Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8391719.1

Orthogroup ID

OG0001338

Physical Location & Seq

Genomic Coordinates Forward (+)

167 .. 1176

Gene Structure 1010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8391719.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atggagcctgaaaagatgttcatgtcctttgcgttgcttgctttcctgggtttgtttgctcgtctatacaatgccttggtgatgaagccggagaagctaagatcaatcctgaggaagcaaggcattgttggaccgcctcctaccttcttgctcggaaatatcaaggagatcaagaaggctcaaaagtccccaacccaagacgctaccataactcaactcctagcctcccacaaccttgctgctactctctttcccttctttgaagaatggagaaacaaatatggtcaagtgttcaacttctcccttggcaacacacaaatattgtatgtgaatgaatctgaagctgtgagagaaataaccacatgcacatctttggacttggggaagcctacctatcagttcaaagagcgtggccctttgcttggccaaggcattctaacttcaaatggtgctgtttgggcacatcagagaaaagtccttgctccacaattatacatggacaaggttaaggggatgataaatcttatcacagaatctgcgattacattgcaagagtcatggaaaagtaggattgatgaagagggtggggtggcagatatcaatattgatgaggacatgagaagcttctcgggagatgttatctcaagagcttgttttggaagcaactttgccagtgggcaagtgatctttcacaaactaagagatctccaagaagccatgtctaggaaatgcttggccacagggattcctggaatgaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0010268 GO:0010817 GO:0016128 GO:0016131 GO:0016491 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

253

Amino Acids

28.31

Weight (kDa)

9.08

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001338)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41150 FvH4_3g41150 FvH4_3g41220 FvH4_6g00880
malus_domestica	MD03G1046700.v1.1 MD03G1046800.v1.1 MD03G1046900.v1.1 MD11G1049600.v1.1 MD14G1091100.v1.1
prunus_persica	Prupe.6G038100_v2.0.a1 Prupe.6G038200_v2.0.a1
pyrus_communis	pycom03g03670 pycom03g03680 pycom03g03690 pycom03g03700 pycom11g03990
rosa_chinensis	RchiOBHm_Chr3g0448361 RchiOBHm_Chr5g0073931 RchiOBHm_Chr5g0073981
rosa_laevigata	RLG00000025921 RLG00000036409 RLG00000036426 RLG00000036428 RLG00000036435 RLG00000036436
rosa_multiflora	Rmu_co8324669.1_g000001 Rmu_co8391719.1_g000001 Rmu_co8502647.1_g000001 Rmu_sc0000470.1_g000021 Rmu_sc0012303.1_g000003 Rmu_sc0015167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00007390 Rroxscaffold_1G00007440 Rroxscaffold_6G00426550
rosa_rugosa	Rorug02G0611700 Rorug05G0427600 Rorug05G0427700 Rorug05G0427800 Rorug05G0428200
rosa_samantha	Rh3AG010900 Rh3BG010700 Rh3CG010400 Rh3DG011100 Rh5AG484500 Rh5AG485200 Rh5BG505200 Rh5BG505600 Rh5CG529000 Rh5CG529300 Rh5DG517600 Rh5DG517900
rosa_wichuraiana	Rw3G000850 Rw5G045040 Rw5G045050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	134
AcoI	YGGCCR	2 cut(s)	424, 735
AcuI	CTGAAG	1 cut(s)	360
AfiI	CCNNNNNNNGG	2 cut(s)	422, 723
AgsI	TTSAA	4 cut(s)	263, 295, 403, 444
AjnI	CCWGG	2 cut(s)	45, 748
AluBI	AGCT	4 cut(s)	97, 344, 624, 650
AluI	AGCT	4 cut(s)	97, 344, 624, 650
AlwNI	CAGNNNCTG	1 cut(s)	536
Ama87I	CYCGRG	1 cut(s)	628
AoxI	GGCC	3 cut(s)	412, 424, 735
ApeKI	GCWGC	1 cut(s)	239
AspS9I	GGNCC	2 cut(s)	131, 413
AsuHPI	GGTGA	1 cut(s)	91
AvaI	CYCGRG	1 cut(s)	628
AvaII	GGWCC	1 cut(s)	131
AxyI	CCTNAGG	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	463
BalI	TGGCCA	2 cut(s)	426, 737
BbvI	GCAGC	1 cut(s)	226
BcgI	CGANNNNNNTGC	2 cut(s)	529, 563
BciT130I	CCWGG	2 cut(s)	47, 750
BfaI	CTAG	2 cut(s)	221, 723
BglII	AGATCT	1 cut(s)	703
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	2 cut(s)	47, 750
Bme18I	GGWCC	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	628
BmgT120I	GGNCC	2 cut(s)	131, 413
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	47, 750
BpuEI	CTTGAG	1 cut(s)	628
BsaJI	CCNNGG	4 cut(s)	46, 75, 304, 427
Bsc4I	CCNNNNNNNGG	2 cut(s)	422, 723
Bse1I	ACTGG	1 cut(s)	672
Bse21I	CCTNAGG	1 cut(s)	110
Bse3DI	GCAATG	1 cut(s)	545
BseBI	CCWGG	2 cut(s)	47, 750
BseDI	CCNNGG	4 cut(s)	46, 75, 304, 427
BseGI	GGATG	1 cut(s)	519
BseLI	CCNNNNNNNGG	2 cut(s)	422, 723
BseMI	GCAATG	1 cut(s)	545
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	1 cut(s)	672
BseSI	GKGCMC	1 cut(s)	463
BseXI	GCAGC	1 cut(s)	226
BshFI	GGCC	3 cut(s)	414, 426, 737
BsiHKCI	CYCGRG	1 cut(s)	628
BsiSI	CCGG	1 cut(s)	89
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	2 cut(s)	422, 723
BsmFI	GGGAC	1 cut(s)	172
BsmI	GAATGC	1 cut(s)	432
BsnI	GGCC	3 cut(s)	414, 426, 737
BsoBI	CYCGRG	1 cut(s)	628
Bsp1286I	GDGCHC	1 cut(s)	463
Bsp143I	GATC	4 cut(s)	101, 168, 684, 703
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	3 cut(s)	414, 426, 737
BspCNI	CTCAG	1 cut(s)	102
BspLI	GGNNCC	1 cut(s)	6
BsrDI	GCAATG	1 cut(s)	545
BsrI	ACTGG	1 cut(s)	672
BssECI	CCNNGG	4 cut(s)	46, 75, 304, 427
BssMI	GATC	4 cut(s)	101, 168, 684, 703
BssT1I	CCWWGG	3 cut(s)	75, 304, 427
Bst2UI	CCWGG	2 cut(s)	47, 750
Bst6I	CTCTTC	1 cut(s)	573
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	3 cut(s)	98, 110, 698
BstF5I	GGATG	1 cut(s)	519
BstKTI	GATC	4 cut(s)	104, 171, 687, 706
BstMBI	GATC	4 cut(s)	101, 168, 684, 703
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 94, 458
BstNI	CCWGG	2 cut(s)	47, 750
BstNSI	RCATGY	1 cut(s)	366
BstSCI	CCNGG	2 cut(s)	45, 748
BstSLI	GKGCMC	1 cut(s)	463
BstV1I	GCAGC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	703
BstYI	RGATCY	1 cut(s)	703
Bsu36I	CCTNAGG	1 cut(s)	110
BsuRI	GGCC	3 cut(s)	414, 426, 737
BtsCI	GGATG	1 cut(s)	519
BtsIMutI	CAGTG	1 cut(s)	679
Cac8I	GCNNGC	1 cut(s)	39
CaiI	CAGNNNCTG	1 cut(s)	536
Cfr13I	GGNCC	2 cut(s)	131, 413
CseI	GACGC	1 cut(s)	209
CspCI	CAANNNNNGTGG	2 cut(s)	391, 426
CviAII	CATG	6 cut(s)	22, 363, 496, 558, 616, 718
DdeI	CTNAG	3 cut(s)	98, 110, 698
DpnI	GATC	4 cut(s)	103, 170, 686, 705
DpnII	GATC	4 cut(s)	101, 168, 684, 703
EaeI	YGGCCR	2 cut(s)	424, 735
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
Eco130I	CCWWGG	3 cut(s)	75, 304, 427
Eco32I	GATATC	1 cut(s)	598
Eco47I	GGWCC	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	360
Eco81I	CCTNAGG	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	628
EcoRII	CCWGG	2 cut(s)	45, 748
EcoRV	GATATC	1 cut(s)	598
EcoT14I	CCWWGG	3 cut(s)	75, 304, 427
ErhI	CCWWGG	3 cut(s)	75, 304, 427
FaeI	CATG	6 cut(s)	25, 366, 499, 561, 619, 721
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	6 cut(s)	21, 362, 495, 557, 615, 717
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	1 cut(s)	526
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	2 cut(s)	221, 723
GluI	GCNGC	1 cut(s)	240
HaeIII	GGCC	3 cut(s)	414, 426, 737
HapII	CCGG	1 cut(s)	89
HgaI	GACGC	1 cut(s)	209
Hin1II	CATG	6 cut(s)	25, 366, 499, 561, 619, 721
HindIII	AAGCTT	1 cut(s)	622
HinfI	GANTC	4 cut(s)	335, 533, 554, 745
HpaII	CCGG	1 cut(s)	89
HphI	GGTGA	1 cut(s)	91
Hpy188I	TCNGA	3 cut(s)	155, 340, 468
Hpy188III	TCNNGA	4 cut(s)	109, 172, 630, 645
HpyAV	CCTTC	3 cut(s)	154, 169, 265
HpyCH4V	TGCA	2 cut(s)	366, 550
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 94, 458
HpyF3I	CTNAG	3 cut(s)	98, 110, 698
Hsp92II	CATG	6 cut(s)	25, 366, 499, 561, 619, 721
Kzo9I	GATC	4 cut(s)	101, 168, 684, 703
LmnI	GCTCC	2 cut(s)	4, 487
LpnPI	CCDG	8 cut(s)	21, 32, 59, 102, 122, 685, 726, 735
Lsp1109I	GCAGC	1 cut(s)	226
MaeI	CTAG	2 cut(s)	221, 723
MalI	GATC	4 cut(s)	103, 170, 686, 705
MboI	GATC	4 cut(s)	101, 168, 684, 703
MboII	GAAGA	2 cut(s)	275, 590
MflI	RGATCY	1 cut(s)	703
MhlI	GDGCHC	1 cut(s)	463
MlsI	TGGCCA	2 cut(s)	426, 737
MluCI	AATT	1 cut(s)	488
MluNI	TGGCCA	2 cut(s)	426, 737
MlyI	GAGTC	1 cut(s)	563
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	6 cut(s)	105, 147, 235, 574, 604, 750
Mox20I	TGGCCA	2 cut(s)	426, 737
MscI	TGGCCA	2 cut(s)	426, 737
MseI	TTAA	1 cut(s)	507
Msp20I	TGGCCA	2 cut(s)	426, 737
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	2 cut(s)	47, 750
Mva1269I	GAATGC	1 cut(s)	432
MvaI	CCWGG	2 cut(s)	47, 750
MwoI	GCNNNNNNNGC	3 cut(s)	38, 94, 458
NdeII	GATC	4 cut(s)	101, 168, 684, 703
NlaIII	CATG	6 cut(s)	25, 366, 499, 561, 619, 721
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	366
PctI	GAATGC	1 cut(s)	432
PfeI	GAWTC	3 cut(s)	335, 533, 745
PfoI	TCCNGGA	1 cut(s)	748
PkrI	GCNGC	1 cut(s)	241
PleI	GAGTC	1 cut(s)	562
PpsI	GAGTC	1 cut(s)	562
Psp6I	CCWGG	2 cut(s)	45, 748
PspGI	CCWGG	2 cut(s)	45, 748
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	131, 413
PstNI	CAGNNNCTG	1 cut(s)	536
PsuI	RGATCY	1 cut(s)	703
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	4 cut(s)	101, 168, 684, 703
Sau96I	GGNCC	2 cut(s)	131, 413
SchI	GAGTC	1 cut(s)	563
ScrFI	CCNGG	2 cut(s)	47, 750
SduI	GDGCHC	1 cut(s)	463
SetI	ASST	9 cut(s)	99, 146, 237, 346, 395, 507, 626, 652, 761
SinI	GGWCC	1 cut(s)	131
SmlI	CTYRAG	1 cut(s)	643
SmoI	CTYRAG	1 cut(s)	643
Sse9I	AATT	1 cut(s)	488
SsiI	CCGC	1 cut(s)	134
SspI	AATATT	2 cut(s)	321, 604
SspMI	CTAG	2 cut(s)	221, 723
StyD4I	CCNGG	2 cut(s)	45, 748
StyI	CCWWGG	3 cut(s)	75, 304, 427
TasI	AATT	1 cut(s)	488
TfiI	GAWTC	3 cut(s)	335, 533, 745
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	1 cut(s)	679
TseI	GCWGC	1 cut(s)	239
TspDTI	ATGAA	4 cut(s)	10, 98, 348, 591
TspRI	CASTG	1 cut(s)	679
VpaK11BI	GGWCC	1 cut(s)	131
XceI	RCATGY	1 cut(s)	366
XspI	CTAG	2 cut(s)	221, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.