Rorug05G0427700

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
59508642 .. 59511621
2980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0427700.1

Sequence Viewer

Length: 306 bp
ATGCGCATTTACAACCAGTCCAAAAAGTCTGAGATCAAAACCAGAGAAGAGGGGCTGGACAGAGGTCAACTAACAGGGTTGGTCACTTGGATATCGTTGATTGCTTTCTTCATTCCCGTGATGTTTACCCACTCTCCATTCAACTCTAGGTACCTACAATTGAATTCTGTTAAGTTTTTGCTTCTTGTTTCTTTTTTCCTTTGGAGTTTTGAGGTAATGAAAGTTAGCATCTTTGGATCAAATCACAGATTTACCATTTTCTCTCTACTCCACATTTGTGATCAAGGCCCATCATGGTTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

101

Amino Acids

11.9

Weight (kDa)

9.65

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
Acc65I GGTACC 1 cut(s) 150
AccB1I GGYRCC 1 cut(s) 150
AclWI GGATC 1 cut(s) 244
AcsI RAATTY 1 cut(s) 163
AfaI GTAC 1 cut(s) 152
AgsI TTSAA 3 cut(s) 142, 163, 302
AleI CACNNNNGTG 1 cut(s) 276
AlwI GGATC 1 cut(s) 244
AoxI GGCC 1 cut(s) 286
ApoI RAATTY 1 cut(s) 163
Asp718I GGTACC 1 cut(s) 150
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 287
BanI GGYRCC 1 cut(s) 150
BccI CCATC 1 cut(s) 298
BclI TGATCA 1 cut(s) 280
BfaI CTAG 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 1 cut(s) 152
BmsI GCATC 1 cut(s) 237
BoxI GACNNNNGTC 1 cut(s) 63
BsaXI ACNNNNNCTCC 2 cut(s) 118, 148
Bse1I ACTGG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 21
BseNI ACTGG 1 cut(s) 16
BshFI GGCC 1 cut(s) 288
BshNI GGYRCC 1 cut(s) 150
BsnI GGCC 1 cut(s) 288
Bsp143I GATC 3 cut(s) 33, 236, 280
BspANI GGCC 1 cut(s) 288
BspCNI CTCAG 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 152
BspPI GGATC 1 cut(s) 244
BspT107I GGYRCC 1 cut(s) 150
BsrI ACTGG 1 cut(s) 16
BssMI GATC 3 cut(s) 33, 236, 280
Bst6I CTCTTC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 30
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 3 cut(s) 36, 239, 283
BstMBI GATC 3 cut(s) 33, 236, 280
BstPAI GACNNNNGTC 1 cut(s) 63
BsuRI GGCC 1 cut(s) 288
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 287
Csp6I GTAC 1 cut(s) 151
CviAII CATG 1 cut(s) 294
CviJI RGCY 2 cut(s) 55, 288
CviKI_1 RGCY 2 cut(s) 55, 288
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 1 cut(s) 30
DpnI GATC 3 cut(s) 35, 238, 282
DpnII GATC 3 cut(s) 33, 236, 280
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco32I GATATC 1 cut(s) 93
EcoRI GAATTC 1 cut(s) 163
EcoRV GATATC 1 cut(s) 93
FaeI CATG 1 cut(s) 297
FaiI YATR 1 cut(s) 295
FatI CATG 1 cut(s) 293
FbaI TGATCA 1 cut(s) 280
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 1 cut(s) 147
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
HaeIII GGCC 1 cut(s) 288
HhaI GCGC 1 cut(s) 6
Hin1II CATG 1 cut(s) 297
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HincII GTYRAC 1 cut(s) 68
HindII GTYRAC 1 cut(s) 68
Hpy166II GTNNAC 2 cut(s) 68, 126
Hpy188I TCNGA 1 cut(s) 31
Hpy8I GTNNAC 2 cut(s) 68, 126
HpyF3I CTNAG 1 cut(s) 30
Hsp92II CATG 1 cut(s) 297
HspAI GCGC 1 cut(s) 4
KpnI GGTACC 1 cut(s) 154
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 3 cut(s) 33, 236, 280
LpnPI CCDG 4 cut(s) 29, 41, 55, 60
LweI GCATC 1 cut(s) 237
MaeI CTAG 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 82
MalI GATC 3 cut(s) 35, 238, 282
MboI GATC 3 cut(s) 33, 236, 280
MboII GAAGA 2 cut(s) 59, 100
MfeI CAATTG 1 cut(s) 158
MluCI AATT 2 cut(s) 158, 163
MnlI CCTC 3 cut(s) 43, 56, 205
MseI TTAA 1 cut(s) 171
MslI CAYNNNNRTG 2 cut(s) 116, 276
MunI CAATTG 1 cut(s) 158
NdeII GATC 3 cut(s) 33, 236, 280
NlaIII CATG 1 cut(s) 297
NlaIV GGNNCC 1 cut(s) 152
NmuCI GTSAC 1 cut(s) 82
NsbI TGCGCA 1 cut(s) 5
OliI CACNNNNGTG 1 cut(s) 276
PshAI GACNNNNGTC 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 152
PspPI GGNCC 1 cut(s) 287
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
RseI CAYNNNNRTG 2 cut(s) 116, 276
SaqAI TTAA 1 cut(s) 171
Sau3AI GATC 3 cut(s) 33, 236, 280
Sau96I GGNCC 1 cut(s) 287
SetI ASST 4 cut(s) 67, 152, 156, 216
SfaNI GCATC 1 cut(s) 237
SmiMI CAYNNNNRTG 2 cut(s) 116, 276
Sse9I AATT 2 cut(s) 158, 163
SspMI CTAG 1 cut(s) 147
TasI AATT 2 cut(s) 158, 163
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TseFI GTSAC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 2 cut(s) 100, 233
XapI RAATTY 1 cut(s) 163
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.