Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001338

Physical Location & Seq

Genomic Coordinates Reverse (-)

59460981 .. 59472341

Gene Structure 11361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0427600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGAGCCCTTTATAAGAACCTTGAACAATTTAGCAAGTAATCCTAAATCTCAGATCGGTATTCTATCTTCACCTCGAGGTTTTAAGGTATCTAATCTTGTCTTTGCTAACGATTGTTTGATCTTTGCAAAAGCTAATCACTCAGCAGCCAAAAATATTCTTAATACGCTTCACACCATCTCAGAAGCTACAGGCCAACAGGGGAATTATCACAAATCCACTCTTTTCTTTTTTTCTAATGTTTCTTCATCAATCAAAAGAGACATTTCAAATTGCATTGGTGTACAACATAAATTGTCTATTGGTAAGTATCTTGGTCTTCATAATATTATTTGTTGGAAAGATCCTATTAATCGAAATGAACTTATGCTTCGAATGCAGAAAAAATTTTCAGGATGGAAAGCAAATACCCTTTCACGTGCAGAGGTAAATCAAGGTTTAATTATGAGTAGAGGTGGAGCTAAGCTACTTGCAGGGACAGCATCGAAGACAAATGATCCACAAACTCTTAGAATGGTTGCTGGAGCACTTGCTAATTTATGTGGAAATGAAAGATTACACATGATGCTGAAAGAAGATGGAGGCATTAAGGCGCTCTTGGAAATGGCAAGGTCTGGGAGTAGTGACGTTATAGCGCAAGTTGCTAGAGGAATGGCTAATTTTGCTAAGTGTGAATCTCGCGGAACTATTCAAGGACATAGAAAAGGTCACTCCCTTTTGATCGAAGATGGTGCCCTTACTTGGTTGATTGGAAACTCCAATACTACCTCGTCTTCAACAAAACGCCATATTGAGCTTGCTCTCTGCCATTTAGCACAAAATGAGGACAATGCAAACGATTTCATATTCAGTGGAGGACTGAAAGAGCTTATGCAAATATCGAATGAATCCAGTAGGGAAGATATCCGAAATTTAGCAAAGAAGACGTTGAGATTGAGTACAAAATTTCAGACTGAGATCCTTGCAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

323

Amino Acids

35.44

Weight (kDa)

9.67

Isoelectric Point (pI)

39.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001338)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41150 FvH4_3g41150 FvH4_3g41220 FvH4_6g00880
malus_domestica	MD03G1046700.v1.1 MD03G1046800.v1.1 MD03G1046900.v1.1 MD11G1049600.v1.1 MD14G1091100.v1.1
prunus_persica	Prupe.6G038100_v2.0.a1 Prupe.6G038200_v2.0.a1
pyrus_communis	pycom03g03670 pycom03g03680 pycom03g03690 pycom03g03700 pycom11g03990
rosa_chinensis	RchiOBHm_Chr3g0448361 RchiOBHm_Chr5g0073931 RchiOBHm_Chr5g0073981
rosa_laevigata	RLG00000025921 RLG00000036409 RLG00000036426 RLG00000036428 RLG00000036435 RLG00000036436
rosa_multiflora	Rmu_co8324669.1_g000001 Rmu_co8391719.1_g000001 Rmu_co8502647.1_g000001 Rmu_sc0000470.1_g000021 Rmu_sc0012303.1_g000003 Rmu_sc0015167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00007390 Rroxscaffold_1G00007440 Rroxscaffold_6G00426550
rosa_rugosa	Rorug02G0611700 Rorug05G0427600 Rorug05G0427700 Rorug05G0427800 Rorug05G0428200
rosa_samantha	Rh3AG010900 Rh3BG010700 Rh3CG010400 Rh3DG011100 Rh5AG484500 Rh5AG485200 Rh5BG505200 Rh5BG505600 Rh5CG529000 Rh5CG529300 Rh5DG517600 Rh5DG517900
rosa_wichuraiana	Rw3G000850 Rw5G045040 Rw5G045050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	14
AbsI	CCTCGAGG	1 cut(s)	75
AccB1I	GGYRCC	1 cut(s)	731
AccII	CGCG	1 cut(s)	681
AciI	CCGC	1 cut(s)	681
AclWI	GGATC	3 cut(s)	338, 491, 952
AcsI	RAATTY	3 cut(s)	386, 910, 944
AcvI	CACGTG	1 cut(s)	419
AfaI	GTAC	2 cut(s)	285, 940
AfiI	CCNNNNNNNGG	1 cut(s)	741
AgsI	TTSAA	4 cut(s)	25, 270, 692, 777
AluBI	AGCT	6 cut(s)	134, 188, 461, 466, 796, 868
AluI	AGCT	6 cut(s)	134, 188, 461, 466, 796, 868
Alw21I	GWGCWC	1 cut(s)	529
Alw26I	GTCTC	1 cut(s)	255
AlwI	GGATC	3 cut(s)	338, 491, 952
Ama87I	CYCGRG	1 cut(s)	75
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	3 cut(s)	386, 910, 944
AseI	ATTAAT	1 cut(s)	351
AspLEI	GCGC	2 cut(s)	595, 637
AsuHPI	GGTGA	1 cut(s)	63
AsuII	TTCGAA	1 cut(s)	373
AvaI	CYCGRG	1 cut(s)	75
BaeGI	GKGCMC	1 cut(s)	736
BanI	GGYRCC	1 cut(s)	731
BanII	GRGCYC	1 cut(s)	9
BarI	GAAGNNNNNNTAC	2 cut(s)	52, 84
BbrPI	CACGTG	1 cut(s)	419
BbsI	GAAGAC	4 cut(s)	311, 494, 765, 929
Bbv12I	GWGCWC	1 cut(s)	529
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	4 cut(s)	185, 390, 572, 722
BcgI	CGANNNNNNTGC	2 cut(s)	713, 747
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	1 cut(s)	645
BfmI	CTRYAG	1 cut(s)	189
BfoI	RGCGCY	1 cut(s)	596
BisI	GCNGC	1 cut(s)	147
BlpI	GCTNAGC	1 cut(s)	462
BlsI	GCNGC	1 cut(s)	148
BmeT110I	CYCGRG	1 cut(s)	75
BmiI	GGNNCC	2 cut(s)	6, 733
BmsI	GCATC	2 cut(s)	491, 555
BpiI	GAAGAC	4 cut(s)	311, 494, 765, 929
BpmI	CTGGAG	1 cut(s)	543
Bpu1102I	GCTNAGC	1 cut(s)	462
Bpu14I	TTCGAA	1 cut(s)	373
BsaAI	YACGTR	1 cut(s)	419
Bsc4I	CCNNNNNNNGG	1 cut(s)	741
Bse1I	ACTGG	1 cut(s)	891
BseGI	GGATG	1 cut(s)	401
BseLI	CCNNNNNNNGG	1 cut(s)	741
BseMII	CTCAG	4 cut(s)	65, 156, 195, 945
BseNI	ACTGG	1 cut(s)	891
BseSI	GKGCMC	1 cut(s)	736
BseXI	GCAGC	1 cut(s)	158
BsgI	GTGCAG	1 cut(s)	441
Bsh1236I	CGCG	1 cut(s)	681
BshFI	GGCC	1 cut(s)	195
BshNI	GGYRCC	1 cut(s)	731
BsiHKAI	GWGCWC	1 cut(s)	529
BsiHKCI	CYCGRG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	490
BslI	CCNNNNNNNGG	1 cut(s)	741
BsmAI	GTCTC	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	490
BsmI	GAATGC	1 cut(s)	381
BsnI	GGCC	1 cut(s)	195
BsoBI	CYCGRG	1 cut(s)	75
Bsp119I	TTCGAA	1 cut(s)	373
Bsp1286I	GDGCHC	3 cut(s)	9, 529, 736
Bsp1407I	TGTACA	1 cut(s)	283
Bsp143I	GATC	6 cut(s)	54, 120, 343, 496, 720, 957
Bsp1720I	GCTNAGC	1 cut(s)	462
BspACI	CCGC	1 cut(s)	681
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	4 cut(s)	64, 155, 194, 946
BspFNI	CGCG	1 cut(s)	681
BspLI	GGNNCC	2 cut(s)	6, 733
BspPI	GGATC	3 cut(s)	338, 491, 952
BspT104I	TTCGAA	1 cut(s)	373
BspT107I	GGYRCC	1 cut(s)	731
BsrGI	TGTACA	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	891
BssMI	GATC	6 cut(s)	54, 120, 343, 496, 720, 957
BstAUI	TGTACA	1 cut(s)	283
BstBAI	YACGTR	1 cut(s)	419
BstBI	TTCGAA	1 cut(s)	373
BstC8I	GCNNGC	1 cut(s)	798
BstDEI	CTNAG	7 cut(s)	51, 142, 181, 462, 509, 666, 954
BstF5I	GGATG	1 cut(s)	401
BstFNI	CGCG	1 cut(s)	681
BstH2I	RGCGCY	1 cut(s)	596
BstHHI	GCGC	2 cut(s)	595, 637
BstKTI	GATC	6 cut(s)	57, 123, 346, 499, 723, 960
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	6 cut(s)	54, 120, 343, 496, 720, 957
BstMWI	GCNNNNNNNGC	4 cut(s)	376, 479, 641, 662
BstSFI	CTRYAG	1 cut(s)	189
BstSLI	GKGCMC	1 cut(s)	736
BstUI	CGCG	1 cut(s)	681
BstV1I	GCAGC	1 cut(s)	158
BstV2I	GAAGAC	4 cut(s)	311, 494, 765, 929
BstX2I	RGATCY	2 cut(s)	343, 957
BstYI	RGATCY	2 cut(s)	343, 957
BsuRI	GGCC	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	401
BtsIMutI	CAGTG	1 cut(s)	856
Cac8I	GCNNGC	1 cut(s)	798
CfoI	GCGC	2 cut(s)	595, 637
Csp6I	GTAC	2 cut(s)	284, 939
CviAII	CATG	1 cut(s)	562
CviQI	GTAC	2 cut(s)	284, 939
DdeI	CTNAG	7 cut(s)	51, 142, 181, 462, 509, 666, 954
DpnI	GATC	6 cut(s)	56, 122, 345, 498, 722, 959
DpnII	GATC	6 cut(s)	54, 120, 343, 496, 720, 957
Eco24I	GRGCYC	1 cut(s)	9
Eco32I	GATATC	1 cut(s)	904
Eco72I	CACGTG	1 cut(s)	419
Eco88I	CYCGRG	1 cut(s)	75
EcoRV	GATATC	1 cut(s)	904
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	1 cut(s)	565
FalI	AAGNNNNNCTT	2 cut(s)	581, 613
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	1 cut(s)	561
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	1 cut(s)	408
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	1 cut(s)	645
GlaI	GCGC	2 cut(s)	594, 636
GluI	GCNGC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	543
HaeII	RGCGCY	1 cut(s)	596
HaeIII	GGCC	1 cut(s)	195
HhaI	GCGC	2 cut(s)	595, 637
Hin1II	CATG	1 cut(s)	565
Hin6I	GCGC	2 cut(s)	593, 635
HinP1I	GCGC	2 cut(s)	593, 635
HinfI	GANTC	2 cut(s)	674, 887
HphI	GGTGA	1 cut(s)	63
Hpy166II	GTNNAC	1 cut(s)	284
Hpy188I	TCNGA	4 cut(s)	54, 184, 908, 951
Hpy188III	TCNNGA	1 cut(s)	393
Hpy8I	GTNNAC	1 cut(s)	284
HpyCH4IV	ACGT	3 cut(s)	418, 627, 926
HpyCH4V	TGCA	8 cut(s)	128, 276, 379, 422, 473, 833, 874, 965
HpyF10VI	GCNNNNNNNGC	4 cut(s)	376, 479, 641, 662
HpyF3I	CTNAG	7 cut(s)	51, 142, 181, 462, 509, 666, 954
HpySE526I	ACGT	3 cut(s)	418, 627, 926
Hsp92II	CATG	1 cut(s)	565
HspAI	GCGC	2 cut(s)	593, 635
Kzo9I	GATC	6 cut(s)	54, 120, 343, 496, 720, 957
LmnI	GCTCC	3 cut(s)	4, 458, 524
LpnPI	CCDG	7 cut(s)	177, 185, 378, 459, 507, 600, 904
Lsp1109I	GCAGC	1 cut(s)	158
LweI	GCATC	2 cut(s)	491, 555
MaeI	CTAG	1 cut(s)	645
MaeII	ACGT	3 cut(s)	418, 627, 926
MaeIII	GTNAC	2 cut(s)	623, 707
MalI	GATC	6 cut(s)	56, 122, 345, 498, 722, 959
MboI	GATC	6 cut(s)	54, 120, 343, 496, 720, 957
MboII	GAAGA	9 cut(s)	60, 237, 311, 499, 587, 737, 765, 911, 934
MflI	RGATCY	2 cut(s)	343, 957
MhlI	GDGCHC	3 cut(s)	9, 529, 736
MmeI	TCCRAC	1 cut(s)	317
MnlI	CCTC	9 cut(s)	71, 84, 418, 446, 575, 641, 778, 817, 848
MseI	TTAA	5 cut(s)	84, 162, 351, 440, 588
Mva1269I	GAATGC	1 cut(s)	381
MvnI	CGCG	1 cut(s)	681
MwoI	GCNNNNNNNGC	4 cut(s)	376, 479, 641, 662
NdeII	GATC	6 cut(s)	54, 120, 343, 496, 720, 957
NlaIII	CATG	1 cut(s)	565
NlaIV	GGNNCC	2 cut(s)	6, 733
NmuCI	GTSAC	2 cut(s)	623, 707
NspV	TTCGAA	1 cut(s)	373
PaeR7I	CTCGAG	1 cut(s)	75
PctI	GAATGC	1 cut(s)	381
PfeI	GAWTC	2 cut(s)	674, 887
PkrI	GCNGC	1 cut(s)	148
PmaCI	CACGTG	1 cut(s)	419
PmlI	CACGTG	1 cut(s)	419
Ppu21I	YACGTR	1 cut(s)	419
PshBI	ATTAAT	1 cut(s)	351
PsiI	TTATAA	1 cut(s)	14
PspCI	CACGTG	1 cut(s)	419
PspN4I	GGNNCC	2 cut(s)	6, 733
PspXI	VCTCGAGB	1 cut(s)	75
PsuI	RGATCY	2 cut(s)	343, 957
RsaI	GTAC	2 cut(s)	285, 940
RsaNI	GTAC	2 cut(s)	284, 939
SaqAI	TTAA	5 cut(s)	84, 162, 351, 440, 588
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	6 cut(s)	54, 120, 343, 496, 720, 957
SduI	GDGCHC	3 cut(s)	9, 529, 736
SfaNI	GCATC	2 cut(s)	491, 555
SfcI	CTRYAG	1 cut(s)	189
Sfr274I	CTCGAG	1 cut(s)	75
SfuI	TTCGAA	1 cut(s)	373
SlaI	CTCGAG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
SsiI	CCGC	1 cut(s)	681
SspI	AATATT	2 cut(s)	157, 328
SspMI	CTAG	1 cut(s)	645
TaiI	ACGT	3 cut(s)	421, 630, 929
TaqI	TCGA	6 cut(s)	76, 355, 373, 485, 723, 881
TatI	WGTACW	2 cut(s)	283, 938
TfiI	GAWTC	2 cut(s)	674, 887
Tru1I	TTAA	5 cut(s)	84, 162, 351, 440, 588
Tru9I	TTAA	5 cut(s)	84, 162, 351, 440, 588
TscAI	CASTG	1 cut(s)	856
TseFI	GTSAC	2 cut(s)	623, 707
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	2 cut(s)	623, 707
TspDTI	ATGAA	6 cut(s)	237, 311, 375, 564, 832, 900
TspRI	CASTG	1 cut(s)	856
VspI	ATTAAT	1 cut(s)	351
XapI	RAATTY	3 cut(s)	386, 910, 944
XhoI	CTCGAG	1 cut(s)	75
XspI	CTAG	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.