FvH4_6g03550
ERF Family

Gamma-interferon-inducible lysosomal thiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003951
Physical Location & Seq
Forward (+)
1951934 .. 1953753
1820 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03550.t1

Sequence Viewer

Length: 528 bp
ATGCATAGATTGAAACAAAATATGCAAAGGAAACTGCTCAGCTTAATCCACCACATAGATTTGTGCCATGGTTGGTTGTCAATAATAAACCACTTGCAGATACTGGTTCCTTGGGGTGATGTATACGCCAACAAATCGAACAACAGCACTGCTTTCTGTCAGCATAGGCCAGATCAATGCAAGTTGAATTCTCTGCAATCATGCGCTATCGATGTTATGCATGATGTGAACAAGCACTTTGCTTTGATTTACTACATAGAATTTCTGGCCATAGAGGGAAGGCAAAAGGAGTGGGAAACTTGCTTCAGATCATTGGGACTGCCTAAGAAACACATTTTGGATTGCTACAATTGTTCAAATGCAACAAAGCTTGAACAAAACTATGGCAATGAAATTATGCACCTCAATCCACCTCTAGAGTTTGTACCATGGCTGGTTTTGAATAATCAACCTACTGGAAATGACTATGAAAATTTTGCCGGCTATGTGTGCAAGGCTTACAAATGTAAAATTGTGTCCATGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 map04612
Pfam Domains
Protein Families
GILT

Protein Analysis

176

Amino Acids

20.39

Weight (kDa)

8.06

Isoelectric Point (pI)

50.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 35 - 103 7.2e-12 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 123
AcoI YGGCCR 1 cut(s) 267
AcsI RAATTY 3 cut(s) 187, 260, 472
AcuI CTGAAG 1 cut(s) 289
AfaI GTAC 1 cut(s) 426
AgsI TTSAA 5 cut(s) 13, 187, 357, 374, 442
AjuI GAANNNNNNNTTGG 2 cut(s) 320, 352
AluBI AGCT 2 cut(s) 42, 370
AluI AGCT 2 cut(s) 42, 370
AlwNI CAGNNNCTG 1 cut(s) 103
AoxI GGCC 2 cut(s) 167, 267
ApoI RAATTY 3 cut(s) 187, 260, 472
AspLEI GCGC 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 128
BalI TGGCCA 1 cut(s) 269
BfaI CTAG 1 cut(s) 416
BlpI GCTNAGC 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 108
Bpu1102I GCTNAGC 1 cut(s) 38
Bsa29I ATCGAT 1 cut(s) 210
BsaJI CCNNGG 3 cut(s) 67, 110, 428
Bse118I RCCGGY 1 cut(s) 479
Bse1I ACTGG 2 cut(s) 108, 460
Bse3DI GCAATG 1 cut(s) 394
BseCI ATCGAT 1 cut(s) 210
BseDI CCNNGG 3 cut(s) 67, 110, 428
BseMI GCAATG 1 cut(s) 394
BseMII CTCAG 1 cut(s) 52
BseNI ACTGG 2 cut(s) 108, 460
BshFI GGCC 2 cut(s) 169, 269
BshVI ATCGAT 1 cut(s) 210
BsiSI CCGG 1 cut(s) 480
BslFI GGGAC 1 cut(s) 330
BsmFI GGGAC 1 cut(s) 330
BsnI GGCC 2 cut(s) 169, 269
Bsp143I GATC 2 cut(s) 172, 308
Bsp1720I GCTNAGC 1 cut(s) 38
Bsp19I CCATGG 2 cut(s) 67, 428
BspANI GGCC 2 cut(s) 169, 269
BspCNI CTCAG 1 cut(s) 51
BspDI ATCGAT 1 cut(s) 210
BspLI GGNNCC 1 cut(s) 108
BsrDI GCAATG 1 cut(s) 394
BsrFI RCCGGY 1 cut(s) 479
BsrI ACTGG 2 cut(s) 108, 460
BssAI RCCGGY 1 cut(s) 479
BssECI CCNNGG 3 cut(s) 67, 110, 428
BssMI GATC 2 cut(s) 172, 308
BssNAI GTATAC 1 cut(s) 124
BssT1I CCWWGG 3 cut(s) 67, 110, 428
Bst1107I GTATAC 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 481
BstDEI CTNAG 2 cut(s) 38, 324
BstDSI CCRYGG 2 cut(s) 67, 428
BstHHI GCGC 1 cut(s) 206
BstKTI GATC 2 cut(s) 175, 311
BstMBI GATC 2 cut(s) 172, 308
BstMWI GCNNNNNNNGC 1 cut(s) 489
BstZ17I GTATAC 1 cut(s) 124
Bsu15I ATCGAT 1 cut(s) 210
BsuRI GGCC 2 cut(s) 169, 269
BsuTUI ATCGAT 1 cut(s) 210
BtgI CCRYGG 2 cut(s) 67, 428
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 481
CaiI CAGNNNCTG 1 cut(s) 103
CfoI GCGC 1 cut(s) 206
Cfr10I RCCGGY 1 cut(s) 479
ClaI ATCGAT 1 cut(s) 210
Csp6I GTAC 1 cut(s) 425
CspCI CAANNNNNGTGG 2 cut(s) 272, 307
CviAII CATG 6 cut(s) 68, 201, 221, 429, 520, 525
CviJI RGCY 7 cut(s) 42, 169, 269, 370, 433, 483, 497
CviKI_1 RGCY 7 cut(s) 42, 169, 269, 370, 433, 483, 497
CviQI GTAC 1 cut(s) 425
DdeI CTNAG 2 cut(s) 38, 324
DpnI GATC 2 cut(s) 174, 310
DpnII GATC 2 cut(s) 172, 308
EaeI YGGCCR 1 cut(s) 267
Eco130I CCWWGG 3 cut(s) 67, 110, 428
Eco57I CTGAAG 1 cut(s) 289
EcoRI GAATTC 1 cut(s) 187
EcoT14I CCWWGG 3 cut(s) 67, 110, 428
EcoT22I ATGCAT 2 cut(s) 6, 222
ErhI CCWWGG 3 cut(s) 67, 110, 428
FaeI CATG 6 cut(s) 71, 204, 224, 432, 523, 528
FaqI GGGAC 1 cut(s) 330
FatI CATG 6 cut(s) 67, 200, 220, 428, 519, 524
FblI GTMKAC 1 cut(s) 123
FspBI CTAG 1 cut(s) 416
GlaI GCGC 1 cut(s) 205
HaeIII GGCC 2 cut(s) 169, 269
HapII CCGG 1 cut(s) 480
HhaI GCGC 1 cut(s) 206
Hin1II CATG 6 cut(s) 71, 204, 224, 432, 523, 528
Hin6I GCGC 1 cut(s) 204
HinP1I GCGC 1 cut(s) 204
HindIII AAGCTT 1 cut(s) 368
HpaII CCGG 1 cut(s) 480
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 2 cut(s) 124, 229
Hpy188I TCNGA 1 cut(s) 308
Hpy188III TCNNGA 1 cut(s) 416
Hpy8I GTNNAC 2 cut(s) 124, 229
HpyAV CCTTC 1 cut(s) 273
HpyCH4V TGCA 9 cut(s) 4, 25, 97, 180, 196, 220, 362, 400, 492
HpyF10VI GCNNNNNNNGC 1 cut(s) 489
HpyF3I CTNAG 2 cut(s) 38, 324
Hsp92II CATG 6 cut(s) 71, 204, 224, 432, 523, 528
HspAI GCGC 1 cut(s) 204
KroI GCCGGC 1 cut(s) 479
KroNI GCCGGC 1 cut(s) 481
Kzo9I GATC 2 cut(s) 172, 308
LpnPI CCDG 6 cut(s) 89, 183, 251, 419, 441, 493
MaeI CTAG 1 cut(s) 416
MalI GATC 2 cut(s) 174, 310
MboI GATC 2 cut(s) 172, 308
MfeI CAATTG 1 cut(s) 349
MlsI TGGCCA 1 cut(s) 269
MluCI AATT 6 cut(s) 187, 260, 349, 393, 472, 510
MluNI TGGCCA 1 cut(s) 269
MnlI CCTC 3 cut(s) 268, 413, 423
Mox20I TGGCCA 1 cut(s) 269
Mph1103I ATGCAT 2 cut(s) 6, 222
MroNI GCCGGC 1 cut(s) 479
MscI TGGCCA 1 cut(s) 269
MseI TTAA 1 cut(s) 44
Msp20I TGGCCA 1 cut(s) 269
MspI CCGG 1 cut(s) 480
MunI CAATTG 1 cut(s) 349
MwoI GCNNNNNNNGC 1 cut(s) 489
NaeI GCCGGC 1 cut(s) 481
NcoI CCATGG 2 cut(s) 67, 428
NdeII GATC 2 cut(s) 172, 308
NgoMIV GCCGGC 1 cut(s) 479
NlaIII CATG 6 cut(s) 71, 204, 224, 432, 523, 528
NlaIV GGNNCC 1 cut(s) 108
NsiI ATGCAT 2 cut(s) 6, 222
PdiI GCCGGC 1 cut(s) 481
PspN4I GGNNCC 1 cut(s) 108
PstNI CAGNNNCTG 1 cut(s) 103
RsaI GTAC 1 cut(s) 426
RsaNI GTAC 1 cut(s) 425
SaqAI TTAA 1 cut(s) 44
Sau3AI GATC 2 cut(s) 172, 308
SetI ASST 5 cut(s) 44, 372, 405, 415, 454
Sse9I AATT 6 cut(s) 187, 260, 349, 393, 472, 510
SspMI CTAG 1 cut(s) 416
StyI CCWWGG 3 cut(s) 67, 110, 428
TaqI TCGA 2 cut(s) 137, 210
TasI AATT 6 cut(s) 187, 260, 349, 393, 472, 510
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TscAI CASTG 1 cut(s) 154
TspDTI ATGAA 2 cut(s) 405, 483
TspRI CASTG 1 cut(s) 154
XapI RAATTY 3 cut(s) 187, 260, 472
XbaI TCTAGA 1 cut(s) 415
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 1 cut(s) 416
Zsp2I ATGCAT 2 cut(s) 6, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.