Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001338

Physical Location & Seq

Genomic Coordinates Forward (+)

47261887 .. 47264313

Gene Structure 2427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00426550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGAGCCTGAAAAGATGTTCATGTCCTTTGCGTTGCTTGCTTTCCTGGGTTTGTTTGCTCGTCTATACAATGCCTTGGTGATGAAGCCGGAGAAGCTAAGATCAATCCTGAGGAAGCAAGGCATTGTTGGACCGCCTCCTACCTTCTTGCTCGGAAATATCAAGGAGATCAAGAAGGCTCAAAAGTCCCCAACCCAAGACGCTACCACTACTCAACTCCTAGCCTCCCACAACCTTGCTGCTACTCTCTTTCCCTTCTTTGAAGAATGGAGAAACAAATATGGTCAAGTGTTCAACTTCTCCCTTGGCAACACACAAATATTGTATGTGAATGAATCTGAAGCTGTGAGAGAAATAACCACATGCACATCTTTGGACTTGGGGAAGCCTACCTATCAGTTCAAAGAGCGTGGCCCTTTGCTTGGCCAAGGCATTCTAACTTCAAATGGTGCTGTTTGGGCACATCAGAGAAAAGTCCTTGCTCCACAATTATACATGGACAAGGTTAAGGGGATGATAAATCTTATCACAGAATCTGCGATTACATTGCAAGAGTCATGGAAAAGTAGGATTGATGAAGAGGGTGGGGTGGCAGATATCAATATTGATGAGGACATGAGAAGCTTCTCGGGAGATGTTATCTCAAGAGCATGTTTTGGAAGCAACTTTGCCAGTGGGCAAGTGATCTTTCACAAACTAAGAGATCTCCAAGAAGCCATGTCTAGGAAATGCTTGGCCACAGGGATTCCTGGAATGAGGCATCTTCCTACAAAGAACAGAAGAGAAGCATGGAGACTAGAAAAAGAGGTTCACAATTTGATACTCCAAGTTGTGAAGCAGAGAGCGGAAGGTGCATATGAGAATGACCTGTTGCAAATGGTTCTTGAGGGAGCCAAAAACAGTGACCTAAGCCAAGCGGAAACTGATCGGTTCATTGTTGATAACTGCAAGAACATCTACTTGGCTGGTTATGAGACCACTGCAGTCTCTGCCACATGGTTGCTCATGTTGTTGGCTTCAAATCAAGAATGGCAACAACGCGTCCGCGCCGAGGTTCTTCAAGTTTGTGGTGGCCAGATTCCAGATGCTGACATGCTCCGTAAGATGAAACAGGTACTAATATATAGTGCTAACAATGGTAATTCACGAATCGTTGCGTCTGTATCCACCGGTGTCTGTGGTATCAAGGGAGGCCTTCAAGGATATGAAATTTGGGGGCATATTTGTTCCCAAGGGTGTGAACCTATGGGTTATGGTACTGACATTGCACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0010268 GO:0010817 GO:0016128 GO:0016131 GO:0016491 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

424

Amino Acids

47.34

Weight (kDa)

8.31

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	82 - 370	1.8e-38	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001338)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41150 FvH4_3g41150 FvH4_3g41220 FvH4_6g00880
malus_domestica	MD03G1046700.v1.1 MD03G1046800.v1.1 MD03G1046900.v1.1 MD11G1049600.v1.1 MD14G1091100.v1.1
prunus_persica	Prupe.6G038100_v2.0.a1 Prupe.6G038200_v2.0.a1
pyrus_communis	pycom03g03670 pycom03g03680 pycom03g03690 pycom03g03700 pycom11g03990
rosa_chinensis	RchiOBHm_Chr3g0448361 RchiOBHm_Chr5g0073931 RchiOBHm_Chr5g0073981
rosa_laevigata	RLG00000025921 RLG00000036409 RLG00000036426 RLG00000036428 RLG00000036435 RLG00000036436
rosa_multiflora	Rmu_co8324669.1_g000001 Rmu_co8391719.1_g000001 Rmu_co8502647.1_g000001 Rmu_sc0000470.1_g000021 Rmu_sc0012303.1_g000003 Rmu_sc0015167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00007390 Rroxscaffold_1G00007440 Rroxscaffold_6G00426550
rosa_rugosa	Rorug02G0611700 Rorug05G0427600 Rorug05G0427700 Rorug05G0427800 Rorug05G0428200
rosa_samantha	Rh3AG010900 Rh3BG010700 Rh3CG010400 Rh3DG011100 Rh5AG484500 Rh5AG485200 Rh5BG505200 Rh5BG505600 Rh5CG529000 Rh5CG529300 Rh5DG517600 Rh5DG517900
rosa_wichuraiana	Rw3G000850 Rw5G045040 Rw5G045050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	845
AccII	CGCG	2 cut(s)	1041, 1047
AciI	CCGC	4 cut(s)	134, 845, 917, 1045
AcoI	YGGCCR	3 cut(s)	424, 735, 1072
AcsI	RAATTY	1 cut(s)	1209
AcuI	CTGAAG	1 cut(s)	360
AfaI	GTAC	2 cut(s)	1116, 1258
AfiI	CCNNNNNNNGG	3 cut(s)	422, 723, 1051
AflIII	ACRYGT	1 cut(s)	1039
AgeI	ACCGGT	1 cut(s)	1169
AgsI	TTSAA	7 cut(s)	263, 295, 403, 444, 1020, 1061, 1199
AjnI	CCWGG	2 cut(s)	45, 748
AjuI	GAANNNNNNNTTGG	2 cut(s)	944, 976
AluBI	AGCT	3 cut(s)	97, 344, 624
AluI	AGCT	3 cut(s)	97, 344, 624
Alw26I	GTCTC	3 cut(s)	787, 968, 991
AlwNI	CAGNNNCTG	3 cut(s)	536, 989, 1088
Ama87I	CYCGRG	1 cut(s)	628
AoxI	GGCC	5 cut(s)	412, 424, 735, 1072, 1192
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	1209
AsiGI	ACCGGT	1 cut(s)	1169
AspLEI	GCGC	1 cut(s)	1049
AspS9I	GGNCC	2 cut(s)	131, 413
AsuHPI	GGTGA	1 cut(s)	91
AvaI	CYCGRG	1 cut(s)	628
AvaII	GGWCC	1 cut(s)	131
AxyI	CCTNAGG	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	463
BalI	TGGCCA	3 cut(s)	426, 737, 1074
BbvI	GCAGC	1 cut(s)	226
BcgI	CGANNNNNNTGC	2 cut(s)	529, 563
BciT130I	CCWGG	2 cut(s)	47, 750
BciVI	GTATCC	1 cut(s)	1174
BcoDI	GTCTC	3 cut(s)	787, 968, 991
BfaI	CTAG	3 cut(s)	221, 723, 797
BfmI	CTRYAG	1 cut(s)	981
BfuI	GTATCC	1 cut(s)	1174
BglII	AGATCT	1 cut(s)	703
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	2 cut(s)	47, 750
Bme18I	GGWCC	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	628
BmgT120I	GGNCC	2 cut(s)	131, 413
BmiI	GGNNCC	2 cut(s)	6, 892
BmrFI	CCNGG	2 cut(s)	47, 750
BmsI	GCATC	2 cut(s)	769, 1075
Bpu10I	CCTNAGC	1 cut(s)	908
BpuEI	CTTGAG	2 cut(s)	628, 905
BsaI	GGTCTC	1 cut(s)	968
BsaJI	CCNNGG	6 cut(s)	46, 75, 304, 427, 1050, 1231
BsaWI	WCCGGW	1 cut(s)	1169
Bsc4I	CCNNNNNNNGG	3 cut(s)	422, 723, 1051
Bse118I	RCCGGY	1 cut(s)	1169
Bse1I	ACTGG	1 cut(s)	672
Bse21I	CCTNAGG	1 cut(s)	110
Bse3DI	GCAATG	2 cut(s)	545, 1263
BseBI	CCWGG	2 cut(s)	47, 750
BseDI	CCNNGG	6 cut(s)	46, 75, 304, 427, 1050, 1231
BseGI	GGATG	1 cut(s)	519
BseLI	CCNNNNNNNGG	3 cut(s)	422, 723, 1051
BseMI	GCAATG	2 cut(s)	545, 1263
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	1 cut(s)	672
BseSI	GKGCMC	1 cut(s)	463
BseXI	GCAGC	1 cut(s)	226
Bsh1236I	CGCG	2 cut(s)	1041, 1047
BshFI	GGCC	5 cut(s)	414, 426, 737, 1074, 1194
BshTI	ACCGGT	1 cut(s)	1169
BsiHKCI	CYCGRG	1 cut(s)	628
BsiSI	CCGG	2 cut(s)	89, 1170
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	3 cut(s)	422, 723, 1051
BsmAI	GTCTC	3 cut(s)	787, 968, 991
BsmFI	GGGAC	1 cut(s)	172
BsmI	GAATGC	1 cut(s)	432
BsnI	GGCC	5 cut(s)	414, 426, 737, 1074, 1194
Bso31I	GGTCTC	1 cut(s)	968
BsoBI	CYCGRG	1 cut(s)	628
Bsp1286I	GDGCHC	1 cut(s)	463
Bsp143I	GATC	5 cut(s)	101, 168, 684, 703, 925
BspACI	CCGC	4 cut(s)	134, 845, 917, 1045
BspANI	GGCC	5 cut(s)	414, 426, 737, 1074, 1194
BspCNI	CTCAG	1 cut(s)	102
BspFNI	CGCG	2 cut(s)	1041, 1047
BspLI	GGNNCC	2 cut(s)	6, 892
BspMAI	CTGCAG	1 cut(s)	985
BspTNI	GGTCTC	1 cut(s)	968
BsrBI	CCGCTC	1 cut(s)	845
BsrDI	GCAATG	2 cut(s)	545, 1263
BsrFI	RCCGGY	1 cut(s)	1169
BsrI	ACTGG	1 cut(s)	672
BssAI	RCCGGY	1 cut(s)	1169
BssECI	CCNNGG	6 cut(s)	46, 75, 304, 427, 1050, 1231
BssMI	GATC	5 cut(s)	101, 168, 684, 703, 925
BssT1I	CCWWGG	4 cut(s)	75, 304, 427, 1231
Bst2UI	CCWGG	2 cut(s)	47, 750
Bst4CI	ACNGT	1 cut(s)	902
Bst6I	CTCTTC	2 cut(s)	573, 775
BstAPI	GCANNNNNTGC	1 cut(s)	989
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	4 cut(s)	98, 110, 698, 908
BstF5I	GGATG	1 cut(s)	519
BstFNI	CGCG	2 cut(s)	1041, 1047
BstHHI	GCGC	1 cut(s)	1049
BstKTI	GATC	5 cut(s)	104, 171, 687, 706, 928
BstMAI	GTCTC	3 cut(s)	787, 968, 991
BstMBI	GATC	5 cut(s)	101, 168, 684, 703, 925
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 94, 458, 851, 989
BstNI	CCWGG	2 cut(s)	47, 750
BstNSI	RCATGY	3 cut(s)	366, 654, 1096
BstSCI	CCNGG	2 cut(s)	45, 748
BstSFI	CTRYAG	1 cut(s)	981
BstSLI	GKGCMC	1 cut(s)	463
BstUI	CGCG	2 cut(s)	1041, 1047
BstV1I	GCAGC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	703
BstYI	RGATCY	1 cut(s)	703
Bsu36I	CCTNAGG	1 cut(s)	110
BsuI	GTATCC	1 cut(s)	1174
BsuRI	GGCC	5 cut(s)	414, 426, 737, 1074, 1194
BtsCI	GGATG	1 cut(s)	519
BtsI	GCAGTG	1 cut(s)	978
BtsIMutI	CAGTG	4 cut(s)	679, 907, 978, 1270
Cac8I	GCNNGC	1 cut(s)	39
CaiI	CAGNNNCTG	3 cut(s)	536, 989, 1088
CfoI	GCGC	1 cut(s)	1049
Cfr10I	RCCGGY	1 cut(s)	1169
Cfr13I	GGNCC	2 cut(s)	131, 413
CseI	GACGC	3 cut(s)	209, 1030, 1146
Csp6I	GTAC	2 cut(s)	1115, 1257
CspAI	ACCGGT	1 cut(s)	1169
CspCI	CAANNNNNGTGG	2 cut(s)	391, 426
CviQI	GTAC	2 cut(s)	1115, 1257
DdeI	CTNAG	4 cut(s)	98, 110, 698, 908
DpnI	GATC	5 cut(s)	103, 170, 686, 705, 927
DpnII	GATC	5 cut(s)	101, 168, 684, 703, 925
EaeI	YGGCCR	3 cut(s)	424, 735, 1072
Eam1104I	CTCTTC	2 cut(s)	573, 775
EarI	CTCTTC	2 cut(s)	573, 775
Eco130I	CCWWGG	4 cut(s)	75, 304, 427, 1231
Eco147I	AGGCCT	1 cut(s)	1194
Eco31I	GGTCTC	1 cut(s)	968
Eco32I	GATATC	1 cut(s)	598
Eco47I	GGWCC	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	360
Eco81I	CCTNAGG	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	628
EcoRII	CCWGG	2 cut(s)	45, 748
EcoRV	GATATC	1 cut(s)	598
EcoT14I	CCWWGG	4 cut(s)	75, 304, 427, 1231
ErhI	CCWWGG	4 cut(s)	75, 304, 427, 1231
FaqI	GGGAC	1 cut(s)	172
FauNDI	CATATG	1 cut(s)	856
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	1 cut(s)	526
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	3 cut(s)	221, 723, 797
GlaI	GCGC	1 cut(s)	1048
GluI	GCNGC	1 cut(s)	240
HaeIII	GGCC	5 cut(s)	414, 426, 737, 1074, 1194
HapII	CCGG	2 cut(s)	89, 1170
HgaI	GACGC	3 cut(s)	209, 1030, 1146
HhaI	GCGC	1 cut(s)	1049
Hin6I	GCGC	1 cut(s)	1047
HinP1I	GCGC	1 cut(s)	1047
HindIII	AAGCTT	1 cut(s)	622
HinfI	GANTC	6 cut(s)	335, 533, 554, 745, 1078, 1149
HpaII	CCGG	2 cut(s)	89, 1170
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	2 cut(s)	811, 1241
Hpy188I	TCNGA	3 cut(s)	155, 340, 468
Hpy188III	TCNNGA	8 cut(s)	109, 172, 630, 645, 884, 1025, 1082, 1146
Hpy8I	GTNNAC	2 cut(s)	811, 1241
HpyAV	CCTTC	5 cut(s)	154, 169, 265, 842, 1205
HpyCH4III	ACNGT	1 cut(s)	902
HpyCH4V	TGCA	7 cut(s)	366, 550, 854, 874, 948, 983, 1268
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 94, 458, 851, 989
HpyF3I	CTNAG	4 cut(s)	98, 110, 698, 908
HspAI	GCGC	1 cut(s)	1047
Kzo9I	GATC	5 cut(s)	101, 168, 684, 703, 925
LmnI	GCTCC	4 cut(s)	4, 487, 890, 1101
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	2 cut(s)	769, 1075
MaeI	CTAG	3 cut(s)	221, 723, 797
MaeIII	GTNAC	1 cut(s)	902
MalI	GATC	5 cut(s)	103, 170, 686, 705, 927
MbiI	CCGCTC	1 cut(s)	845
MboI	GATC	5 cut(s)	101, 168, 684, 703, 925
MboII	GAAGA	5 cut(s)	275, 590, 755, 792, 1049
MflI	RGATCY	1 cut(s)	703
MhlI	GDGCHC	1 cut(s)	463
MlsI	TGGCCA	3 cut(s)	426, 737, 1074
MluCI	AATT	4 cut(s)	488, 814, 1141, 1209
MluI	ACGCGT	1 cut(s)	1039
MluNI	TGGCCA	3 cut(s)	426, 737, 1074
MlyI	GAGTC	1 cut(s)	563
MmeI	TCCRAC	1 cut(s)	109
Mox20I	TGGCCA	3 cut(s)	426, 737, 1074
MscI	TGGCCA	3 cut(s)	426, 737, 1074
MseI	TTAA	1 cut(s)	507
Msp20I	TGGCCA	3 cut(s)	426, 737, 1074
MspI	CCGG	2 cut(s)	89, 1170
MspR9I	CCNGG	2 cut(s)	47, 750
Mva1269I	GAATGC	1 cut(s)	432
MvaI	CCWGG	2 cut(s)	47, 750
MvnI	CGCG	2 cut(s)	1041, 1047
MwoI	GCNNNNNNNGC	5 cut(s)	38, 94, 458, 851, 989
NdeI	CATATG	1 cut(s)	856
NdeII	GATC	5 cut(s)	101, 168, 684, 703, 925
NlaIV	GGNNCC	2 cut(s)	6, 892
NmeAIII	GCCGAG	1 cut(s)	1075
NmuCI	GTSAC	1 cut(s)	902
NspI	RCATGY	3 cut(s)	366, 654, 1096
PceI	AGGCCT	1 cut(s)	1194
PctI	GAATGC	1 cut(s)	432
PfeI	GAWTC	5 cut(s)	335, 533, 745, 1078, 1149
PfoI	TCCNGGA	1 cut(s)	748
PinAI	ACCGGT	1 cut(s)	1169
PkrI	GCNGC	1 cut(s)	241
PleI	GAGTC	1 cut(s)	562
PpsI	GAGTC	1 cut(s)	562
Psp6I	CCWGG	2 cut(s)	45, 748
PspGI	CCWGG	2 cut(s)	45, 748
PspN4I	GGNNCC	2 cut(s)	6, 892
PspPI	GGNCC	2 cut(s)	131, 413
PstI	CTGCAG	1 cut(s)	985
PstNI	CAGNNNCTG	3 cut(s)	536, 989, 1088
PsuI	RGATCY	1 cut(s)	703
RsaI	GTAC	2 cut(s)	1116, 1258
RsaNI	GTAC	2 cut(s)	1115, 1257
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	5 cut(s)	101, 168, 684, 703, 925
Sau96I	GGNCC	2 cut(s)	131, 413
SchI	GAGTC	1 cut(s)	563
ScrFI	CCNGG	2 cut(s)	47, 750
SduI	GDGCHC	1 cut(s)	463
SfaNI	GCATC	2 cut(s)	769, 1075
SfcI	CTRYAG	1 cut(s)	981
SgrAI	CRCCGGYG	1 cut(s)	1169
SinI	GGWCC	1 cut(s)	131
SmlI	CTYRAG	2 cut(s)	643, 884
SmoI	CTYRAG	2 cut(s)	643, 884
Sse9I	AATT	4 cut(s)	488, 814, 1141, 1209
SseBI	AGGCCT	1 cut(s)	1194
SsiI	CCGC	4 cut(s)	134, 845, 917, 1045
SspI	AATATT	2 cut(s)	321, 604
SspMI	CTAG	3 cut(s)	221, 723, 797
StuI	AGGCCT	1 cut(s)	1194
StyD4I	CCNGG	2 cut(s)	45, 748
StyI	CCWWGG	4 cut(s)	75, 304, 427, 1231
TaaI	ACNGT	1 cut(s)	902
TasI	AATT	4 cut(s)	488, 814, 1141, 1209
TfiI	GAWTC	5 cut(s)	335, 533, 745, 1078, 1149
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	3 cut(s)	679, 907, 985
TseFI	GTSAC	1 cut(s)	902
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	902
TspDTI	ATGAA	7 cut(s)	10, 98, 348, 591, 922, 1121, 1221
TspGWI	ACGGA	1 cut(s)	1088
TspRI	CASTG	3 cut(s)	679, 907, 985
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	1 cut(s)	1209
XceI	RCATGY	3 cut(s)	366, 654, 1096
XspI	CTAG	3 cut(s)	221, 723, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.