RchiOBHm_Chr3g0461951
ERF Family

Gamma-interferon-inducible lysosomal thiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0003951
Physical Location & Seq
Forward (+)
9828928 .. 9831110
2183 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42834

Sequence Viewer

Length: 567 bp
ATGTATTATGAAAGTTACTCTCTCTCTCTTTACTATGACTCTTTGAGCACATCTTGTGCAACATTCATCGTCAAGAATCTTGCTAAGATTTTCGATGATGATCTCATCACCATTCTCAATCTCAGACTGGTTCCTTGGGGTGATGCATACGCCAACAAATCGAACAACAGCACCGCTTTCTGTCAGCATAGGCCAGATGGGTGTAAGTTGAATTCTCTGGAAGCATGCGCTATCGATGTTATGCATGATGTGAATAAGCACTTTTCTTTGATTTACTGCATAGAATTTCTAGCCATAGAGGGAAGGCACAAGGAGTGGGAAACTTGCTTCAGTTCATTGGGACTGCCTAAGAAACCCACTTTGAATTGCTACAACAGTTCAAATGCAACAAAGCTTGAACAAAACTATGGCAATGAAACCATGCACCTCAATCCACCTCTAAAGTTTGTACCATGGCTGGTTCTGAACAATCAACCTATTGGAAATGACTATGAAATTTTGCTGGCCATGTGTGCAAGGCTTACAAAGGTAACATTGTGCCCATGGCATGTCAATCTGTGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 map04612
Pfam Domains
Protein Families
GILT

Protein Analysis

188

Amino Acids

21.46

Weight (kDa)

6.04

Isoelectric Point (pI)

44.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 8 - 112 3.3e-25 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 174
AcoI YGGCCR 1 cut(s) 504
AcsI RAATTY 3 cut(s) 211, 284, 495
AcuI CTGAAG 1 cut(s) 313
AfaI GTAC 1 cut(s) 450
AgsI TTSAA 4 cut(s) 211, 364, 381, 398
AluBI AGCT 1 cut(s) 394
AluI AGCT 1 cut(s) 394
Alw21I GWGCWC 1 cut(s) 50
AoxI GGCC 2 cut(s) 191, 504
ApoI RAATTY 3 cut(s) 211, 284, 495
AspLEI GCGC 1 cut(s) 230
AsuHPI GGTGA 2 cut(s) 100, 152
BaeGI GKGCMC 1 cut(s) 542
BalI TGGCCA 1 cut(s) 506
Bbv12I GWGCWC 1 cut(s) 50
BccI CCATC 1 cut(s) 191
BfaI CTAG 1 cut(s) 290
BmiI GGNNCC 1 cut(s) 132
BmsI GCATC 1 cut(s) 133
Bsa29I ATCGAT 1 cut(s) 234
BsaBI GATNNNNATC 1 cut(s) 99
BsaJI CCNNGG 3 cut(s) 134, 452, 542
Bse1I ACTGG 1 cut(s) 132
Bse3DI GCAATG 1 cut(s) 418
Bse8I GATNNNNATC 1 cut(s) 99
BseCI ATCGAT 1 cut(s) 234
BseDI CCNNGG 3 cut(s) 134, 452, 542
BseJI GATNNNNATC 1 cut(s) 99
BseMI GCAATG 1 cut(s) 418
BseMII CTCAG 1 cut(s) 136
BseNI ACTGG 1 cut(s) 132
BseSI GKGCMC 1 cut(s) 542
BshFI GGCC 2 cut(s) 193, 506
BshVI ATCGAT 1 cut(s) 234
BsiHKAI GWGCWC 1 cut(s) 50
BslFI GGGAC 1 cut(s) 354
BsmFI GGGAC 1 cut(s) 354
BsnI GGCC 2 cut(s) 193, 506
Bsp1286I GDGCHC 2 cut(s) 50, 542
Bsp143I GATC 1 cut(s) 100
Bsp19I CCATGG 2 cut(s) 452, 542
BspACI CCGC 1 cut(s) 174
BspANI GGCC 2 cut(s) 193, 506
BspCNI CTCAG 1 cut(s) 135
BspDI ATCGAT 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 132
BsrDI GCAATG 1 cut(s) 418
BsrI ACTGG 1 cut(s) 132
BssECI CCNNGG 3 cut(s) 134, 452, 542
BssMI GATC 1 cut(s) 100
BssT1I CCWWGG 3 cut(s) 134, 452, 542
Bst4CI ACNGT 1 cut(s) 377
BstC8I GCNNGC 2 cut(s) 226, 504
BstDEI CTNAG 3 cut(s) 84, 122, 348
BstDSI CCRYGG 2 cut(s) 452, 542
BstHHI GCGC 1 cut(s) 230
BstKTI GATC 1 cut(s) 103
BstMBI GATC 1 cut(s) 100
BstMWI GCNNNNNNNGC 1 cut(s) 512
BstNSI RCATGY 2 cut(s) 228, 551
BstSLI GKGCMC 1 cut(s) 542
Bsu15I ATCGAT 1 cut(s) 234
BsuRI GGCC 2 cut(s) 193, 506
BsuTUI ATCGAT 1 cut(s) 234
BtgI CCRYGG 2 cut(s) 452, 542
Cac8I GCNNGC 2 cut(s) 226, 504
CfoI GCGC 1 cut(s) 230
ClaI ATCGAT 1 cut(s) 234
Csp6I GTAC 1 cut(s) 449
CviAII CATG 7 cut(s) 225, 245, 421, 453, 508, 543, 548
CviJI RGCY 6 cut(s) 193, 293, 394, 457, 506, 520
CviKI_1 RGCY 6 cut(s) 193, 293, 394, 457, 506, 520
CviQI GTAC 1 cut(s) 449
DdeI CTNAG 3 cut(s) 84, 122, 348
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
EaeI YGGCCR 1 cut(s) 504
Eco130I CCWWGG 3 cut(s) 134, 452, 542
Eco57I CTGAAG 1 cut(s) 313
EcoRI GAATTC 1 cut(s) 211
EcoT14I CCWWGG 3 cut(s) 134, 452, 542
EcoT22I ATGCAT 2 cut(s) 148, 246
ErhI CCWWGG 3 cut(s) 134, 452, 542
FaeI CATG 7 cut(s) 228, 248, 424, 456, 511, 546, 551
FaqI GGGAC 1 cut(s) 354
FatI CATG 7 cut(s) 224, 244, 420, 452, 507, 542, 547
FspBI CTAG 1 cut(s) 290
GlaI GCGC 1 cut(s) 229
HaeIII GGCC 2 cut(s) 193, 506
HhaI GCGC 1 cut(s) 230
Hin1II CATG 7 cut(s) 228, 248, 424, 456, 511, 546, 551
Hin6I GCGC 1 cut(s) 228
HinP1I GCGC 1 cut(s) 228
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 2 cut(s) 38, 76
HphI GGTGA 2 cut(s) 100, 152
Hpy188I TCNGA 2 cut(s) 125, 465
Hpy188III TCNNGA 2 cut(s) 73, 218
HpyAV CCTTC 1 cut(s) 297
HpyCH4III ACNGT 1 cut(s) 377
HpyCH4V TGCA 8 cut(s) 59, 146, 244, 279, 386, 424, 515, 561
HpyF10VI GCNNNNNNNGC 1 cut(s) 512
HpyF3I CTNAG 3 cut(s) 84, 122, 348
Hsp92II CATG 7 cut(s) 228, 248, 424, 456, 511, 546, 551
HspAI GCGC 1 cut(s) 228
Kzo9I GATC 1 cut(s) 100
LpnPI CCDG 5 cut(s) 113, 203, 207, 443, 488
LweI GCATC 1 cut(s) 133
MaeI CTAG 1 cut(s) 290
MaeIII GTNAC 2 cut(s) 14, 529
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MhlI GDGCHC 2 cut(s) 50, 542
MlsI TGGCCA 1 cut(s) 506
MluCI AATT 4 cut(s) 211, 284, 364, 495
MluNI TGGCCA 1 cut(s) 506
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 3 cut(s) 292, 437, 447
Mox20I TGGCCA 1 cut(s) 506
Mph1103I ATGCAT 2 cut(s) 148, 246
MscI TGGCCA 1 cut(s) 506
Msp20I TGGCCA 1 cut(s) 506
MwoI GCNNNNNNNGC 1 cut(s) 512
NcoI CCATGG 2 cut(s) 452, 542
NdeII GATC 1 cut(s) 100
NlaIII CATG 7 cut(s) 228, 248, 424, 456, 511, 546, 551
NlaIV GGNNCC 1 cut(s) 132
NsiI ATGCAT 2 cut(s) 148, 246
NspI RCATGY 2 cut(s) 228, 551
PaeI GCATGC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 76
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 132
RsaI GTAC 1 cut(s) 450
RsaNI GTAC 1 cut(s) 449
Sau3AI GATC 1 cut(s) 100
SchI GAGTC 1 cut(s) 32
SduI GDGCHC 2 cut(s) 50, 542
SetI ASST 5 cut(s) 396, 429, 439, 478, 531
SfaNI GCATC 1 cut(s) 133
SphI GCATGC 1 cut(s) 228
Sse9I AATT 4 cut(s) 211, 284, 364, 495
SsiI CCGC 1 cut(s) 174
SspMI CTAG 1 cut(s) 290
StyI CCWWGG 3 cut(s) 134, 452, 542
TaaI ACNGT 1 cut(s) 377
TaqI TCGA 3 cut(s) 93, 161, 234
TasI AATT 4 cut(s) 211, 284, 364, 495
TfiI GAWTC 1 cut(s) 76
TspDTI ATGAA 5 cut(s) 24, 55, 324, 429, 507
XapI RAATTY 3 cut(s) 211, 284, 495
XceI RCATGY 2 cut(s) 228, 551
XspI CTAG 1 cut(s) 290
Zsp2I ATGCAT 2 cut(s) 148, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.