Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8324669.1

Orthogroup ID

OG0001338

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 904

Gene Structure 904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8324669.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 689 bp

gtgcatatgagaatgacctgttgcaaatggttcttgagggtgccaaaaacagtgacctaagccaagcggaaactgatcggttcattgttgataactgcaagaacatctacttggctggttatgagaccactgcagtctctgccacatggttgctcatgttgttggcttcaaatcaagaatggcaagaacgagtccgcgccgaggttcttcaagtttgtggtggccagattccagatgctgacatgctccgtaagatgaaacagctaacaatggtaattcacgaatcgttgcgtctctatccaccggtgtctgtggtatcaagggaggccttcaaggatatgaaatttgggggcatatttgttcccaagggtgtgaacctatgggttatggtactgacattgcacacggaccctgaagtatggggaccagatgcctacaagttcaacccagaaagatttgcaaatggaattactggggcttgtaagcttcctcacttgtacatgccatttggggttggaccaagagtgtgtcttgggcagaacttggccatgattgagctcaaaatactagtagctcttattctctctaaattttctttctccctatcttccaagtactgccacaaaccagcaataaggttggtcattgagcctgagcagggagtcaatctcttagtgaagaagttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0010268 GO:0010817 GO:0016128 GO:0016131 GO:0016491 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

228

Amino Acids

25.62

Weight (kDa)

7.81

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001338)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41150 FvH4_3g41150 FvH4_3g41220 FvH4_6g00880
malus_domestica	MD03G1046700.v1.1 MD03G1046800.v1.1 MD03G1046900.v1.1 MD11G1049600.v1.1 MD14G1091100.v1.1
prunus_persica	Prupe.6G038100_v2.0.a1 Prupe.6G038200_v2.0.a1
pyrus_communis	pycom03g03670 pycom03g03680 pycom03g03690 pycom03g03700 pycom11g03990
rosa_chinensis	RchiOBHm_Chr3g0448361 RchiOBHm_Chr5g0073931 RchiOBHm_Chr5g0073981
rosa_laevigata	RLG00000025921 RLG00000036409 RLG00000036426 RLG00000036428 RLG00000036435 RLG00000036436
rosa_multiflora	Rmu_co8324669.1_g000001 Rmu_co8391719.1_g000001 Rmu_co8502647.1_g000001 Rmu_sc0000470.1_g000021 Rmu_sc0012303.1_g000003 Rmu_sc0015167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00007390 Rroxscaffold_1G00007440 Rroxscaffold_6G00426550
rosa_rugosa	Rorug02G0611700 Rorug05G0427600 Rorug05G0427700 Rorug05G0427800 Rorug05G0428200
rosa_samantha	Rh3AG010900 Rh3BG010700 Rh3CG010400 Rh3DG011100 Rh5AG484500 Rh5AG485200 Rh5BG505200 Rh5BG505600 Rh5CG529000 Rh5CG529300 Rh5DG517600 Rh5DG517900
rosa_wichuraiana	Rw3G000850 Rw5G045040 Rw5G045050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	40
AccII	CGCG	1 cut(s)	197
AciI	CCGC	2 cut(s)	67, 195
AcoI	YGGCCR	2 cut(s)	222, 545
AcsI	RAATTY	2 cut(s)	343, 589
AcuI	CTGAAG	1 cut(s)	434
AfaI	GTAC	3 cut(s)	392, 499, 616
AfiI	CCNNNNNNNGG	2 cut(s)	201, 658
AgeI	ACCGGT	1 cut(s)	303
AgsI	TTSAA	4 cut(s)	170, 211, 333, 444
AhlI	ACTAGT	1 cut(s)	567
AjuI	GAANNNNNNNTTGG	2 cut(s)	94, 126
AluBI	AGCT	4 cut(s)	264, 486, 558, 574
AluI	AGCT	4 cut(s)	264, 486, 558, 574
Alw21I	GWGCWC	1 cut(s)	560
Alw26I	GTCTC	3 cut(s)	118, 141, 298
AlwNI	CAGNNNCTG	2 cut(s)	139, 238
AoxI	GGCC	3 cut(s)	222, 326, 545
ApoI	RAATTY	2 cut(s)	343, 589
AsiGI	ACCGGT	1 cut(s)	303
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	3 cut(s)	408, 424, 517
AvaII	GGWCC	3 cut(s)	408, 424, 517
BalI	TGGCCA	2 cut(s)	224, 547
BanI	GGYRCC	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	560
Bbv12I	GWGCWC	1 cut(s)	560
BcoDI	GTCTC	3 cut(s)	118, 141, 298
BcuI	ACTAGT	1 cut(s)	567
BfaI	CTAG	1 cut(s)	568
BfmI	CTRYAG	1 cut(s)	131
BmcAI	AGTACT	1 cut(s)	616
Bme18I	GGWCC	3 cut(s)	408, 424, 517
BmgT120I	GGNCC	3 cut(s)	408, 424, 517
BmiI	GGNNCC	3 cut(s)	42, 410, 425
BmrI	ACTGGG	1 cut(s)	482
BmsI	GCATC	2 cut(s)	225, 420
BmuI	ACTGGG	1 cut(s)	482
BplI	GAGNNNNNCTC	2 cut(s)	653, 685
Bpu10I	CCTNAGC	2 cut(s)	58, 653
BpuEI	CTTGAG	1 cut(s)	55
BsaI	GGTCTC	1 cut(s)	118
BsaJI	CCNNGG	2 cut(s)	200, 365
BsaWI	WCCGGW	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	2 cut(s)	201, 658
Bse118I	RCCGGY	1 cut(s)	303
Bse1I	ACTGG	1 cut(s)	477
Bse3DI	GCAATG	1 cut(s)	397
BseDI	CCNNGG	2 cut(s)	200, 365
BseLI	CCNNNNNNNGG	2 cut(s)	201, 658
BseMI	GCAATG	1 cut(s)	397
BseMII	CTCAG	1 cut(s)	644
BseNI	ACTGG	1 cut(s)	477
Bsh1236I	CGCG	1 cut(s)	197
BshFI	GGCC	3 cut(s)	224, 328, 547
BshNI	GGYRCC	1 cut(s)	40
BshTI	ACCGGT	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	560
BsiSI	CCGG	1 cut(s)	304
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	2 cut(s)	201, 658
BsmAI	GTCTC	3 cut(s)	118, 141, 298
BsmBI	CGTCTC	1 cut(s)	298
BsmFI	GGGAC	1 cut(s)	437
BsnI	GGCC	3 cut(s)	224, 328, 547
Bso31I	GGTCTC	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	560
Bsp1407I	TGTACA	1 cut(s)	497
Bsp143I	GATC	1 cut(s)	75
BspACI	CCGC	2 cut(s)	67, 195
BspANI	GGCC	3 cut(s)	224, 328, 547
BspCNI	CTCAG	1 cut(s)	645
BspFNI	CGCG	1 cut(s)	197
BspLI	GGNNCC	3 cut(s)	42, 410, 425
BspMAI	CTGCAG	1 cut(s)	135
BspT107I	GGYRCC	1 cut(s)	40
BspTNI	GGTCTC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	397
BsrFI	RCCGGY	1 cut(s)	303
BsrGI	TGTACA	1 cut(s)	497
BsrI	ACTGG	1 cut(s)	477
BssAI	RCCGGY	1 cut(s)	303
BssECI	CCNNGG	2 cut(s)	200, 365
BssMI	GATC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	365
Bst4CI	ACNGT	1 cut(s)	52
BstAPI	GCANNNNNTGC	1 cut(s)	139
BstAUI	TGTACA	1 cut(s)	497
BstDEI	CTNAG	3 cut(s)	58, 653, 672
BstFNI	CGCG	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	1 cut(s)	78
BstMAI	GTCTC	3 cut(s)	118, 141, 298
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstNSI	RCATGY	2 cut(s)	246, 504
BstSFI	CTRYAG	1 cut(s)	131
BstUI	CGCG	1 cut(s)	197
BsuRI	GGCC	3 cut(s)	224, 328, 547
BtsI	GCAGTG	1 cut(s)	128
BtsIMutI	CAGTG	2 cut(s)	57, 128
CaiI	CAGNNNCTG	2 cut(s)	139, 238
CfoI	GCGC	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	303
Cfr13I	GGNCC	3 cut(s)	408, 424, 517
CseI	GACGC	1 cut(s)	280
Csp6I	GTAC	3 cut(s)	391, 498, 615
CspAI	ACCGGT	1 cut(s)	303
CviAII	CATG	5 cut(s)	146, 156, 243, 501, 549
CviQI	GTAC	3 cut(s)	391, 498, 615
DdeI	CTNAG	3 cut(s)	58, 653, 672
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
EaeI	YGGCCR	2 cut(s)	222, 545
Ecl136II	GAGCTC	1 cut(s)	558
Eco130I	CCWWGG	1 cut(s)	365
Eco147I	AGGCCT	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	560
Eco31I	GGTCTC	1 cut(s)	118
Eco47I	GGWCC	3 cut(s)	408, 424, 517
Eco53kI	GAGCTC	1 cut(s)	558
Eco57I	CTGAAG	1 cut(s)	434
EcoICRI	GAGCTC	1 cut(s)	558
EcoT14I	CCWWGG	1 cut(s)	365
EcoT38I	GRGCYC	1 cut(s)	560
ErhI	CCWWGG	1 cut(s)	365
Esp3I	CGTCTC	1 cut(s)	298
FaeI	CATG	5 cut(s)	149, 159, 246, 504, 552
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	5 cut(s)	145, 155, 242, 500, 548
FauNDI	CATATG	1 cut(s)	6
FriOI	GRGCYC	1 cut(s)	560
FspBI	CTAG	1 cut(s)	568
GlaI	GCGC	1 cut(s)	198
HaeIII	GGCC	3 cut(s)	224, 328, 547
HapII	CCGG	1 cut(s)	304
HgaI	GACGC	1 cut(s)	280
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	5 cut(s)	149, 159, 246, 504, 552
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HindIII	AAGCTT	1 cut(s)	484
HinfI	GANTC	4 cut(s)	191, 228, 283, 662
HpaII	CCGG	1 cut(s)	304
Hpy166II	GTNNAC	1 cut(s)	375
Hpy188III	TCNNGA	4 cut(s)	34, 175, 232, 280
Hpy8I	GTNNAC	1 cut(s)	375
HpyAV	CCTTC	1 cut(s)	339
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	6 cut(s)	4, 24, 98, 133, 402, 460
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	3 cut(s)	58, 653, 672
Hsp92II	CATG	5 cut(s)	149, 159, 246, 504, 552
HspAI	GCGC	1 cut(s)	197
Kzo9I	GATC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	251
LweI	GCATC	2 cut(s)	225, 420
MaeI	CTAG	1 cut(s)	568
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	2 cut(s)	199, 599
MhlI	GDGCHC	1 cut(s)	560
MlsI	TGGCCA	2 cut(s)	224, 547
MluCI	AATT	4 cut(s)	275, 343, 467, 589
MluNI	TGGCCA	2 cut(s)	224, 547
MlyI	GAGTC	2 cut(s)	200, 671
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	4 cut(s)	30, 195, 318, 500
Mox20I	TGGCCA	2 cut(s)	224, 547
MscI	TGGCCA	2 cut(s)	224, 547
Msp20I	TGGCCA	2 cut(s)	224, 547
MspI	CCGG	1 cut(s)	304
MvnI	CGCG	1 cut(s)	197
MwoI	GCNNNNNNNGC	1 cut(s)	139
NdeI	CATATG	1 cut(s)	6
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	5 cut(s)	149, 159, 246, 504, 552
NlaIV	GGNNCC	3 cut(s)	42, 410, 425
NmeAIII	GCCGAG	1 cut(s)	225
NmuCI	GTSAC	1 cut(s)	52
NspI	RCATGY	2 cut(s)	246, 504
PceI	AGGCCT	1 cut(s)	328
PfeI	GAWTC	2 cut(s)	228, 283
PinAI	ACCGGT	1 cut(s)	303
PleI	GAGTC	2 cut(s)	199, 670
PpsI	GAGTC	2 cut(s)	199, 670
Psp124BI	GAGCTC	1 cut(s)	560
PspN4I	GGNNCC	3 cut(s)	42, 410, 425
PspPI	GGNCC	3 cut(s)	408, 424, 517
PstI	CTGCAG	1 cut(s)	135
PstNI	CAGNNNCTG	2 cut(s)	139, 238
RsaI	GTAC	3 cut(s)	392, 499, 616
RsaNI	GTAC	3 cut(s)	391, 498, 615
SacI	GAGCTC	1 cut(s)	560
Sau3AI	GATC	1 cut(s)	75
Sau96I	GGNCC	3 cut(s)	408, 424, 517
ScaI	AGTACT	1 cut(s)	616
SchI	GAGTC	2 cut(s)	200, 671
SduI	GDGCHC	1 cut(s)	560
SetI	ASST	9 cut(s)	20, 59, 206, 266, 380, 488, 560, 576, 640
SfaNI	GCATC	2 cut(s)	225, 420
SfcI	CTRYAG	1 cut(s)	131
SgrAI	CRCCGGYG	1 cut(s)	303
SinI	GGWCC	3 cut(s)	408, 424, 517
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
SpeI	ACTAGT	1 cut(s)	567
Sse9I	AATT	4 cut(s)	275, 343, 467, 589
SseBI	AGGCCT	1 cut(s)	328
SsiI	CCGC	2 cut(s)	67, 195
SspMI	CTAG	1 cut(s)	568
SstI	GAGCTC	1 cut(s)	560
StuI	AGGCCT	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	1 cut(s)	52
TasI	AATT	4 cut(s)	275, 343, 467, 589
TatI	WGTACW	2 cut(s)	497, 614
TfiI	GAWTC	2 cut(s)	228, 283
TscAI	CASTG	2 cut(s)	57, 135
TseFI	GTSAC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	3 cut(s)	72, 271, 355
TspGWI	ACGGA	2 cut(s)	238, 421
TspRI	CASTG	2 cut(s)	57, 135
VpaK11BI	GGWCC	3 cut(s)	408, 424, 517
XapI	RAATTY	2 cut(s)	343, 589
XceI	RCATGY	2 cut(s)	246, 504
XspI	CTAG	1 cut(s)	568
ZrmI	AGTACT	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.