Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001338

Physical Location & Seq

Genomic Coordinates Forward (+)

9530289 .. 9533287

Gene Structure 2999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00007440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGAGCTCCTCCACGGGTTCGATGTGAAAATGTTGGTGTCGACGGTGGCGCTGATTGGGTTCGTGGGGTTGCTGGTGCGGTTGTATAAGGGGCTAGTGGCGAAGCCGAAGAGGCTGAGATCCCTACTGGCCAAGCAAGGCATCACCGGACCTCCACAGGCTTTGCTTCTCGGGAATATCTCGGAGATAAAGAAGGCTCACGGCCGCAGTGGCAATGCTAAGGCTCCGAGCAGCGAACCACCCACCTCACACAACCTGGCTGCTACTATCTTCCCCTTCTTTGATAAGTGGAGGAAGCAATTTGGTGATGTGTTTGTGTTTGGTCTTGGCACCACGCAAATACTATATGTGATCAAACCAGAAGCAGTGAGGGAGATCACAACCTGCACATCCTTGGACTTGGGGAAACCCACATATCAATTCAAACAGCGTGGTCCTTTACTTGGTAAAGGTATTTTGACCTCCAATGGAGCCTCGTGGGCTCATCAGCGCAAGGTCATGGCTCCTGAACTTTACATGGAGAAGGTCAAGGGAATGATCAACTTAATTACCGAATCCTCGAATACTCTGGTGAACTTGTGGAACAGTAAAATTGATGCTGGCAAAGGAGTTGCAGACATAAAAATCGACAACCATTTGAGAAGCTTCTCTGGTGATGTTATCTCGAGGGCATGTTTTGGGAGCAGTTATACCAAAGGGGTACAGATTTTTGATAAACTAAGGCAACTCCAGGAGGCCATGGGCAGGAAAGTCTTTGGGGGTGCAGTTCCTGGAATGAGTCACCTTCCTACAAAGAGCAATAGGGAAGAATGGGCATTAGAAAAGGAGGTTGCGAGGTTGATACTGCAATTAGTGAAGGAGAGACAGGCAGCTGGGCACGAAAAGACTTGTTGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

299

Amino Acids

32.9

Weight (kDa)

9.89

Isoelectric Point (pI)

39.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	90 - 290	4.7e-18	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001338)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41150 FvH4_3g41150 FvH4_3g41220 FvH4_6g00880
malus_domestica	MD03G1046700.v1.1 MD03G1046800.v1.1 MD03G1046900.v1.1 MD11G1049600.v1.1 MD14G1091100.v1.1
prunus_persica	Prupe.6G038100_v2.0.a1 Prupe.6G038200_v2.0.a1
pyrus_communis	pycom03g03670 pycom03g03680 pycom03g03690 pycom03g03700 pycom11g03990
rosa_chinensis	RchiOBHm_Chr3g0448361 RchiOBHm_Chr5g0073931 RchiOBHm_Chr5g0073981
rosa_laevigata	RLG00000025921 RLG00000036409 RLG00000036426 RLG00000036428 RLG00000036435 RLG00000036436
rosa_multiflora	Rmu_co8324669.1_g000001 Rmu_co8391719.1_g000001 Rmu_co8502647.1_g000001 Rmu_sc0000470.1_g000021 Rmu_sc0012303.1_g000003 Rmu_sc0015167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00007390 Rroxscaffold_1G00007440 Rroxscaffold_6G00426550
rosa_rugosa	Rorug02G0611700 Rorug05G0427600 Rorug05G0427700 Rorug05G0427800 Rorug05G0428200
rosa_samantha	Rh3AG010900 Rh3BG010700 Rh3CG010400 Rh3DG011100 Rh5AG484500 Rh5AG485200 Rh5BG505200 Rh5BG505600 Rh5CG529000 Rh5CG529300 Rh5DG517600 Rh5DG517900
rosa_wichuraiana	Rw3G000850 Rw5G045040 Rw5G045050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	392
AccB1I	GGYRCC	1 cut(s)	329
AccI	GTMKAC	1 cut(s)	41
AciI	CCGC	2 cut(s)	79, 205
AclWI	GGATC	1 cut(s)	114
AcoI	YGGCCR	2 cut(s)	129, 202
AfaI	GTAC	1 cut(s)	702
AfiI	CCNNNNNNNGG	2 cut(s)	443, 744
AgsI	TTSAA	1 cut(s)	424
AjnI	CCWGG	3 cut(s)	255, 729, 769
AluBI	AGCT	3 cut(s)	7, 645, 872
AluI	AGCT	3 cut(s)	7, 645, 872
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	856
AlwI	GGATC	1 cut(s)	114
AlwNI	CAGNNNCTG	1 cut(s)	770
Ama87I	CYCGRG	2 cut(s)	170, 664
AoxI	GGCC	3 cut(s)	129, 202, 735
ApeKI	GCWGC	3 cut(s)	231, 260, 869
AspLEI	GCGC	2 cut(s)	52, 492
AspS9I	GGNCC	2 cut(s)	149, 434
AsuHPI	GGTGA	5 cut(s)	136, 317, 583, 665, 773
AvaI	CYCGRG	2 cut(s)	170, 664
AvaII	GGWCC	2 cut(s)	149, 434
BaeGI	GKGCMC	1 cut(s)	879
BalI	TGGCCA	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	329
BanII	GRGCYC	2 cut(s)	9, 484
BauI	CACGAG	1 cut(s)	475
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	3 cut(s)	243, 247, 881
BceAI	ACGGC	1 cut(s)	217
BciT130I	CCWGG	3 cut(s)	257, 731, 771
BclI	TGATCA	2 cut(s)	351, 537
BcoDI	GTCTC	1 cut(s)	856
BfaI	CTAG	1 cut(s)	95
BfoI	RGCGCY	1 cut(s)	53
BfuAI	ACCTGC	1 cut(s)	392
BglI	GCCNNNNNGGC	3 cut(s)	112, 210, 479
BisI	GCNGC	4 cut(s)	205, 232, 261, 870
BlsI	GCNGC	4 cut(s)	206, 233, 262, 871
Bme1390I	CCNGG	3 cut(s)	257, 731, 771
Bme18I	GGWCC	2 cut(s)	149, 434
BmeT110I	CYCGRG	2 cut(s)	170, 664
BmgT120I	GGNCC	2 cut(s)	149, 434
BmiI	GGNNCC	4 cut(s)	225, 331, 472, 504
BmrFI	CCNGG	3 cut(s)	257, 731, 771
BmsI	GCATC	2 cut(s)	150, 586
BpmI	CTGGAG	1 cut(s)	713
Bpu10I	CCTNAGC	1 cut(s)	219
BsaJI	CCNNGG	3 cut(s)	13, 393, 738
BsaWI	WCCGGW	1 cut(s)	146
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	2 cut(s)	443, 744
Bse1I	ACTGG	1 cut(s)	132
Bse3DI	GCAATG	1 cut(s)	220
BseBI	CCWGG	3 cut(s)	257, 731, 771
BseDI	CCNNGG	3 cut(s)	13, 393, 738
BseGI	GGATG	1 cut(s)	389
BseLI	CCNNNNNNNGG	2 cut(s)	443, 744
BseMI	GCAATG	1 cut(s)	220
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	1 cut(s)	132
BseSI	GKGCMC	1 cut(s)	879
BseX3I	CGGCCG	1 cut(s)	202
BseXI	GCAGC	3 cut(s)	243, 247, 881
BseYI	CCCAGC	1 cut(s)	872
BsgI	GTGCAG	2 cut(s)	370, 783
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	3 cut(s)	131, 204, 737
BshNI	GGYRCC	1 cut(s)	329
BsiEI	CGRYCG	1 cut(s)	205
BsiHKAI	GWGCWC	1 cut(s)	9
BsiHKCI	CYCGRG	2 cut(s)	170, 664
BsiSI	CCGG	1 cut(s)	147
BslI	CCNNNNNNNGG	2 cut(s)	443, 744
BsmAI	GTCTC	1 cut(s)	856
BsnI	GGCC	3 cut(s)	131, 204, 737
BsoBI	CYCGRG	2 cut(s)	170, 664
Bsp1286I	GDGCHC	3 cut(s)	9, 484, 879
Bsp143I	GATC	4 cut(s)	119, 351, 375, 537
Bsp19I	CCATGG	1 cut(s)	738
BspACI	CCGC	2 cut(s)	79, 205
BspANI	GGCC	3 cut(s)	131, 204, 737
BspCNI	CTCAG	1 cut(s)	108
BspLI	GGNNCC	4 cut(s)	225, 331, 472, 504
BspMI	ACCTGC	1 cut(s)	392
BspPI	GGATC	1 cut(s)	114
BspT107I	GGYRCC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	132
BssECI	CCNNGG	3 cut(s)	13, 393, 738
BssMI	GATC	4 cut(s)	119, 351, 375, 537
BssSI	CACGAG	1 cut(s)	475
BssT1I	CCWWGG	2 cut(s)	393, 738
Bst2BI	CACGAG	1 cut(s)	475
Bst2UI	CCWGG	3 cut(s)	257, 731, 771
Bst4CI	ACNGT	2 cut(s)	46, 587
Bst6I	CTCTTC	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	601
BstDEI	CTNAG	3 cut(s)	116, 219, 719
BstDSI	CCRYGG	2 cut(s)	13, 738
BstF5I	GGATG	1 cut(s)	389
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	2 cut(s)	52, 492
BstKTI	GATC	4 cut(s)	122, 354, 378, 540
BstMAI	GTCTC	1 cut(s)	856
BstMBI	GATC	4 cut(s)	119, 351, 375, 537
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	3 cut(s)	112, 210, 479
BstNI	CCWGG	3 cut(s)	257, 731, 771
BstNSI	RCATGY	1 cut(s)	675
BstSCI	CCNGG	3 cut(s)	255, 729, 769
BstSLI	GKGCMC	1 cut(s)	879
BstV1I	GCAGC	3 cut(s)	243, 247, 881
BstX2I	RGATCY	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	119
BstZI	CGGCCG	1 cut(s)	202
BsuRI	GGCC	3 cut(s)	131, 204, 737
BtgI	CCRYGG	2 cut(s)	13, 738
BtsCI	GGATG	1 cut(s)	389
BtsI	GCAGTG	2 cut(s)	214, 372
BtsIMutI	CAGTG	2 cut(s)	214, 372
BveI	ACCTGC	1 cut(s)	392
Cac8I	GCNNGC	1 cut(s)	601
CaiI	CAGNNNCTG	1 cut(s)	770
CfoI	GCGC	2 cut(s)	52, 492
Cfr13I	GGNCC	2 cut(s)	149, 434
Csp6I	GTAC	1 cut(s)	701
CspCI	CAANNNNNGTGG	4 cut(s)	144, 179, 412, 447
CviAII	CATG	4 cut(s)	499, 517, 672, 739
CviQI	GTAC	1 cut(s)	701
DdeI	CTNAG	3 cut(s)	116, 219, 719
DpnI	GATC	4 cut(s)	121, 353, 377, 539
DpnII	GATC	4 cut(s)	119, 351, 375, 537
EaeI	YGGCCR	2 cut(s)	129, 202
EagI	CGGCCG	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Ecl136II	GAGCTC	1 cut(s)	7
EclXI	CGGCCG	1 cut(s)	202
Eco130I	CCWWGG	2 cut(s)	393, 738
Eco24I	GRGCYC	2 cut(s)	9, 484
Eco47I	GGWCC	2 cut(s)	149, 434
Eco52I	CGGCCG	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	7
Eco88I	CYCGRG	2 cut(s)	170, 664
EcoICRI	GAGCTC	1 cut(s)	7
EcoRII	CCWGG	3 cut(s)	255, 729, 769
EcoT14I	CCWWGG	2 cut(s)	393, 738
EcoT38I	GRGCYC	2 cut(s)	9, 484
ErhI	CCWWGG	2 cut(s)	393, 738
FaeI	CATG	4 cut(s)	502, 520, 675, 742
FatI	CATG	4 cut(s)	498, 516, 671, 738
FbaI	TGATCA	2 cut(s)	351, 537
FblI	GTMKAC	1 cut(s)	41
Fnu4HI	GCNGC	4 cut(s)	205, 232, 261, 870
FokI	GGATG	1 cut(s)	376
FriOI	GRGCYC	2 cut(s)	9, 484
Fsp4HI	GCNGC	4 cut(s)	205, 232, 261, 870
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	2 cut(s)	51, 491
GluI	GCNGC	4 cut(s)	205, 232, 261, 870
GsaI	CCCAGC	1 cut(s)	876
GsuI	CTGGAG	1 cut(s)	713
HaeII	RGCGCY	1 cut(s)	53
HaeIII	GGCC	3 cut(s)	131, 204, 737
HapII	CCGG	1 cut(s)	147
HhaI	GCGC	2 cut(s)	52, 492
Hin1II	CATG	4 cut(s)	502, 520, 675, 742
Hin6I	GCGC	2 cut(s)	50, 490
HinP1I	GCGC	2 cut(s)	50, 490
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HindIII	AAGCTT	1 cut(s)	643
HinfI	GANTC	2 cut(s)	554, 778
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	5 cut(s)	136, 317, 583, 665, 773
Hpy166II	GTNNAC	2 cut(s)	42, 574
Hpy188I	TCNGA	2 cut(s)	184, 228
Hpy188III	TCNNGA	3 cut(s)	172, 506, 664
Hpy8I	GTNNAC	2 cut(s)	42, 574
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	5 cut(s)	187, 286, 517, 794, 850
HpyCH4III	ACNGT	2 cut(s)	46, 587
HpyCH4V	TGCA	5 cut(s)	387, 614, 764, 847, 894
HpyF10VI	GCNNNNNNNGC	3 cut(s)	112, 210, 479
HpyF3I	CTNAG	3 cut(s)	116, 219, 719
Hsp92II	CATG	4 cut(s)	502, 520, 675, 742
HspAI	GCGC	2 cut(s)	50, 490
Ksp22I	TGATCA	2 cut(s)	351, 537
Kzo9I	GATC	4 cut(s)	119, 351, 375, 537
LmnI	GCTCC	6 cut(s)	4, 12, 229, 470, 508, 681
Lsp1109I	GCAGC	3 cut(s)	243, 247, 881
LweI	GCATC	2 cut(s)	150, 586
MaeI	CTAG	1 cut(s)	95
MaeIII	GTNAC	1 cut(s)	779
MalI	GATC	4 cut(s)	121, 353, 377, 539
MboI	GATC	4 cut(s)	119, 351, 375, 537
MboII	GAAGA	3 cut(s)	121, 262, 818
MflI	RGATCY	1 cut(s)	119
MhlI	GDGCHC	3 cut(s)	9, 484, 879
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	5 cut(s)	299, 419, 546, 591, 848
MluNI	TGGCCA	1 cut(s)	131
MlyI	GAGTC	1 cut(s)	787
Mox20I	TGGCCA	1 cut(s)	131
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	1 cut(s)	545
Msp20I	TGGCCA	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	872
MspI	CCGG	1 cut(s)	147
MspR9I	CCNGG	3 cut(s)	257, 731, 771
MvaI	CCWGG	3 cut(s)	257, 731, 771
MwoI	GCNNNNNNNGC	3 cut(s)	112, 210, 479
NcoI	CCATGG	1 cut(s)	738
NdeII	GATC	4 cut(s)	119, 351, 375, 537
NlaIII	CATG	4 cut(s)	502, 520, 675, 742
NlaIV	GGNNCC	4 cut(s)	225, 331, 472, 504
NmuCI	GTSAC	1 cut(s)	779
NspI	RCATGY	1 cut(s)	675
PaeR7I	CTCGAG	1 cut(s)	664
PfeI	GAWTC	1 cut(s)	554
PfoI	TCCNGGA	2 cut(s)	729, 769
PkrI	GCNGC	4 cut(s)	206, 233, 262, 871
PleI	GAGTC	1 cut(s)	786
PpsI	GAGTC	1 cut(s)	786
Psp124BI	GAGCTC	1 cut(s)	9
Psp6I	CCWGG	3 cut(s)	255, 729, 769
PspFI	CCCAGC	1 cut(s)	872
PspGI	CCWGG	3 cut(s)	255, 729, 769
PspN4I	GGNNCC	4 cut(s)	225, 331, 472, 504
PspPI	GGNCC	2 cut(s)	149, 434
PstNI	CAGNNNCTG	1 cut(s)	770
PsuI	RGATCY	1 cut(s)	119
PvuII	CAGCTG	1 cut(s)	872
RsaI	GTAC	1 cut(s)	702
RsaNI	GTAC	1 cut(s)	701
SacI	GAGCTC	1 cut(s)	9
SalI	GTCGAC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	545
SatI	GCNGC	4 cut(s)	205, 232, 261, 870
Sau3AI	GATC	4 cut(s)	119, 351, 375, 537
Sau96I	GGNCC	2 cut(s)	149, 434
SchI	GAGTC	1 cut(s)	787
ScrFI	CCNGG	3 cut(s)	257, 731, 771
SduI	GDGCHC	3 cut(s)	9, 484, 879
SfaNI	GCATC	2 cut(s)	150, 586
Sfr274I	CTCGAG	1 cut(s)	664
SinI	GGWCC	2 cut(s)	149, 434
SlaI	CTCGAG	1 cut(s)	664
SmlI	CTYRAG	1 cut(s)	664
SmoI	CTYRAG	1 cut(s)	664
Sse9I	AATT	5 cut(s)	299, 419, 546, 591, 848
SsiI	CCGC	2 cut(s)	79, 205
SspMI	CTAG	1 cut(s)	95
SstI	GAGCTC	1 cut(s)	9
StyD4I	CCNGG	3 cut(s)	255, 729, 769
StyI	CCWWGG	2 cut(s)	393, 738
TaaI	ACNGT	2 cut(s)	46, 587
TaqI	TCGA	5 cut(s)	21, 41, 560, 627, 665
TasI	AATT	5 cut(s)	299, 419, 546, 591, 848
TauI	GCSGC	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	1 cut(s)	545
Tru9I	TTAA	1 cut(s)	545
TscAI	CASTG	2 cut(s)	214, 372
TseFI	GTSAC	1 cut(s)	779
TseI	GCWGC	3 cut(s)	231, 260, 869
Tsp45I	GTSAC	1 cut(s)	779
TspRI	CASTG	2 cut(s)	214, 372
VpaK11BI	GGWCC	2 cut(s)	149, 434
XceI	RCATGY	1 cut(s)	675
XhoI	CTCGAG	1 cut(s)	664
XmiI	GTMKAC	1 cut(s)	41
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.