Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001338

Physical Location & Seq

Genomic Coordinates Reverse (-)

13024608 .. 13026432

Gene Structure 1825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1091100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCTGTTGGCTTCAAACCAAGAATGGCAAGAACATGTGAGAGCAGAGGCCCTTCAAGTTTGCCAGGGCCACATTCCAGATGCCAAAATGGTTCGCAACATGAAACAGCTAACAATGGTGATTCATGAATCATTGCGCCTATATCCCCCGGTTAGTGTGGTGTCAAGGGAGGATTTCAAGGACATGAAGTTCGGGGACATTCAGGTTCCAAAGGTTATCAATGTTTGGATAATGGTGATAACATTGCACACTGATCCGGAATTATGGGGACCAGATTCGTATGCATTCAACCCCAACAGGTTTGCGAATGGGATCACAGGCGCTTGCAAGCTTCCACACCTGTACATGCCATTCGGAGTTGGTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

123

Amino Acids

13.9

Weight (kDa)

6.49

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 122	1.4e-28	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001338)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41150 FvH4_3g41150 FvH4_3g41220 FvH4_6g00880
malus_domestica	MD03G1046700.v1.1 MD03G1046800.v1.1 MD03G1046900.v1.1 MD11G1049600.v1.1 MD14G1091100.v1.1
prunus_persica	Prupe.6G038100_v2.0.a1 Prupe.6G038200_v2.0.a1
pyrus_communis	pycom03g03670 pycom03g03680 pycom03g03690 pycom03g03700 pycom11g03990
rosa_chinensis	RchiOBHm_Chr3g0448361 RchiOBHm_Chr5g0073931 RchiOBHm_Chr5g0073981
rosa_laevigata	RLG00000025921 RLG00000036409 RLG00000036426 RLG00000036428 RLG00000036435 RLG00000036436
rosa_multiflora	Rmu_co8324669.1_g000001 Rmu_co8391719.1_g000001 Rmu_co8502647.1_g000001 Rmu_sc0000470.1_g000021 Rmu_sc0012303.1_g000003 Rmu_sc0015167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00007390 Rroxscaffold_1G00007440 Rroxscaffold_6G00426550
rosa_rugosa	Rorug02G0611700 Rorug05G0427600 Rorug05G0427700 Rorug05G0427800 Rorug05G0428200
rosa_samantha	Rh3AG010900 Rh3BG010700 Rh3CG010400 Rh3DG011100 Rh5AG484500 Rh5AG485200 Rh5BG505200 Rh5BG505600 Rh5CG529000 Rh5CG529300 Rh5DG517600 Rh5DG517900
rosa_wichuraiana	Rw3G000850 Rw5G045040 Rw5G045050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	256
AclWI	GGATC	2 cut(s)	248, 320
AfaI	GTAC	1 cut(s)	344
AflIII	ACRYGT	1 cut(s)	34
AgsI	TTSAA	4 cut(s)	15, 56, 178, 289
AjnI	CCWGG	1 cut(s)	63
AloI	GAACNNNNNNTCC	2 cut(s)	173, 205
AluBI	AGCT	2 cut(s)	109, 331
AluI	AGCT	2 cut(s)	109, 331
AlwI	GGATC	2 cut(s)	248, 320
Aor13HI	TCCGGA	1 cut(s)	256
AoxI	GGCC	2 cut(s)	48, 67
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AspLEI	GCGC	2 cut(s)	138, 323
AspS9I	GGNCC	4 cut(s)	49, 67, 269, 362
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	2 cut(s)	130, 247
AvaII	GGWCC	2 cut(s)	269, 362
BciT130I	CCWGG	1 cut(s)	65
BcnI	CCSGG	1 cut(s)	149
BfoI	RGCGCY	1 cut(s)	324
Bme1390I	CCNGG	2 cut(s)	65, 149
Bme18I	GGWCC	2 cut(s)	269, 362
BmgT120I	GGNCC	4 cut(s)	49, 67, 269, 362
BmiI	GGNNCC	2 cut(s)	207, 270
BmrFI	CCNGG	2 cut(s)	65, 149
BmsI	GCATC	1 cut(s)	70
BpuMI	CCSGG	1 cut(s)	149
BsaJI	CCNNGG	2 cut(s)	64, 147
BsaWI	WCCGGW	1 cut(s)	256
Bse3DI	GCAATG	2 cut(s)	131, 242
BseAI	TCCGGA	1 cut(s)	256
BseBI	CCWGG	1 cut(s)	65
BseDI	CCNNGG	2 cut(s)	64, 147
BseMI	GCAATG	2 cut(s)	131, 242
BshFI	GGCC	2 cut(s)	50, 69
BsiSI	CCGG	2 cut(s)	149, 257
BslFI	GGGAC	2 cut(s)	209, 282
BsmFI	GGGAC	2 cut(s)	209, 282
BsmI	GAATGC	1 cut(s)	284
BsnI	GGCC	2 cut(s)	50, 69
Bsp13I	TCCGGA	1 cut(s)	256
Bsp1407I	TGTACA	1 cut(s)	342
Bsp143I	GATC	2 cut(s)	253, 312
BspANI	GGCC	2 cut(s)	50, 69
BspEI	TCCGGA	1 cut(s)	256
BspHI	TCATGA	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	207, 270
BspPI	GGATC	2 cut(s)	248, 320
BsrDI	GCAATG	2 cut(s)	131, 242
BsrGI	TGTACA	1 cut(s)	342
BssECI	CCNNGG	2 cut(s)	64, 147
BssMI	GATC	2 cut(s)	253, 312
Bst2UI	CCWGG	1 cut(s)	65
BstAUI	TGTACA	1 cut(s)	342
BstC8I	GCNNGC	2 cut(s)	325, 329
BstH2I	RGCGCY	1 cut(s)	324
BstHHI	GCGC	2 cut(s)	138, 323
BstKTI	GATC	2 cut(s)	256, 315
BstMBI	GATC	2 cut(s)	253, 312
BstNI	CCWGG	1 cut(s)	65
BstNSI	RCATGY	2 cut(s)	38, 349
BstSCI	CCNGG	2 cut(s)	63, 147
BsuRI	GGCC	2 cut(s)	50, 69
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	2 cut(s)	325, 329
CciI	TCATGA	1 cut(s)	124
CfoI	GCGC	2 cut(s)	138, 323
Cfr13I	GGNCC	4 cut(s)	49, 67, 269, 362
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	5 cut(s)	35, 100, 125, 184, 346
CviJI	RGCY	5 cut(s)	11, 50, 69, 109, 331
CviKI_1	RGCY	5 cut(s)	11, 50, 69, 109, 331
CviQI	GTAC	1 cut(s)	343
DpnI	GATC	2 cut(s)	255, 314
DpnII	GATC	2 cut(s)	253, 312
Eco47I	GGWCC	2 cut(s)	269, 362
EcoO109I	RGGNCCY	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	63
EcoT22I	ATGCAT	1 cut(s)	286
FaeI	CATG	5 cut(s)	38, 103, 128, 187, 349
FaiI	YATR	8 cut(s)	36, 101, 126, 142, 185, 265, 282, 347
FaqI	GGGAC	2 cut(s)	209, 282
FatI	CATG	5 cut(s)	34, 99, 124, 183, 345
GlaI	GCGC	2 cut(s)	137, 322
HaeII	RGCGCY	1 cut(s)	324
HaeIII	GGCC	2 cut(s)	50, 69
HapII	CCGG	2 cut(s)	149, 257
HhaI	GCGC	2 cut(s)	138, 323
Hin1II	CATG	5 cut(s)	38, 103, 128, 187, 349
Hin6I	GCGC	2 cut(s)	136, 321
HinP1I	GCGC	2 cut(s)	136, 321
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	3 cut(s)	121, 128, 275
HpaII	CCGG	2 cut(s)	149, 257
HphI	GGTGA	2 cut(s)	130, 247
Hpy188I	TCNGA	1 cut(s)	356
Hpy188III	TCNNGA	3 cut(s)	77, 125, 257
HpyAV	CCTTC	1 cut(s)	62
HpyCH4V	TGCA	3 cut(s)	247, 284, 327
Hsp92II	CATG	5 cut(s)	38, 103, 128, 187, 349
HspAI	GCGC	2 cut(s)	136, 321
Kpn2I	TCCGGA	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	253, 312
LweI	GCATC	1 cut(s)	70
MalI	GATC	2 cut(s)	255, 314
MboI	GATC	2 cut(s)	253, 312
MluCI	AATT	1 cut(s)	260
MnlI	CCTC	2 cut(s)	40, 163
Mph1103I	ATGCAT	1 cut(s)	286
MroI	TCCGGA	1 cut(s)	256
MspI	CCGG	2 cut(s)	149, 257
MspR9I	CCNGG	2 cut(s)	65, 149
Mva1269I	GAATGC	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	65
NciI	CCSGG	1 cut(s)	149
NdeII	GATC	2 cut(s)	253, 312
NlaIII	CATG	5 cut(s)	38, 103, 128, 187, 349
NlaIV	GGNNCC	2 cut(s)	207, 270
NsiI	ATGCAT	1 cut(s)	286
NspI	RCATGY	2 cut(s)	38, 349
PagI	TCATGA	1 cut(s)	124
PciI	ACATGT	1 cut(s)	34
PctI	GAATGC	1 cut(s)	284
PfeI	GAWTC	3 cut(s)	121, 128, 275
PscI	ACATGT	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	2 cut(s)	207, 270
PspPI	GGNCC	4 cut(s)	49, 67, 269, 362
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
Sau3AI	GATC	2 cut(s)	253, 312
Sau96I	GGNCC	4 cut(s)	49, 67, 269, 362
ScrFI	CCNGG	2 cut(s)	65, 149
SetI	ASST	6 cut(s)	111, 207, 216, 302, 333, 342
SfaNI	GCATC	1 cut(s)	70
SinI	GGWCC	2 cut(s)	269, 362
Sse9I	AATT	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	63, 147
TasI	AATT	1 cut(s)	260
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	3 cut(s)	121, 128, 275
TscAI	CASTG	1 cut(s)	256
TspDTI	ATGAA	4 cut(s)	113, 116, 141, 200
TspRI	CASTG	1 cut(s)	256
VpaK11BI	GGWCC	2 cut(s)	269, 362
XceI	RCATGY	2 cut(s)	38, 349
Zsp2I	ATGCAT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.