Rh7DG312200

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0003951
Physical Location & Seq
Forward (+)
36647995 .. 36648434
440 bp
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UTR
Exon/CDS
Intron
Rh7DG312200.1

Sequence Viewer

Length: 330 bp
ATGGCCTCTGCTCTATTCTTCACTTGTCTCATTACCTGTTCAGTGTTCTTGCTTACTATTCCTTGTTATGTTGCTAATCAGAAAGTTACTCTCTCACTTTACTATGACTCTTTGAGCACATCTTGTGCTACCTTCATCGTCAAGAATCTTGCTAAGATTTTCGATGATGATCTCATCACCATTCTCAATCTCAGATTGGTTCCTTGGGGTGATGCATACGCCAACAAATCGAACAACAGCACCGCTTTCTGTCAGCATAGGCCAGATGGGTGTAAGTTGAATTTTTTGGAAGCATGCGCTATCGATGTTATGCATGATGTGGTGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

109

Amino Acids

12.15

Weight (kDa)

6.0

Isoelectric Point (pI)

34.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 31 - 106 9.6e-19 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 243
AcsI RAATTY 1 cut(s) 280
AgsI TTSAA 1 cut(s) 280
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 32
AoxI GGCC 2 cut(s) 3, 260
ApoI RAATTY 1 cut(s) 280
AspLEI GCGC 1 cut(s) 299
AsuHPI GGTGA 2 cut(s) 169, 221
Bbv12I GWGCWC 1 cut(s) 119
BccI CCATC 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 201
BmsI GCATC 1 cut(s) 202
Bsa29I ATCGAT 1 cut(s) 303
BsaBI GATNNNNATC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 203
Bse8I GATNNNNATC 1 cut(s) 168
BseCI ATCGAT 1 cut(s) 303
BseDI CCNNGG 1 cut(s) 203
BseJI GATNNNNATC 1 cut(s) 168
BseMII CTCAG 1 cut(s) 205
BshFI GGCC 2 cut(s) 5, 262
BshVI ATCGAT 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 32
BsnI GGCC 2 cut(s) 5, 262
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 1 cut(s) 169
BspACI CCGC 1 cut(s) 243
BspANI GGCC 2 cut(s) 5, 262
BspCNI CTCAG 1 cut(s) 204
BspDI ATCGAT 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 1 cut(s) 169
BssT1I CCWWGG 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 295
BstDEI CTNAG 2 cut(s) 153, 191
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 1 cut(s) 172
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 1 cut(s) 169
BstNSI RCATGY 1 cut(s) 297
Bsu15I ATCGAT 1 cut(s) 303
BsuRI GGCC 2 cut(s) 5, 262
BsuTUI ATCGAT 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 295
CfoI GCGC 1 cut(s) 299
ClaI ATCGAT 1 cut(s) 303
CviAII CATG 2 cut(s) 294, 314
CviJI RGCY 2 cut(s) 5, 262
CviKI_1 RGCY 2 cut(s) 5, 262
DdeI CTNAG 2 cut(s) 153, 191
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 203
EcoT14I CCWWGG 1 cut(s) 203
EcoT22I ATGCAT 2 cut(s) 217, 315
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 2 cut(s) 297, 317
FaiI YATR 7 cut(s) 69, 105, 217, 258, 295, 311, 315
FatI CATG 2 cut(s) 293, 313
GlaI GCGC 1 cut(s) 298
HaeIII GGCC 2 cut(s) 5, 262
HhaI GCGC 1 cut(s) 299
Hin1II CATG 2 cut(s) 297, 317
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HinfI GANTC 2 cut(s) 107, 145
HphI GGTGA 2 cut(s) 169, 221
Hpy188I TCNGA 2 cut(s) 81, 194
Hpy188III TCNNGA 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 142
HpyCH4V TGCA 2 cut(s) 215, 313
HpyF3I CTNAG 2 cut(s) 153, 191
Hsp92II CATG 2 cut(s) 297, 317
HspAI GCGC 1 cut(s) 297
Kzo9I GATC 1 cut(s) 169
LpnPI CCDG 2 cut(s) 49, 276
LweI GCATC 1 cut(s) 202
MaeIII GTNAC 1 cut(s) 85
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 1 cut(s) 10
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 1 cut(s) 280
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 1 cut(s) 16
Mph1103I ATGCAT 2 cut(s) 217, 315
NdeII GATC 1 cut(s) 169
NlaIII CATG 2 cut(s) 297, 317
NlaIV GGNNCC 1 cut(s) 201
NsiI ATGCAT 2 cut(s) 217, 315
NspI RCATGY 1 cut(s) 297
PaeI GCATGC 1 cut(s) 297
PfeI GAWTC 1 cut(s) 145
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 201
Sau3AI GATC 1 cut(s) 169
SchI GAGTC 1 cut(s) 101
SduI GDGCHC 1 cut(s) 119
SetI ASST 2 cut(s) 38, 134
SfaNI GCATC 1 cut(s) 202
SphI GCATGC 1 cut(s) 297
Sse9I AATT 1 cut(s) 280
SsiI CCGC 1 cut(s) 243
StyI CCWWGG 1 cut(s) 203
TaqI TCGA 3 cut(s) 162, 230, 303
TasI AATT 1 cut(s) 280
TfiI GAWTC 1 cut(s) 145
TscAI CASTG 1 cut(s) 48
TspDTI ATGAA 1 cut(s) 124
TspRI CASTG 1 cut(s) 48
XapI RAATTY 1 cut(s) 280
XceI RCATGY 1 cut(s) 297
Zsp2I ATGCAT 2 cut(s) 217, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.