 RLG00000036435 RLG00000036436
rosa_multiflora	Rmu_co8324669.1_g000001 Rmu_co8391719.1_g000001 Rmu_co8502647.1_g000001 Rmu_sc0000470.1_g000021 Rmu_sc0012303.1_g000003 Rmu_sc0015167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00007390 Rroxscaffold_1G00007440 Rroxscaffold_6G00426550
rosa_rugosa	Rorug02G0611700 Rorug05G0427600 Rorug05G0427700 Rorug05G0427800 Rorug05G0428200
rosa_samantha	Rh3AG010900 Rh3BG010700 Rh3CG010400 Rh3DG011100 Rh5AG484500 Rh5AG485200 Rh5BG505200 Rh5BG505600 Rh5CG529000 Rh5CG529300 Rh5DG517600 Rh5DG517900
rosa_wichuraiana	Rw3G000850 Rw5G045040 Rw5G045050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	392
AccB1I	GGYRCC	2 cut(s)	329, 1020
AccI	GTMKAC	1 cut(s)	41
AccII	CGCG	2 cut(s)	207, 1098
AciI	CCGC	5 cut(s)	79, 101, 205, 207, 1096
AclWI	GGATC	1 cut(s)	114
AcoI	YGGCCR	2 cut(s)	129, 202
AdeI	CACNNNGTG	1 cut(s)	1020
AfaI	GTAC	1 cut(s)	702
AfiI	CCNNNNNNNGG	2 cut(s)	443, 744
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	2 cut(s)	424, 1082
AjiI	CACGTC	1 cut(s)	310
AjnI	CCWGG	3 cut(s)	255, 729, 769
AluBI	AGCT	7 cut(s)	7, 161, 645, 872, 951, 986, 1004
AluI	AGCT	7 cut(s)	7, 161, 645, 872, 951, 986, 1004
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	2 cut(s)	772, 856
AlwI	GGATC	1 cut(s)	114
AlwNI	CAGNNNCTG	2 cut(s)	770, 1109
Ama87I	CYCGRG	2 cut(s)	170, 664
AoxI	GGCC	4 cut(s)	129, 202, 735, 1093
ApeKI	GCWGC	4 cut(s)	231, 260, 869, 941
AspLEI	GCGC	2 cut(s)	52, 492
AspS9I	GGNCC	3 cut(s)	149, 434, 1075
AsuHPI	GGTGA	4 cut(s)	136, 317, 583, 665
AsuII	TTCGAA	1 cut(s)	1040
AvaI	CYCGRG	2 cut(s)	170, 664
AvaII	GGWCC	3 cut(s)	149, 434, 1075
BaeGI	GKGCMC	1 cut(s)	879
BalI	TGGCCA	1 cut(s)	131
BanI	GGYRCC	2 cut(s)	329, 1020
BanII	GRGCYC	3 cut(s)	9, 199, 484
BauI	CACGAG	1 cut(s)	475
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	4 cut(s)	243, 247, 881, 953
BciT130I	CCWGG	3 cut(s)	257, 731, 771
BclI	TGATCA	2 cut(s)	351, 537
BcoDI	GTCTC	2 cut(s)	772, 856
BfaI	CTAG	1 cut(s)	95
BfoI	RGCGCY	1 cut(s)	53
BfuAI	ACCTGC	1 cut(s)	392
BglI	GCCNNNNNGGC	3 cut(s)	112, 210, 479
BisI	GCNGC	6 cut(s)	205, 232, 261, 870, 942, 1096
BlsI	GCNGC	6 cut(s)	206, 233, 262, 871, 943, 1097
Bme1390I	CCNGG	3 cut(s)	257, 731, 771
Bme18I	GGWCC	3 cut(s)	149, 434, 1075
BmeT110I	CYCGRG	2 cut(s)	170, 664
BmgBI	CACGTC	1 cut(s)	310
BmgT120I	GGNCC	3 cut(s)	149, 434, 1075
BmiI	GGNNCC	6 cut(s)	105, 225, 331, 472, 504, 1022
BmrFI	CCNGG	3 cut(s)	257, 731, 771
BmsI	GCATC	4 cut(s)	150, 586, 928, 1096
BpmI	CTGGAG	1 cut(s)	713
Bpu10I	CCTNAGC	1 cut(s)	219
Bpu14I	TTCGAA	1 cut(s)	1040
BpuEI	CTTGAG	1 cut(s)	926
BsaJI	CCNNGG	5 cut(s)	13, 205, 393, 738, 1090
BsaWI	WCCGGW	1 cut(s)	146
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	2 cut(s)	443, 744
Bse1I	ACTGG	2 cut(s)	132, 921
Bse3DI	GCAATG	1 cut(s)	220
BseBI	CCWGG	3 cut(s)	257, 731, 771
BseDI	CCNNGG	5 cut(s)	13, 205, 393, 738, 1090
BseGI	GGATG	1 cut(s)	389
BseLI	CCNNNNNNNGG	2 cut(s)	443, 744
BseMI	GCAATG	1 cut(s)	220
BseMII	CTCAG	2 cut(s)	107, 943
BseNI	ACTGG	2 cut(s)	132, 921
BseSI	GKGCMC	1 cut(s)	879
BseXI	GCAGC	4 cut(s)	243, 247, 881, 953
BseYI	CCCAGC	1 cut(s)	872
BsgI	GTGCAG	2 cut(s)	370, 783
Bsh1236I	CGCG	2 cut(s)	207, 1098
BshFI	GGCC	4 cut(s)	131, 204, 737, 1095
BshNI	GGYRCC	2 cut(s)	329, 1020
BsiHKAI	GWGCWC	1 cut(s)	9
BsiHKCI	CYCGRG	2 cut(s)	170, 664
BsiSI	CCGG	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	1085
BslI	CCNNNNNNNGG	2 cut(s)	443, 744
BsmAI	GTCTC	2 cut(s)	772, 856
BsmFI	GGGAC	1 cut(s)	1085
BsnI	GGCC	4 cut(s)	131, 204, 737, 1095
BsoBI	CYCGRG	2 cut(s)	170, 664
Bsp119I	TTCGAA	1 cut(s)	1040
Bsp1286I	GDGCHC	4 cut(s)	9, 199, 484, 879
Bsp143I	GATC	6 cut(s)	54, 119, 351, 375, 537, 925
Bsp19I	CCATGG	1 cut(s)	738
BspACI	CCGC	5 cut(s)	79, 101, 205, 207, 1096
BspANI	GGCC	4 cut(s)	131, 204, 737, 1095
BspCNI	CTCAG	2 cut(s)	108, 942
BspFNI	CGCG	2 cut(s)	207, 1098
BspLI	GGNNCC	6 cut(s)	105, 225, 331, 472, 504, 1022
BspMI	ACCTGC	1 cut(s)	392
BspPI	GGATC	1 cut(s)	114
BspT104I	TTCGAA	1 cut(s)	1040
BspT107I	GGYRCC	2 cut(s)	329, 1020
BsrDI	GCAATG	1 cut(s)	220
BsrI	ACTGG	2 cut(s)	132, 921
BssECI	CCNNGG	5 cut(s)	13, 205, 393, 738, 1090
BssMI	GATC	6 cut(s)	54, 119, 351, 375, 537, 925
BssSI	CACGAG	1 cut(s)	475
BssT1I	CCWWGG	3 cut(s)	393, 738, 1090
Bst2BI	CACGAG	1 cut(s)	475
Bst2UI	CCWGG	3 cut(s)	257, 731, 771
Bst4CI	ACNGT	2 cut(s)	46, 587
Bst6I	CTCTTC	1 cut(s)	104
BstBI	TTCGAA	1 cut(s)	1040
BstC8I	GCNNGC	1 cut(s)	601
BstDEI	CTNAG	5 cut(s)	116, 219, 719, 929, 982
BstDSI	CCRYGG	3 cut(s)	13, 205, 738
BstF5I	GGATG	1 cut(s)	389
BstFNI	CGCG	2 cut(s)	207, 1098
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	2 cut(s)	52, 492
BstKTI	GATC	6 cut(s)	57, 122, 354, 378, 540, 928
BstMAI	GTCTC	2 cut(s)	772, 856
BstMBI	GATC	6 cut(s)	54, 119, 351, 375, 537, 925
BstMWI	GCNNNNNNNGC	5 cut(s)	112, 210, 479, 1010, 1095
BstNI	CCWGG	3 cut(s)	257, 731, 771
BstNSI	RCATGY	1 cut(s)	675
BstSCI	CCNGG	3 cut(s)	255, 729, 769
BstSLI	GKGCMC	1 cut(s)	879
BstUI	CGCG	2 cut(s)	207, 1098
BstV1I	GCAGC	4 cut(s)	243, 247, 881, 953
BstX2I	RGATCY	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	119
BsuRI	GGCC	4 cut(s)	131, 204, 737, 1095
BtgI	CCRYGG	3 cut(s)	13, 205, 738
BtrI	CACGTC	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	389
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	2 cut(s)	372, 928
BveI	ACCTGC	1 cut(s)	392
Cac8I	GCNNGC	1 cut(s)	601
CaiI	CAGNNNCTG	2 cut(s)	770, 1109
CfoI	GCGC	2 cut(s)	52, 492
Cfr13I	GGNCC	3 cut(s)	149, 434, 1075
Cfr42I	CCGCGG	1 cut(s)	208
CseI	GACGC	1 cut(s)	1087
Csp6I	GTAC	1 cut(s)	701
CspCI	CAANNNNNGTGG	4 cut(s)	144, 179, 412, 447
CviAII	CATG	7 cut(s)	200, 499, 517, 672, 739, 1017, 1027
CviQI	GTAC	1 cut(s)	701
DdeI	CTNAG	5 cut(s)	116, 219, 719, 929, 982
DpnI	GATC	6 cut(s)	56, 121, 353, 377, 539, 927
DpnII	GATC	6 cut(s)	54, 119, 351, 375, 537, 925
DraIII	CACNNNGTG	1 cut(s)	1020
EaeI	YGGCCR	2 cut(s)	129, 202
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
EciI	GGCGGA	1 cut(s)	116
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	3 cut(s)	393, 738, 1090
Eco24I	GRGCYC	3 cut(s)	9, 199, 484
Eco47I	GGWCC	3 cut(s)	149, 434, 1075
Eco53kI	GAGCTC	1 cut(s)	7
Eco88I	CYCGRG	2 cut(s)	170, 664
EcoICRI	GAGCTC	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	1075
EcoRII	CCWGG	3 cut(s)	255, 729, 769
EcoT14I	CCWWGG	3 cut(s)	393, 738, 1090
EcoT38I	GRGCYC	3 cut(s)	9, 199, 484
ErhI	CCWWGG	3 cut(s)	393, 738, 1090
FaeI	CATG	7 cut(s)	203, 502, 520, 675, 742, 1020, 1030
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FaqI	GGGAC	1 cut(s)	1085
FatI	CATG	7 cut(s)	199, 498, 516, 671, 738, 1016, 1026
FbaI	TGATCA	2 cut(s)	351, 537
FblI	GTMKAC	1 cut(s)	41
Fnu4HI	GCNGC	6 cut(s)	205, 232, 261, 870, 942, 1096
FokI	GGATG	1 cut(s)	376
FriOI	GRGCYC	3 cut(s)	9, 199, 484
Fsp4HI	GCNGC	6 cut(s)	205, 232, 261, 870, 942, 1096
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	2 cut(s)	51, 491
GluI	GCNGC	6 cut(s)	205, 232, 261, 870, 942, 1096
GsaI	CCCAGC	1 cut(s)	876
GsuI	CTGGAG	1 cut(s)	713
HaeII	RGCGCY	1 cut(s)	53
HaeIII	GGCC	4 cut(s)	131, 204, 737, 1095
HapII	CCGG	1 cut(s)	147
HgaI	GACGC	1 cut(s)	1087
HhaI	GCGC	2 cut(s)	52, 492
Hin1II	CATG	7 cut(s)	203, 502, 520, 675, 742, 1020, 1030
Hin6I	GCGC	2 cut(s)	50, 490
HinP1I	GCGC	2 cut(s)	50, 490
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HindIII	AAGCTT	2 cut(s)	159, 643
HinfI	GANTC	3 cut(s)	554, 901, 1042
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	4 cut(s)	136, 317, 583, 665
Hpy166II	GTNNAC	2 cut(s)	42, 574
Hpy188I	TCNGA	2 cut(s)	184, 228
Hpy188III	TCNNGA	6 cut(s)	172, 506, 664, 905, 935, 1046
Hpy8I	GTNNAC	2 cut(s)	42, 574
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	5 cut(s)	286, 517, 794, 850, 1088
HpyCH4III	ACNGT	2 cut(s)	46, 587
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	8 cut(s)	387, 614, 764, 847, 895, 914, 941, 969
HpyF10VI	GCNNNNNNNGC	5 cut(s)	112, 210, 479, 1010, 1095
HpyF3I	CTNAG	5 cut(s)	116, 219, 719, 929, 982
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	7 cut(s)	203, 502, 520, 675, 742, 1020, 1030
HspAI	GCGC	2 cut(s)	50, 490
Ksp22I	TGATCA	2 cut(s)	351, 537
KspI	CCGCGG	1 cut(s)	208
Kzo9I	GATC	6 cut(s)	54, 119, 351, 375, 537, 925
LmnI	GCTCC	7 cut(s)	4, 12, 103, 229, 470, 508, 681
Lsp1109I	GCAGC	4 cut(s)	243, 247, 881, 953
LweI	GCATC	4 cut(s)	150, 586, 928, 1096
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	6 cut(s)	56, 121, 353, 377, 539, 927
MboI	GATC	6 cut(s)	54, 119, 351, 375, 537, 925
MboII	GAAGA	3 cut(s)	121, 262, 818
MflI	RGATCY	1 cut(s)	119
MhlI	GDGCHC	4 cut(s)	9, 199, 484, 879
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	7 cut(s)	299, 419, 546, 591, 624, 848, 964
MluNI	TGGCCA	1 cut(s)	131
Mox20I	TGGCCA	1 cut(s)	131
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	1 cut(s)	545
Msp20I	TGGCCA	1 cut(s)	131
MspA1I	CMGCKG	2 cut(s)	207, 872
MspI	CCGG	1 cut(s)	147
MspR9I	CCNGG	3 cut(s)	257, 731, 771
MvaI	CCWGG	3 cut(s)	257, 731, 771
MvnI	CGCG	2 cut(s)	207, 1098
MwoI	GCNNNNNNNGC	5 cut(s)	112, 210, 479, 1010, 1095
NcoI	CCATGG	1 cut(s)	738
NdeII	GATC	6 cut(s)	54, 119, 351, 375, 537, 925
NlaIII	CATG	7 cut(s)	203, 502, 520, 675, 742, 1020, 1030
NlaIV	GGNNCC	6 cut(s)	105, 225, 331, 472, 504, 1022
NmuCI	GTSAC	1 cut(s)	305
NspI	RCATGY	1 cut(s)	675
NspV	TTCGAA	1 cut(s)	1040
PaeR7I	CTCGAG	1 cut(s)	664
PfeI	GAWTC	3 cut(s)	554, 901, 1042
PfoI	TCCNGGA	2 cut(s)	729, 769
PkrI	GCNGC	6 cut(s)	206, 233, 262, 871, 943, 1097
PpuMI	RGGWCCY	1 cut(s)	1075
Psp124BI	GAGCTC	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	1075
Psp6I	CCWGG	3 cut(s)	255, 729, 769
PspFI	CCCAGC	1 cut(s)	872
PspGI	CCWGG	3 cut(s)	255, 729, 769
PspN4I	GGNNCC	6 cut(s)	105, 225, 331, 472, 504, 1022
PspPI	GGNCC	3 cut(s)	149, 434, 1075
PspPPI	RGGWCCY	1 cut(s)	1075
PstNI	CAGNNNCTG	2 cut(s)	770, 1109
PsuI	RGATCY	1 cut(s)	119
PvuII	CAGCTG	1 cut(s)	872
RsaI	GTAC	1 cut(s)	702
RsaNI	GTAC	1 cut(s)	701
SacI	GAGCTC	1 cut(s)	9
SacII	CCGCGG	1 cut(s)	208
SalI	GTCGAC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	545
SatI	GCNGC	6 cut(s)	205, 232, 261, 870, 942, 1096
Sau3AI	GATC	6 cut(s)	54, 119, 351, 375, 537, 925
Sau96I	GGNCC	3 cut(s)	149, 434, 1075
ScrFI	CCNGG	3 cut(s)	257, 731, 771
SduI	GDGCHC	4 cut(s)	9, 199, 484, 879
SfaNI	GCATC	4 cut(s)	150, 586, 928, 1096
Sfr274I	CTCGAG	1 cut(s)	664
Sfr303I	CCGCGG	1 cut(s)	208
SfuI	TTCGAA	1 cut(s)	1040
SgrBI	CCGCGG	1 cut(s)	208
SinI	GGWCC	3 cut(s)	149, 434, 1075
SlaI	CTCGAG	1 cut(s)	664
SmlI	CTYRAG	2 cut(s)	664, 905
SmoI	CTYRAG	2 cut(s)	664, 905
Sse9I	AATT	7 cut(s)	299, 419, 546, 591, 624, 848, 964
SsiI	CCGC	5 cut(s)	79, 101, 205, 207, 1096
SspMI	CTAG	1 cut(s)	95
SstI	GAGCTC	1 cut(s)	9
StyD4I	CCNGG	3 cut(s)	255, 729, 769
StyI	CCWWGG	3 cut(s)	393, 738, 1090
TaaI	ACNGT	2 cut(s)	46, 587
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	5 cut(s)	21, 41, 560, 665, 1040
TasI	AATT	7 cut(s)	299, 419, 546, 591, 624, 848, 964
TauI	GCSGC	2 cut(s)	207, 1098
TfiI	GAWTC	3 cut(s)	554, 901, 1042
Tru1I	TTAA	1 cut(s)	545
Tru9I	TTAA	1 cut(s)	545
TscAI	CASTG	2 cut(s)	372, 928
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	4 cut(s)	231, 260, 869, 941
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	2 cut(s)	943, 1008
TspRI	CASTG	2 cut(s)	372, 928
VpaK11BI	GGWCC	3 cut(s)	149, 434, 1075
XceI	RCATGY	1 cut(s)	675
XhoI	CTCGAG	1 cut(s)	664
XmiI	GTMKAC	1 cut(s)	41
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.