Rmu_sc0000470.1_g000021

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000470.1
OG0001338
Physical Location & Seq
Reverse (-)
93947 .. 96855
2909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000470.1_g000021.1.cds

Sequence Viewer

Length: 1560 bp
atggagctcctccacgggttcgatgtgaaaatgttggtgtcgacggtggcgctgatcgggttcgtggggttgctggtgcggttgtataaggggctagtggcggagccgaagaggctgagatccctactggccaagcaaggcatcaccggacctccacaagctttgcttctcgggaatatctcggagataaagagggctcatggccgcggtggcaatgctaaggctccgagcagcgaaccacccacctcacacaacctggctgctactatcttccccttctttgataagtggaggaagcaatttggtgacgtgtttgtgtttggtcttggcaccacgcaaatcctatatgtgatcaaacgagaagcagtgagggagatcacaacctgcacatccttggacttggggaaacccacataccaattcaaacagcgtggtcctttacttggtaaaggtattttgacctccaatggagcctcgtgggctcatcagcgcaaggtcatggctcctgaactttacatggagaaggtcaagggaatgatcaacttaattaccgaatcctcgaatactctggtgaacttgtggaacggtaaaattgatgctggcaaaggagttgcagacataaaaattgacaacgatttgagaagcttctctggtgatgttatctcgagggcatgttttgggagcagttataccaaaggggtacagatttttgataaactaaggcaactccaggaggccatgggcaggaaagtctttgggggtgcagttcctggaatgagacaccttcctacaaagagcaatagggaagaatgggcattagaaaaggaggttgcgaggttgatactgcaattagtgaaggagagacaggcagctgggcacgaaaaagacttgttgcaaatgattcttgagggtgcaagagccagtgatctcagtcaagatgcagcagacagcttcattgttgataattgcaagaacatatacttagctggatatgaaaccacagctacttctgccacatggtgcctcatgctgttggcttcgaatcaagaatggcgagaacgcattagagcagaggtccttcaagtttgccaaggccgcgtcccagatgctgatatgcttcgcaagatgaaacagctaacaatggtgattcatgaatcattaaggctctacccacccgttaccattatgtcaagggaggcattcaaggacatgaactttggagacattcatgttccaaagagtgtcaatgtttggaccagtgtggcgacaatacacactgatccagaaatatggggacatgatgtctacaatttcaagccggaaagatttgcaaatgggatcactggagcttgcaagcttccctacttgtacatgccattcgggcttggacctcgagtgtgtcttggacagaacttggccatgatcgaactcaaggttgtcatagctctcattgtcaccaatttctcattctcactttcgcccaattacagtcacagacctgctcaaagattggttgtagagccagaatccggcatcgatcttttgatgaggaagctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

519

Amino Acids

57.83

Weight (kDa)

9.38

Isoelectric Point (pI)

37.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 392, 1507
AccB1I GGYRCC 2 cut(s) 329, 1020
AccI GTMKAC 2 cut(s) 41, 1305
AccII CGCG 2 cut(s) 207, 1098
AciI CCGC 5 cut(s) 79, 101, 205, 207, 1096
AclWI GGATC 3 cut(s) 114, 1274, 1346
AcoI YGGCCR 3 cut(s) 129, 202, 1416
AdeI CACNNNGTG 1 cut(s) 1020
AfaI GTAC 2 cut(s) 702, 1370
AfiI CCNNNNNNNGG 3 cut(s) 443, 744, 1529
AflIII ACRYGT 1 cut(s) 309
AgsI TTSAA 4 cut(s) 424, 1082, 1204, 1315
AhdI GACNNNNNGTC 1 cut(s) 1301
AjiI CACGTC 1 cut(s) 310
AjnI CCWGG 3 cut(s) 255, 729, 769
AjuI GAANNNNNNNTTGG 2 cut(s) 1451, 1483
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 3 cut(s) 772, 856, 1215
AlwI GGATC 3 cut(s) 114, 1274, 1346
AlwNI CAGNNNCTG 2 cut(s) 770, 1109
Ama87I CYCGRG 3 cut(s) 170, 664, 1392
AoxI GGCC 5 cut(s) 129, 202, 735, 1093, 1416
ApeKI GCWGC 4 cut(s) 231, 260, 869, 941
ArsI GACNNNNNNTTYG 2 cut(s) 1199, 1231
AspLEI GCGC 2 cut(s) 52, 492
AspS9I GGNCC 5 cut(s) 149, 434, 1075, 1254, 1388
AsuHPI GGTGA 6 cut(s) 136, 317, 583, 665, 1156, 1447
AsuII TTCGAA 1 cut(s) 1040
AvaI CYCGRG 3 cut(s) 170, 664, 1392
AvaII GGWCC 5 cut(s) 149, 434, 1075, 1254, 1388
BaeGI GKGCMC 1 cut(s) 879
BalI TGGCCA 2 cut(s) 131, 1418
BanI GGYRCC 2 cut(s) 329, 1020
BanII GRGCYC 3 cut(s) 9, 199, 484
BauI CACGAG 1 cut(s) 475
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 4 cut(s) 243, 247, 881, 953
BciT130I CCWGG 3 cut(s) 257, 731, 771
BclI TGATCA 2 cut(s) 351, 537
BcoDI GTCTC 3 cut(s) 772, 856, 1215
BfaI CTAG 1 cut(s) 95
BfoI RGCGCY 1 cut(s) 53
BfuAI ACCTGC 2 cut(s) 392, 1507
BglI GCCNNNNNGGC 4 cut(s) 112, 210, 479, 1381
BisI GCNGC 6 cut(s) 205, 232, 261, 870, 942, 1096
BlsI GCNGC 6 cut(s) 206, 233, 262, 871, 943, 1097
Bme1390I CCNGG 3 cut(s) 257, 731, 771
Bme18I GGWCC 5 cut(s) 149, 434, 1075, 1254, 1388
BmeRI GACNNNNNGTC 1 cut(s) 1301
BmeT110I CYCGRG 3 cut(s) 170, 664, 1392
BmgBI CACGTC 1 cut(s) 310
BmgT120I GGNCC 5 cut(s) 149, 434, 1075, 1254, 1388
BmiI GGNNCC 6 cut(s) 105, 225, 331, 472, 504, 1022
BmrFI CCNGG 3 cut(s) 257, 731, 771
BmsI GCATC 5 cut(s) 150, 586, 928, 1096, 1542
BpmI CTGGAG 2 cut(s) 713, 1365
Bpu10I CCTNAGC 1 cut(s) 219
Bpu14I TTCGAA 1 cut(s) 1040
BpuEI CTTGAG 2 cut(s) 926, 1415
Bsa29I ATCGAT 1 cut(s) 1536
BsaJI CCNNGG 5 cut(s) 13, 205, 393, 738, 1090
BsaWI WCCGGW 1 cut(s) 146
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bsc4I CCNNNNNNNGG 3 cut(s) 443, 744, 1529
Bse1I ACTGG 4 cut(s) 132, 921, 1257, 1348
Bse3DI GCAATG 1 cut(s) 220
BseBI CCWGG 3 cut(s) 257, 731, 771
BseCI ATCGAT 1 cut(s) 1536
BseDI CCNNGG 5 cut(s) 13, 205, 393, 738, 1090
BseGI GGATG 1 cut(s) 389
BseLI CCNNNNNNNGG 3 cut(s) 443, 744, 1529
BseMI GCAATG 1 cut(s) 220
BseMII CTCAG 2 cut(s) 107, 943
BseNI ACTGG 4 cut(s) 132, 921, 1257, 1348
BseSI GKGCMC 1 cut(s) 879
BseXI GCAGC 4 cut(s) 243, 247, 881, 953
BseYI CCCAGC 1 cut(s) 872
BsgI GTGCAG 2 cut(s) 370, 783
Bsh1236I CGCG 2 cut(s) 207, 1098
BshFI GGCC 5 cut(s) 131, 204, 737, 1095, 1418
BshNI GGYRCC 2 cut(s) 329, 1020
BshVI ATCGAT 1 cut(s) 1536
BsiHKAI GWGCWC 1 cut(s) 9
BsiHKCI CYCGRG 3 cut(s) 170, 664, 1392
BsiSI CCGG 3 cut(s) 147, 1319, 1530
BslFI GGGAC 2 cut(s) 1085, 1308
BslI CCNNNNNNNGG 3 cut(s) 443, 744, 1529
BsmAI GTCTC 3 cut(s) 772, 856, 1215
BsmFI GGGAC 2 cut(s) 1085, 1308
BsmI GAATGC 1 cut(s) 1199
BsnI GGCC 5 cut(s) 131, 204, 737, 1095, 1418
BsoBI CYCGRG 3 cut(s) 170, 664, 1392
Bsp119I TTCGAA 1 cut(s) 1040
Bsp1286I GDGCHC 4 cut(s) 9, 199, 484, 879
Bsp1407I TGTACA 1 cut(s) 1368
Bsp19I CCATGG 1 cut(s) 738
BspACI CCGC 5 cut(s) 79, 101, 205, 207, 1096
BspANI GGCC 5 cut(s) 131, 204, 737, 1095, 1418
BspCNI CTCAG 2 cut(s) 108, 942
BspDI ATCGAT 1 cut(s) 1536
BspFNI CGCG 2 cut(s) 207, 1098
BspHI TCATGA 1 cut(s) 1150
BspLI GGNNCC 6 cut(s) 105, 225, 331, 472, 504, 1022
BspMI ACCTGC 2 cut(s) 392, 1507
BspPI GGATC 3 cut(s) 114, 1274, 1346
BspT104I TTCGAA 1 cut(s) 1040
BspT107I GGYRCC 2 cut(s) 329, 1020
BsrDI GCAATG 1 cut(s) 220
BsrGI TGTACA 1 cut(s) 1368
BsrI ACTGG 4 cut(s) 132, 921, 1257, 1348
BssECI CCNNGG 5 cut(s) 13, 205, 393, 738, 1090
BssSI CACGAG 1 cut(s) 475
BssT1I CCWWGG 3 cut(s) 393, 738, 1090
Bst2BI CACGAG 1 cut(s) 475
Bst2UI CCWGG 3 cut(s) 257, 731, 771
Bst4CI ACNGT 3 cut(s) 46, 587, 1490
Bst6I CTCTTC 1 cut(s) 104
BstAUI TGTACA 1 cut(s) 1368
BstBI TTCGAA 1 cut(s) 1040
BstC8I GCNNGC 3 cut(s) 601, 1351, 1355
BstDEI CTNAG 5 cut(s) 116, 219, 719, 929, 982
BstDSI CCRYGG 3 cut(s) 13, 205, 738
BstF5I GGATG 1 cut(s) 389
BstFNI CGCG 2 cut(s) 207, 1098
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 2 cut(s) 52, 492
BstMAI GTCTC 3 cut(s) 772, 856, 1215
BstMWI GCNNNNNNNGC 6 cut(s) 112, 210, 479, 1010, 1095, 1381
BstNI CCWGG 3 cut(s) 257, 731, 771
BstNSI RCATGY 2 cut(s) 675, 1375
BstSCI CCNGG 3 cut(s) 255, 729, 769
BstSLI GKGCMC 1 cut(s) 879
BstUI CGCG 2 cut(s) 207, 1098
BstV1I GCAGC 4 cut(s) 243, 247, 881, 953
BstX2I RGATCY 1 cut(s) 119
BstXI CCANNNNNNTGG 1 cut(s) 1290
BstYI RGATCY 1 cut(s) 119
Bsu15I ATCGAT 1 cut(s) 1536
BsuRI GGCC 5 cut(s) 131, 204, 737, 1095, 1418
BsuTUI ATCGAT 1 cut(s) 1536
BtgI CCRYGG 3 cut(s) 13, 205, 738
BtrI CACGTC 1 cut(s) 310
BtsCI GGATG 1 cut(s) 389
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 5 cut(s) 372, 928, 1264, 1275, 1341
BveI ACCTGC 2 cut(s) 392, 1507
Cac8I GCNNGC 3 cut(s) 601, 1351, 1355
CaiI CAGNNNCTG 2 cut(s) 770, 1109
CciI TCATGA 1 cut(s) 1150
CfoI GCGC 2 cut(s) 52, 492
Cfr13I GGNCC 5 cut(s) 149, 434, 1075, 1254, 1388
Cfr42I CCGCGG 1 cut(s) 208
ClaI ATCGAT 1 cut(s) 1536
CseI GACGC 1 cut(s) 1087
Csp6I GTAC 2 cut(s) 701, 1369
CspCI CAANNNNNGTGG 4 cut(s) 144, 179, 412, 447
CviQI GTAC 2 cut(s) 701, 1369
DdeI CTNAG 5 cut(s) 116, 219, 719, 929, 982
DraIII CACNNNGTG 1 cut(s) 1020
DriI GACNNNNNGTC 1 cut(s) 1301
EaeI YGGCCR 3 cut(s) 129, 202, 1416
Eam1104I CTCTTC 1 cut(s) 104
Eam1105I GACNNNNNGTC 1 cut(s) 1301
EarI CTCTTC 1 cut(s) 104
EciI GGCGGA 1 cut(s) 116
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 3 cut(s) 393, 738, 1090
Eco24I GRGCYC 3 cut(s) 9, 199, 484
Eco47I GGWCC 5 cut(s) 149, 434, 1075, 1254, 1388
Eco53kI GAGCTC 1 cut(s) 7
Eco88I CYCGRG 3 cut(s) 170, 664, 1392
EcoICRI GAGCTC 1 cut(s) 7
EcoO109I RGGNCCY 1 cut(s) 1075
EcoRII CCWGG 3 cut(s) 255, 729, 769
EcoT14I CCWWGG 3 cut(s) 393, 738, 1090
EcoT38I GRGCYC 3 cut(s) 9, 199, 484
ErhI CCWWGG 3 cut(s) 393, 738, 1090
FalI AAGNNNNNCTT 2 cut(s) 150, 182
FaqI GGGAC 2 cut(s) 1085, 1308
FbaI TGATCA 2 cut(s) 351, 537
FblI GTMKAC 2 cut(s) 41, 1305
Fnu4HI GCNGC 6 cut(s) 205, 232, 261, 870, 942, 1096
FokI GGATG 1 cut(s) 376
FriOI GRGCYC 3 cut(s) 9, 199, 484
Fsp4HI GCNGC 6 cut(s) 205, 232, 261, 870, 942, 1096
FspBI CTAG 1 cut(s) 95
GlaI GCGC 2 cut(s) 51, 491
GluI GCNGC 6 cut(s) 205, 232, 261, 870, 942, 1096
GsaI CCCAGC 1 cut(s) 876
GsuI CTGGAG 2 cut(s) 713, 1365
HaeII RGCGCY 1 cut(s) 53
HaeIII GGCC 5 cut(s) 131, 204, 737, 1095, 1418
HapII CCGG 3 cut(s) 147, 1319, 1530
HgaI GACGC 1 cut(s) 1087
HhaI GCGC 2 cut(s) 52, 492
Hin6I GCGC 2 cut(s) 50, 490
HinP1I GCGC 2 cut(s) 50, 490
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HindIII AAGCTT 4 cut(s) 159, 643, 1355, 1553
HinfI GANTC 6 cut(s) 554, 901, 1042, 1147, 1154, 1526
HpaII CCGG 3 cut(s) 147, 1319, 1530
HphI GGTGA 6 cut(s) 136, 317, 583, 665, 1156, 1447
Hpy166II GTNNAC 3 cut(s) 42, 574, 1306
Hpy188I TCNGA 2 cut(s) 184, 228
Hpy188III TCNNGA 8 cut(s) 172, 506, 664, 905, 935, 1046, 1151, 1283
Hpy8I GTNNAC 3 cut(s) 42, 574, 1306
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 5 cut(s) 286, 517, 794, 850, 1088
HpyCH4III ACNGT 3 cut(s) 46, 587, 1490
HpyCH4IV ACGT 1 cut(s) 309
HpyF10VI GCNNNNNNNGC 6 cut(s) 112, 210, 479, 1010, 1095, 1381
HpyF3I CTNAG 5 cut(s) 116, 219, 719, 929, 982
HpySE526I ACGT 1 cut(s) 309
HspAI GCGC 2 cut(s) 50, 490
Ksp22I TGATCA 2 cut(s) 351, 537
KspI CCGCGG 1 cut(s) 208
LmnI GCTCC 8 cut(s) 4, 12, 103, 229, 470, 508, 681, 1346
Lsp1109I GCAGC 4 cut(s) 243, 247, 881, 953
LweI GCATC 5 cut(s) 150, 586, 928, 1096, 1542
MaeI CTAG 1 cut(s) 95
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 4 cut(s) 305, 1177, 1453, 1490
MboII GAAGA 3 cut(s) 121, 262, 818
MflI RGATCY 1 cut(s) 119
MhlI GDGCHC 4 cut(s) 9, 199, 484, 879
MlsI TGGCCA 2 cut(s) 131, 1418
MluNI TGGCCA 2 cut(s) 131, 1418
Mox20I TGGCCA 2 cut(s) 131, 1418
MscI TGGCCA 2 cut(s) 131, 1418
MseI TTAA 2 cut(s) 545, 1160
Msp20I TGGCCA 2 cut(s) 131, 1418
MspA1I CMGCKG 2 cut(s) 207, 872
MspI CCGG 3 cut(s) 147, 1319, 1530
MspR9I CCNGG 3 cut(s) 257, 731, 771
Mva1269I GAATGC 1 cut(s) 1199
MvaI CCWGG 3 cut(s) 257, 731, 771
MvnI CGCG 2 cut(s) 207, 1098
MwoI GCNNNNNNNGC 6 cut(s) 112, 210, 479, 1010, 1095, 1381
NcoI CCATGG 1 cut(s) 738
NlaIV GGNNCC 6 cut(s) 105, 225, 331, 472, 504, 1022
NmuCI GTSAC 3 cut(s) 305, 1453, 1490
NspI RCATGY 2 cut(s) 675, 1375
NspV TTCGAA 1 cut(s) 1040
PaeR7I CTCGAG 2 cut(s) 664, 1392
PagI TCATGA 1 cut(s) 1150
PctI GAATGC 1 cut(s) 1199
PfeI GAWTC 6 cut(s) 554, 901, 1042, 1147, 1154, 1526
PfoI TCCNGGA 2 cut(s) 729, 769
PkrI GCNGC 6 cut(s) 206, 233, 262, 871, 943, 1097
PpuMI RGGWCCY 1 cut(s) 1075
Psp124BI GAGCTC 1 cut(s) 9
Psp5II RGGWCCY 1 cut(s) 1075
Psp6I CCWGG 3 cut(s) 255, 729, 769
PspFI CCCAGC 1 cut(s) 872
PspGI CCWGG 3 cut(s) 255, 729, 769
PspN4I GGNNCC 6 cut(s) 105, 225, 331, 472, 504, 1022
PspPI GGNCC 5 cut(s) 149, 434, 1075, 1254, 1388
PspPPI RGGWCCY 1 cut(s) 1075
PspXI VCTCGAGB 1 cut(s) 1392
PstNI CAGNNNCTG 2 cut(s) 770, 1109
PsuI RGATCY 1 cut(s) 119
PvuII CAGCTG 1 cut(s) 872
RsaI GTAC 2 cut(s) 702, 1370
RsaNI GTAC 2 cut(s) 701, 1369
SacI GAGCTC 1 cut(s) 9
SacII CCGCGG 1 cut(s) 208
SalI GTCGAC 1 cut(s) 40
SaqAI TTAA 2 cut(s) 545, 1160
SatI GCNGC 6 cut(s) 205, 232, 261, 870, 942, 1096
Sau96I GGNCC 5 cut(s) 149, 434, 1075, 1254, 1388
ScrFI CCNGG 3 cut(s) 257, 731, 771
SduI GDGCHC 4 cut(s) 9, 199, 484, 879
SfaNI GCATC 5 cut(s) 150, 586, 928, 1096, 1542
Sfr274I CTCGAG 2 cut(s) 664, 1392
Sfr303I CCGCGG 1 cut(s) 208
SfuI TTCGAA 1 cut(s) 1040
SgrBI CCGCGG 1 cut(s) 208
SinI GGWCC 5 cut(s) 149, 434, 1075, 1254, 1388
SlaI CTCGAG 2 cut(s) 664, 1392
SmlI CTYRAG 4 cut(s) 664, 905, 1392, 1430
SmoI CTYRAG 4 cut(s) 664, 905, 1392, 1430
SsiI CCGC 5 cut(s) 79, 101, 205, 207, 1096
SspMI CTAG 1 cut(s) 95
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 3 cut(s) 255, 729, 769
StyI CCWWGG 3 cut(s) 393, 738, 1090
TaaI ACNGT 3 cut(s) 46, 587, 1490
TaiI ACGT 1 cut(s) 312
TaqI TCGA 8 cut(s) 21, 41, 560, 665, 1040, 1393, 1425, 1536
TatI WGTACW 1 cut(s) 1368
TauI GCSGC 2 cut(s) 207, 1098
TfiI GAWTC 6 cut(s) 554, 901, 1042, 1147, 1154, 1526
Tru1I TTAA 2 cut(s) 545, 1160
Tru9I TTAA 2 cut(s) 545, 1160
TscAI CASTG 5 cut(s) 372, 928, 1264, 1282, 1348
TseFI GTSAC 3 cut(s) 305, 1453, 1490
TseI GCWGC 4 cut(s) 231, 260, 869, 941
Tsp45I GTSAC 3 cut(s) 305, 1453, 1490
TspDTI ATGAA 7 cut(s) 943, 1008, 1139, 1142, 1167, 1217, 1226
TspRI CASTG 5 cut(s) 372, 928, 1264, 1282, 1348
VpaK11BI GGWCC 5 cut(s) 149, 434, 1075, 1254, 1388
XceI RCATGY 2 cut(s) 675, 1375
XhoI CTCGAG 2 cut(s) 664, 1392
XmiI GTMKAC 2 cut(s) 41, 1305
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.