Rh3AG010900

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Forward (+)
668575 .. 671058
2484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG010900.1

Sequence Viewer

Length: 1356 bp
ATGGAGCCTGAAAAGATGTTCATGTCCTTTGCGTTGCTTGCTTTCCTGGGTTTATTTGCTCGTCTATACAATGCCTTGGTGATGAAGCCGGAGAAGCTAAGATCAATCCTGAGGAAGCAAGGCATTGTTGGACCGCCTCCTACCTTCTTGCTCGGAAATATCAAGGAGATCAAGAAGGCTCAAAAGTCCCCAACCCAAGACGCTACCATTACTCAACTCCTAGCCTCCCACAACCTTGCTGCTACTCTCTTTCCCTTCTTTGAAGAATGGAGAAACAAATATGGTCAAGTGTTCAACTTCTCCCTTGGCAACACACAAATATTGTATGTGAATGAATCTGAAGCTGTGAGAGAAATAACCACATGCACATCTTTGGACTTGGGGAAGCCTACCTATCAGTTCAAAGAGCGTGGCCCTTTGCTTGGCCAAGGCATTCTAACTTCAAATGGTGCTGTTTGGGCACATCAGAGAAAAGTCCTTGCTCCACAATTATACATGGACAAGGTTAAGGGGATGATAAATCTTATCACAGAATCTGCGATTACATTGCAAGAGTCATGGAAAAGTAGGATTGATGAAGAGGGTGGGGTGGCAGATATCAATATTGATGAGGACATGAGAAGCTTCTCGGGAGATGTTATCTCAAGAGCTTGTTTTGGAAGCAACTTTGCCAGTGGGCAAGTGATCTTTCACAAACTAAGAGATCTCCAAGAAGCCATGTCTAGGAAATGCTTGGCCACAGGGATTCCTGGAATGAGGCATCTTCCTACAAAGAACAGAAGAGAAGCATGGAGACTAGAAAAAGAGGTTCACAATTTGATACTCCAAGTTGTGAAGCAGAGAGCAGAAGGTGCATATGAGAATGACCTGTTGCAAATGGTTCTTGAGGGTGCCAAAAACAGTGACCTAAGCCAAGCGGAAACTGATCGGTTCATTGTTGATAACTGCAAGAACATCTACTTGGCTGGTTATGAGACCACTGCAGTCTCTGCCACATGGTTGCTCATGTTGTTGGCTTCAAATCAAGAATGGCAAGAACGCGTCCGCGCTGAGGTTCTTCAAGTTTGTGGTGGTCAGATTCCAGATGCTGACATGCTCCGTAAGATGAAACAGGTACTAATATATAGTGGTATACGTATTGGCATAAAATATGTACTTCCACTTTTCTTTCACACAATGAAAAATATTTGGTTTGTATTTGCAGCTAACAATGGTAATTCACGAATCGTTGCGTCTCTATCCACCGGTGTCTGTGGTATCAAGGGAGGCCTTCAAGGATATGAAATTTGGGGGCATATTTGTTCCCAAGGGTGTGAACCTATGGGTTATGGTACTGACATTGCACACGGACCCTGA

Protein Analysis

451

Amino Acids

50.51

Weight (kDa)

8.64

Isoelectric Point (pI)

38.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 81 - 370 1.8e-38 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 890
AccI GTMKAC 1 cut(s) 1132
AccII CGCG 2 cut(s) 1041, 1047
AciI CCGC 3 cut(s) 134, 917, 1045
AcoI YGGCCR 2 cut(s) 424, 735
AcsI RAATTY 1 cut(s) 1284
AcuI CTGAAG 1 cut(s) 360
AfaI GTAC 3 cut(s) 1116, 1155, 1333
AfiI CCNNNNNNNGG 3 cut(s) 422, 723, 1051
AflIII ACRYGT 1 cut(s) 1039
AgeI ACCGGT 1 cut(s) 1244
AgsI TTSAA 7 cut(s) 263, 295, 403, 444, 1020, 1061, 1274
AjnI CCWGG 2 cut(s) 45, 748
AjuI GAANNNNNNNTTGG 2 cut(s) 944, 976
AluBI AGCT 5 cut(s) 97, 344, 624, 650, 1205
AluI AGCT 5 cut(s) 97, 344, 624, 650, 1205
Alw26I GTCTC 4 cut(s) 787, 968, 991, 1239
AlwNI CAGNNNCTG 3 cut(s) 536, 989, 1088
Ama87I CYCGRG 1 cut(s) 628
AoxI GGCC 4 cut(s) 412, 424, 735, 1267
ApeKI GCWGC 2 cut(s) 239, 1202
ApoI RAATTY 1 cut(s) 1284
AsiGI ACCGGT 1 cut(s) 1244
AspLEI GCGC 1 cut(s) 1049
AspS9I GGNCC 3 cut(s) 131, 413, 1349
AsuHPI GGTGA 1 cut(s) 91
AvaI CYCGRG 1 cut(s) 628
AvaII GGWCC 2 cut(s) 131, 1349
AxyI CCTNAGG 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 463
BalI TGGCCA 2 cut(s) 426, 737
BanI GGYRCC 1 cut(s) 890
BbvCI CCTCAGC 1 cut(s) 1050
BbvI GCAGC 2 cut(s) 226, 1214
BcgI CGANNNNNNTGC 2 cut(s) 529, 563
BciT130I CCWGG 2 cut(s) 47, 750
BcoDI GTCTC 4 cut(s) 787, 968, 991, 1239
BfaI CTAG 3 cut(s) 221, 723, 797
BfmI CTRYAG 1 cut(s) 981
BglII AGATCT 1 cut(s) 703
BisI GCNGC 2 cut(s) 240, 1203
BlsI GCNGC 2 cut(s) 241, 1204
Bme1390I CCNGG 2 cut(s) 47, 750
Bme18I GGWCC 2 cut(s) 131, 1349
BmeT110I CYCGRG 1 cut(s) 628
BmgT120I GGNCC 3 cut(s) 131, 413, 1349
BmiI GGNNCC 3 cut(s) 6, 892, 1351
BmrFI CCNGG 2 cut(s) 47, 750
BmsI GCATC 2 cut(s) 769, 1075
Bpu10I CCTNAGC 2 cut(s) 908, 1050
BpuEI CTTGAG 2 cut(s) 628, 905
BsaAI YACGTR 1 cut(s) 1136
BsaI GGTCTC 1 cut(s) 968
BsaJI CCNNGG 5 cut(s) 46, 75, 304, 427, 1306
BsaWI WCCGGW 1 cut(s) 1244
Bsc4I CCNNNNNNNGG 3 cut(s) 422, 723, 1051
Bse118I RCCGGY 1 cut(s) 1244
Bse1I ACTGG 1 cut(s) 672
Bse21I CCTNAGG 1 cut(s) 110
Bse3DI GCAATG 2 cut(s) 545, 1338
BseBI CCWGG 2 cut(s) 47, 750
BseDI CCNNGG 5 cut(s) 46, 75, 304, 427, 1306
BseGI GGATG 1 cut(s) 519
BseLI CCNNNNNNNGG 3 cut(s) 422, 723, 1051
BseMI GCAATG 2 cut(s) 545, 1338
BseMII CTCAG 2 cut(s) 101, 1041
BseNI ACTGG 1 cut(s) 672
BseSI GKGCMC 1 cut(s) 463
BseXI GCAGC 2 cut(s) 226, 1214
Bsh1236I CGCG 2 cut(s) 1041, 1047
BshFI GGCC 4 cut(s) 414, 426, 737, 1269
BshNI GGYRCC 1 cut(s) 890
BshTI ACCGGT 1 cut(s) 1244
BsiHKCI CYCGRG 1 cut(s) 628
BsiSI CCGG 2 cut(s) 89, 1245
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 3 cut(s) 422, 723, 1051
BsmAI GTCTC 4 cut(s) 787, 968, 991, 1239
BsmBI CGTCTC 1 cut(s) 1239
BsmFI GGGAC 1 cut(s) 172
BsmI GAATGC 1 cut(s) 432
BsnI GGCC 4 cut(s) 414, 426, 737, 1269
Bso31I GGTCTC 1 cut(s) 968
BsoBI CYCGRG 1 cut(s) 628
Bsp1286I GDGCHC 1 cut(s) 463
Bsp143I GATC 5 cut(s) 101, 168, 684, 703, 925
BspACI CCGC 3 cut(s) 134, 917, 1045
BspANI GGCC 4 cut(s) 414, 426, 737, 1269
BspCNI CTCAG 2 cut(s) 102, 1042
BspFNI CGCG 2 cut(s) 1041, 1047
BspLI GGNNCC 3 cut(s) 6, 892, 1351
BspMAI CTGCAG 1 cut(s) 985
BspT107I GGYRCC 1 cut(s) 890
BspTNI GGTCTC 1 cut(s) 968
BsrDI GCAATG 2 cut(s) 545, 1338
BsrFI RCCGGY 1 cut(s) 1244
BsrI ACTGG 1 cut(s) 672
BssAI RCCGGY 1 cut(s) 1244
BssECI CCNNGG 5 cut(s) 46, 75, 304, 427, 1306
BssMI GATC 5 cut(s) 101, 168, 684, 703, 925
BssNAI GTATAC 1 cut(s) 1133
BssT1I CCWWGG 4 cut(s) 75, 304, 427, 1306
Bst1107I GTATAC 1 cut(s) 1133
Bst2UI CCWGG 2 cut(s) 47, 750
Bst4CI ACNGT 1 cut(s) 902
Bst6I CTCTTC 2 cut(s) 573, 775
BstAPI GCANNNNNTGC 2 cut(s) 851, 989
BstBAI YACGTR 1 cut(s) 1136
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 5 cut(s) 98, 110, 698, 908, 1050
BstF5I GGATG 1 cut(s) 519
BstFNI CGCG 2 cut(s) 1041, 1047
BstHHI GCGC 1 cut(s) 1049
BstKTI GATC 5 cut(s) 104, 171, 687, 706, 928
BstMAI GTCTC 4 cut(s) 787, 968, 991, 1239
BstMBI GATC 5 cut(s) 101, 168, 684, 703, 925
BstMWI GCNNNNNNNGC 5 cut(s) 38, 94, 458, 851, 989
BstNI CCWGG 2 cut(s) 47, 750
BstNSI RCATGY 2 cut(s) 366, 1096
BstSCI CCNGG 2 cut(s) 45, 748
BstSFI CTRYAG 1 cut(s) 981
BstSLI GKGCMC 1 cut(s) 463
BstSNI TACGTA 1 cut(s) 1136
BstUI CGCG 2 cut(s) 1041, 1047
BstV1I GCAGC 2 cut(s) 226, 1214
BstX2I RGATCY 1 cut(s) 703
BstYI RGATCY 1 cut(s) 703
BstZ17I GTATAC 1 cut(s) 1133
Bsu36I CCTNAGG 1 cut(s) 110
BsuRI GGCC 4 cut(s) 414, 426, 737, 1269
BtsCI GGATG 1 cut(s) 519
BtsI GCAGTG 1 cut(s) 978
BtsIMutI CAGTG 3 cut(s) 679, 907, 978
Cac8I GCNNGC 1 cut(s) 39
CaiI CAGNNNCTG 3 cut(s) 536, 989, 1088
CfoI GCGC 1 cut(s) 1049
Cfr10I RCCGGY 1 cut(s) 1244
Cfr13I GGNCC 3 cut(s) 131, 413, 1349
CseI GACGC 3 cut(s) 209, 1030, 1221
Csp6I GTAC 3 cut(s) 1115, 1154, 1332
CspAI ACCGGT 1 cut(s) 1244
CspCI CAANNNNNGTGG 2 cut(s) 391, 426
CviQI GTAC 3 cut(s) 1115, 1154, 1332
DdeI CTNAG 5 cut(s) 98, 110, 698, 908, 1050
DpnI GATC 5 cut(s) 103, 170, 686, 705, 927
DpnII GATC 5 cut(s) 101, 168, 684, 703, 925
EaeI YGGCCR 2 cut(s) 424, 735
Eam1104I CTCTTC 2 cut(s) 573, 775
EarI CTCTTC 2 cut(s) 573, 775
Eco105I TACGTA 1 cut(s) 1136
Eco130I CCWWGG 4 cut(s) 75, 304, 427, 1306
Eco147I AGGCCT 1 cut(s) 1269
Eco31I GGTCTC 1 cut(s) 968
Eco32I GATATC 1 cut(s) 598
Eco47I GGWCC 2 cut(s) 131, 1349
Eco57I CTGAAG 1 cut(s) 360
Eco81I CCTNAGG 1 cut(s) 110
Eco88I CYCGRG 1 cut(s) 628
EcoRII CCWGG 2 cut(s) 45, 748
EcoRV GATATC 1 cut(s) 598
EcoT14I CCWWGG 4 cut(s) 75, 304, 427, 1306
ErhI CCWWGG 4 cut(s) 75, 304, 427, 1306
Esp3I CGTCTC 1 cut(s) 1239
FaqI GGGAC 1 cut(s) 172
FauNDI CATATG 1 cut(s) 856
FblI GTMKAC 1 cut(s) 1132
Fnu4HI GCNGC 2 cut(s) 240, 1203
FokI GGATG 1 cut(s) 526
Fsp4HI GCNGC 2 cut(s) 240, 1203
FspBI CTAG 3 cut(s) 221, 723, 797
GlaI GCGC 1 cut(s) 1048
GluI GCNGC 2 cut(s) 240, 1203
HaeIII GGCC 4 cut(s) 414, 426, 737, 1269
HapII CCGG 2 cut(s) 89, 1245
HgaI GACGC 3 cut(s) 209, 1030, 1221
HhaI GCGC 1 cut(s) 1049
Hin6I GCGC 1 cut(s) 1047
HinP1I GCGC 1 cut(s) 1047
HindIII AAGCTT 1 cut(s) 622
HinfI GANTC 6 cut(s) 335, 533, 554, 745, 1078, 1224
HpaII CCGG 2 cut(s) 89, 1245
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 3 cut(s) 811, 1133, 1316
Hpy188I TCNGA 4 cut(s) 155, 340, 468, 1077
Hpy188III TCNNGA 8 cut(s) 109, 172, 630, 645, 884, 1025, 1082, 1221
Hpy8I GTNNAC 3 cut(s) 811, 1133, 1316
HpyAV CCTTC 5 cut(s) 154, 169, 265, 842, 1280
HpyCH4III ACNGT 1 cut(s) 902
HpyCH4IV ACGT 1 cut(s) 1135
HpyCH4V TGCA 8 cut(s) 366, 550, 854, 874, 948, 983, 1202, 1343
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 94, 458, 851, 989
HpyF3I CTNAG 5 cut(s) 98, 110, 698, 908, 1050
HpySE526I ACGT 1 cut(s) 1135
HspAI GCGC 1 cut(s) 1047
Kzo9I GATC 5 cut(s) 101, 168, 684, 703, 925
LmnI GCTCC 3 cut(s) 4, 487, 1101
Lsp1109I GCAGC 2 cut(s) 226, 1214
LweI GCATC 2 cut(s) 769, 1075
MaeI CTAG 3 cut(s) 221, 723, 797
MaeII ACGT 1 cut(s) 1135
MaeIII GTNAC 1 cut(s) 902
MalI GATC 5 cut(s) 103, 170, 686, 705, 927
MboI GATC 5 cut(s) 101, 168, 684, 703, 925
MboII GAAGA 5 cut(s) 275, 590, 755, 792, 1049
MflI RGATCY 1 cut(s) 703
MhlI GDGCHC 1 cut(s) 463
MlsI TGGCCA 2 cut(s) 426, 737
MluCI AATT 4 cut(s) 488, 814, 1216, 1284
MluI ACGCGT 1 cut(s) 1039
MluNI TGGCCA 2 cut(s) 426, 737
MlyI GAGTC 1 cut(s) 563
MmeI TCCRAC 1 cut(s) 109
Mox20I TGGCCA 2 cut(s) 426, 737
MscI TGGCCA 2 cut(s) 426, 737
MseI TTAA 1 cut(s) 507
Msp20I TGGCCA 2 cut(s) 426, 737
MspI CCGG 2 cut(s) 89, 1245
MspR9I CCNGG 2 cut(s) 47, 750
Mva1269I GAATGC 1 cut(s) 432
MvaI CCWGG 2 cut(s) 47, 750
MvnI CGCG 2 cut(s) 1041, 1047
MwoI GCNNNNNNNGC 5 cut(s) 38, 94, 458, 851, 989
NdeI CATATG 1 cut(s) 856
NdeII GATC 5 cut(s) 101, 168, 684, 703, 925
NlaIV GGNNCC 3 cut(s) 6, 892, 1351
NmuCI GTSAC 1 cut(s) 902
NspI RCATGY 2 cut(s) 366, 1096
PceI AGGCCT 1 cut(s) 1269
PctI GAATGC 1 cut(s) 432
PfeI GAWTC 5 cut(s) 335, 533, 745, 1078, 1224
PfoI TCCNGGA 1 cut(s) 748
PinAI ACCGGT 1 cut(s) 1244
PkrI GCNGC 2 cut(s) 241, 1204
PleI GAGTC 1 cut(s) 562
PpsI GAGTC 1 cut(s) 562
Ppu21I YACGTR 1 cut(s) 1136
Psp6I CCWGG 2 cut(s) 45, 748
PspGI CCWGG 2 cut(s) 45, 748
PspN4I GGNNCC 3 cut(s) 6, 892, 1351
PspPI GGNCC 3 cut(s) 131, 413, 1349
PstI CTGCAG 1 cut(s) 985
PstNI CAGNNNCTG 3 cut(s) 536, 989, 1088
PsuI RGATCY 1 cut(s) 703
RsaI GTAC 3 cut(s) 1116, 1155, 1333
RsaNI GTAC 3 cut(s) 1115, 1154, 1332
SaqAI TTAA 1 cut(s) 507
SatI GCNGC 2 cut(s) 240, 1203
Sau3AI GATC 5 cut(s) 101, 168, 684, 703, 925
Sau96I GGNCC 3 cut(s) 131, 413, 1349
SchI GAGTC 1 cut(s) 563
ScrFI CCNGG 2 cut(s) 47, 750
SduI GDGCHC 1 cut(s) 463
SfaNI GCATC 2 cut(s) 769, 1075
SfcI CTRYAG 1 cut(s) 981
SgrAI CRCCGGYG 1 cut(s) 1244
SinI GGWCC 2 cut(s) 131, 1349
SmlI CTYRAG 2 cut(s) 643, 884
SmoI CTYRAG 2 cut(s) 643, 884
SnaBI TACGTA 1 cut(s) 1136
Sse9I AATT 4 cut(s) 488, 814, 1216, 1284
SseBI AGGCCT 1 cut(s) 1269
SsiI CCGC 3 cut(s) 134, 917, 1045
SspI AATATT 3 cut(s) 321, 604, 1186
SspMI CTAG 3 cut(s) 221, 723, 797
StuI AGGCCT 1 cut(s) 1269
StyD4I CCNGG 2 cut(s) 45, 748
StyI CCWWGG 4 cut(s) 75, 304, 427, 1306
TaaI ACNGT 1 cut(s) 902
TaiI ACGT 1 cut(s) 1138
TasI AATT 4 cut(s) 488, 814, 1216, 1284
TatI WGTACW 1 cut(s) 1153
TfiI GAWTC 5 cut(s) 335, 533, 745, 1078, 1224
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TscAI CASTG 3 cut(s) 679, 907, 985
TseFI GTSAC 1 cut(s) 902
TseI GCWGC 2 cut(s) 239, 1202
Tsp45I GTSAC 1 cut(s) 902
TspDTI ATGAA 8 cut(s) 10, 98, 348, 591, 922, 1121, 1193, 1296
TspGWI ACGGA 1 cut(s) 1088
TspRI CASTG 3 cut(s) 679, 907, 985
VpaK11BI GGWCC 2 cut(s) 131, 1349
XapI RAATTY 1 cut(s) 1284
XceI RCATGY 2 cut(s) 366, 1096
XmiI GTMKAC 1 cut(s) 1132
XspI CTAG 3 cut(s) 221, 723, 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.