RchiOBHm_Chr3g0461901
ERF Family

Gamma-interferon-inducible lysosomal thiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0003951
Physical Location & Seq
Forward (+)
9815473 .. 9816097
625 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42829

Sequence Viewer

Length: 435 bp
ATGGCATCTGCTCTATTCTTTACTTGTCTGACCTGTTCAATGTTCCTGCTTACTATTCCTTATTATGTTGCTACTCAGAAAGTTACTCTCTCGCTTTACTATGACTCTTTGAGCACATCTTGTGCAACCTTCATCGTCAAGAATCTTGCTAAGATTTTCTATGTTGATCTCATCACCATTCTCAATCTCAGACTGGTTCCTTGGAGTGATGCATACGCCAACAAATCAAACAACAGCACCGCTTTCTGTCAGCATAGGCCAGATGGGTGTAAGTTGAATTCTCTGGAAGCATGCGCTATCGATGTTATGCATGATGTGAACAAGCACTTTGCTTTGATTTACTGCATAGAATTTCTGGCCATAGAGGGAAGGCACAAGGAGTGGGAAACTTGCATTGCTTCAGTTCATTGGGACTGCCTAAGAAACCCACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 map04612
Pfam Domains
Protein Families
GILT

Protein Analysis

144

Amino Acids

16.4

Weight (kDa)

6.48

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 30 - 133 1.5e-23 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 240
AcoI YGGCCR 1 cut(s) 357
AcsI RAATTY 2 cut(s) 277, 350
AcuI CTGAAG 1 cut(s) 384
AgsI TTSAA 2 cut(s) 39, 277
Alw21I GWGCWC 1 cut(s) 116
AoxI GGCC 2 cut(s) 257, 357
ApoI RAATTY 2 cut(s) 277, 350
AspLEI GCGC 1 cut(s) 296
AsuHPI GGTGA 1 cut(s) 166
BalI TGGCCA 1 cut(s) 359
Bbv12I GWGCWC 1 cut(s) 116
BccI CCATC 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 198
BmsI GCATC 2 cut(s) 14, 199
Bsa29I ATCGAT 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 198
Bse3DI GCAATG 1 cut(s) 393
BseCI ATCGAT 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 200
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 2 cut(s) 89, 202
BseNI ACTGG 1 cut(s) 198
BshFI GGCC 2 cut(s) 259, 359
BshVI ATCGAT 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 116
BslFI GGGAC 1 cut(s) 425
BsmFI GGGAC 1 cut(s) 425
BsnI GGCC 2 cut(s) 259, 359
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 1 cut(s) 240
BspANI GGCC 2 cut(s) 259, 359
BspCNI CTCAG 2 cut(s) 88, 201
BspDI ATCGAT 1 cut(s) 300
BspLI GGNNCC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 393
BsrI ACTGG 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 1 cut(s) 166
BssT1I CCWWGG 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 292
BstDEI CTNAG 4 cut(s) 75, 150, 188, 419
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstNSI RCATGY 1 cut(s) 294
Bsu15I ATCGAT 1 cut(s) 300
BsuRI GGCC 2 cut(s) 259, 359
BsuTUI ATCGAT 1 cut(s) 300
Cac8I GCNNGC 1 cut(s) 292
CfoI GCGC 1 cut(s) 296
ClaI ATCGAT 1 cut(s) 300
CviAII CATG 2 cut(s) 291, 311
CviJI RGCY 2 cut(s) 259, 359
CviKI_1 RGCY 2 cut(s) 259, 359
DdeI CTNAG 4 cut(s) 75, 150, 188, 419
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 357
Eco130I CCWWGG 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 384
EcoRI GAATTC 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 200
EcoT22I ATGCAT 2 cut(s) 214, 312
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 2 cut(s) 294, 314
FaqI GGGAC 1 cut(s) 425
FatI CATG 2 cut(s) 290, 310
GlaI GCGC 1 cut(s) 295
HaeIII GGCC 2 cut(s) 259, 359
HhaI GCGC 1 cut(s) 296
Hin1II CATG 2 cut(s) 294, 314
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HinfI GANTC 2 cut(s) 104, 142
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 3 cut(s) 30, 78, 191
Hpy188III TCNNGA 2 cut(s) 139, 284
Hpy8I GTNNAC 1 cut(s) 319
HpyAV CCTTC 2 cut(s) 139, 363
HpyCH4V TGCA 5 cut(s) 125, 212, 310, 345, 393
HpyF3I CTNAG 4 cut(s) 75, 150, 188, 419
Hsp92II CATG 2 cut(s) 294, 314
HspAI GCGC 1 cut(s) 294
Kzo9I GATC 1 cut(s) 166
LpnPI CCDG 6 cut(s) 46, 59, 179, 269, 273, 341
LweI GCATC 2 cut(s) 14, 199
MaeIII GTNAC 1 cut(s) 82
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 116
MlsI TGGCCA 1 cut(s) 359
MluCI AATT 2 cut(s) 277, 350
MluNI TGGCCA 1 cut(s) 359
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 1 cut(s) 358
Mox20I TGGCCA 1 cut(s) 359
Mph1103I ATGCAT 2 cut(s) 214, 312
MscI TGGCCA 1 cut(s) 359
Msp20I TGGCCA 1 cut(s) 359
NdeII GATC 1 cut(s) 166
NlaIII CATG 2 cut(s) 294, 314
NlaIV GGNNCC 1 cut(s) 198
NsiI ATGCAT 2 cut(s) 214, 312
NspI RCATGY 1 cut(s) 294
PaeI GCATGC 1 cut(s) 294
PfeI GAWTC 1 cut(s) 142
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PspN4I GGNNCC 1 cut(s) 198
Sau3AI GATC 1 cut(s) 166
SchI GAGTC 1 cut(s) 98
SduI GDGCHC 1 cut(s) 116
SetI ASST 2 cut(s) 35, 131
SfaNI GCATC 2 cut(s) 14, 199
SphI GCATGC 1 cut(s) 294
Sse9I AATT 2 cut(s) 277, 350
SsiI CCGC 1 cut(s) 240
StyI CCWWGG 1 cut(s) 200
TaqI TCGA 1 cut(s) 300
TasI AATT 2 cut(s) 277, 350
TfiI GAWTC 1 cut(s) 142
TspDTI ATGAA 2 cut(s) 121, 395
XapI RAATTY 2 cut(s) 277, 350
XceI RCATGY 1 cut(s) 294
Zsp2I ATGCAT 2 cut(s) 214, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.