Rorug05G0428200

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
59580043 .. 59580463
421 bp
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UTR
Exon/CDS
Intron
Rorug05G0428200.1

Sequence Viewer

Length: 273 bp
ATGTATTCAGCCGCCCCTCTTCCACTGGCACATGCTCATGTGGCATCATCATCCTCGTCCAAGACAAATCCAGAGAAGGCGAAAAATGATGCAATGAAGAAGGTGGCATGTGTGGCTGAGCTTCTGGTCGAAGCAATGAATGGTGGGGTGAAGGAGTTGTTTATAAACGAGAAGCGAATTGAGCTTGAAATCCAAGCATTGGCTGCCACCATTTCGCGCTTCATCAAGCAGACTGATAAGTGGTTATCAGTCGCCCGCATCTCAGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

90

Amino Acids

9.83

Weight (kDa)

7.88

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GCN5L1 PF06320 11 - 85 7.4e-17 GCN5-like protein 1 (GCN5L1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 164
AccB7I CCANNNNNTGG 1 cut(s) 199
AccII CGCG 1 cut(s) 217
AciI CCGC 2 cut(s) 12, 256
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 1 cut(s) 188
AluBI AGCT 2 cut(s) 121, 184
AluI AGCT 2 cut(s) 121, 184
ApeKI GCWGC 1 cut(s) 203
AspLEI GCGC 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 160
BbvI GCAGC 1 cut(s) 190
BisI GCNGC 2 cut(s) 12, 204
BlpI GCTNAGC 1 cut(s) 117
BlsI GCNGC 2 cut(s) 13, 205
BmsI GCATC 3 cut(s) 53, 79, 267
Bpu1102I GCTNAGC 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse1I ACTGG 1 cut(s) 30
Bse3DI GCAATG 2 cut(s) 99, 141
BseGI GGATG 1 cut(s) 50
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMI GCAATG 2 cut(s) 99, 141
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 190
Bsh1236I CGCG 1 cut(s) 217
BslI CCNNNNNNNGG 1 cut(s) 199
Bsp1720I GCTNAGC 1 cut(s) 117
BspACI CCGC 2 cut(s) 12, 256
BspCNI CTCAG 1 cut(s) 109
BspFNI CGCG 1 cut(s) 217
BsrDI GCAATG 2 cut(s) 99, 141
BsrI ACTGG 1 cut(s) 30
Bst6I CTCTTC 1 cut(s) 24
BstAPI GCANNNNNTGC 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 256
BstDEI CTNAG 2 cut(s) 117, 262
BstF5I GGATG 1 cut(s) 50
BstFNI CGCG 1 cut(s) 217
BstHHI GCGC 1 cut(s) 219
BstMWI GCNNNNNNNGC 4 cut(s) 41, 113, 181, 203
BstNSI RCATGY 2 cut(s) 35, 111
BstUI CGCG 1 cut(s) 217
BstV1I GCAGC 1 cut(s) 190
BtsCI GGATG 1 cut(s) 50
BtsIMutI CAGTG 1 cut(s) 23
Cac8I GCNNGC 1 cut(s) 256
CfoI GCGC 1 cut(s) 219
CviAII CATG 3 cut(s) 32, 38, 108
CviJI RGCY 5 cut(s) 11, 116, 121, 184, 203
CviKI_1 RGCY 5 cut(s) 11, 116, 121, 184, 203
DdeI CTNAG 2 cut(s) 117, 262
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
FaeI CATG 3 cut(s) 35, 41, 111
FaiI YATR 4 cut(s) 33, 39, 109, 164
FatI CATG 3 cut(s) 31, 37, 107
FauI CCCGC 1 cut(s) 263
Fnu4HI GCNGC 2 cut(s) 12, 204
FokI GGATG 1 cut(s) 37
Fsp4HI GCNGC 2 cut(s) 12, 204
GlaI GCGC 1 cut(s) 218
GluI GCNGC 2 cut(s) 12, 204
HhaI GCGC 1 cut(s) 219
Hin1II CATG 3 cut(s) 35, 41, 111
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HphI GGTGA 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 1 cut(s) 71
HpyAV CCTTC 3 cut(s) 70, 94, 145
HpyCH4V TGCA 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 113, 181, 203
HpyF3I CTNAG 2 cut(s) 117, 262
Hsp92II CATG 3 cut(s) 35, 41, 111
HspAI GCGC 1 cut(s) 217
LpnPI CCDG 3 cut(s) 11, 84, 110
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 3 cut(s) 53, 79, 267
MboII GAAGA 2 cut(s) 11, 109
MluCI AATT 1 cut(s) 177
MnlI CCTC 3 cut(s) 27, 64, 259
MslI CAYNNNNRTG 1 cut(s) 36
MvnI CGCG 1 cut(s) 217
MwoI GCNNNNNNNGC 4 cut(s) 41, 113, 181, 203
NlaIII CATG 3 cut(s) 35, 41, 111
NspI RCATGY 2 cut(s) 35, 111
PflMI CCANNNNNTGG 1 cut(s) 199
PkrI GCNGC 2 cut(s) 13, 205
PsiI TTATAA 1 cut(s) 164
RseI CAYNNNNRTG 1 cut(s) 36
SatI GCNGC 2 cut(s) 12, 204
SetI ASST 3 cut(s) 105, 123, 186
SfaNI GCATC 3 cut(s) 53, 79, 267
SmiMI CAYNNNNRTG 1 cut(s) 36
Sse9I AATT 1 cut(s) 177
SsiI CCGC 2 cut(s) 12, 256
TaqI TCGA 1 cut(s) 129
TasI AATT 1 cut(s) 177
TauI GCSGC 1 cut(s) 14
TscAI CASTG 1 cut(s) 30
TseI GCWGC 1 cut(s) 203
TspDTI ATGAA 3 cut(s) 110, 152, 211
TspRI CASTG 1 cut(s) 30
Van91I CCANNNNNTGG 1 cut(s) 199
XceI RCATGY 2 cut(s) 35, 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.