RchiOBHm_Chr7g0217871

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0003951
Physical Location & Seq
Forward (+)
35801788 .. 35802478
691 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19500

Sequence Viewer

Length: 492 bp
ATGATTATGATCTGGCCATCAATAATATCAGAGTACCAAACCCAACAAAAGAAATTAAAAGTGAAGAGGGAAACTACTTACTACTACATATGTACAACACTTCTGAAACAGATCTCAACCTCAAAAATGGCCTCTGCTCTATTCTTCACTTGTCTCATTACCTGTTCAGTGTTCTTGCTTACTATTCCTTGTTATGTTGCTAATCAGAAAGTTACTCTCTCGCTTTACTATGACTCTTTGAGCACATCTTGTGCTACTTTCATCGTCAAGAATCTTGCTAAGATTTTCGATGATGATCTCATCACCATTCTCAATCTCAGACTGGTTCCTTGGGGTGATGCATACGCCAACAAATCGAACAACAGCACCGCTTTCTGTCAGCATAGGCCAGATGGGTGTAAGTTGAATTTTCTGGAAGCATGCGCTATCGATGTTATGCATGATGTGAACAAGCACTTCGCTTTGATTTACTGCATAGAATTTTGGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

163

Amino Acids

18.73

Weight (kDa)

8.34

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 73 - 160 9.9e-23 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 369
AcoI YGGCCR 2 cut(s) 14, 485
AcsI RAATTY 2 cut(s) 406, 479
AfaI GTAC 2 cut(s) 35, 94
AgsI TTSAA 1 cut(s) 406
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 1 cut(s) 158
AoxI GGCC 4 cut(s) 14, 129, 386, 485
ApoI RAATTY 2 cut(s) 406, 479
AspLEI GCGC 1 cut(s) 425
AsuHPI GGTGA 2 cut(s) 295, 347
BalI TGGCCA 2 cut(s) 16, 487
Bbv12I GWGCWC 1 cut(s) 245
BccI CCATC 2 cut(s) 25, 386
BcoDI GTCTC 1 cut(s) 158
BglII AGATCT 1 cut(s) 111
BmiI GGNNCC 1 cut(s) 327
BmsI GCATC 1 cut(s) 328
Bsa29I ATCGAT 1 cut(s) 429
BsaBI GATNNNNATC 2 cut(s) 8, 294
BsaJI CCNNGG 1 cut(s) 329
Bse1I ACTGG 1 cut(s) 327
Bse8I GATNNNNATC 2 cut(s) 8, 294
BseCI ATCGAT 1 cut(s) 429
BseDI CCNNGG 1 cut(s) 329
BseJI GATNNNNATC 2 cut(s) 8, 294
BseMII CTCAG 1 cut(s) 331
BseNI ACTGG 1 cut(s) 327
BshFI GGCC 4 cut(s) 16, 131, 388, 487
BshVI ATCGAT 1 cut(s) 429
BsiHKAI GWGCWC 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 158
BsnI GGCC 4 cut(s) 16, 131, 388, 487
Bsp1286I GDGCHC 1 cut(s) 245
Bsp1407I TGTACA 1 cut(s) 92
Bsp143I GATC 3 cut(s) 9, 111, 295
BspACI CCGC 1 cut(s) 369
BspANI GGCC 4 cut(s) 16, 131, 388, 487
BspCNI CTCAG 1 cut(s) 330
BspDI ATCGAT 1 cut(s) 429
BspLI GGNNCC 1 cut(s) 327
BsrGI TGTACA 1 cut(s) 92
BsrI ACTGG 1 cut(s) 327
BssECI CCNNGG 1 cut(s) 329
BssMI GATC 3 cut(s) 9, 111, 295
BssT1I CCWWGG 1 cut(s) 329
Bst6I CTCTTC 1 cut(s) 59
BstAUI TGTACA 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 421
BstDEI CTNAG 2 cut(s) 279, 317
BstHHI GCGC 1 cut(s) 425
BstKTI GATC 3 cut(s) 12, 114, 298
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 3 cut(s) 9, 111, 295
BstNSI RCATGY 1 cut(s) 423
BstX2I RGATCY 1 cut(s) 111
BstYI RGATCY 1 cut(s) 111
Bsu15I ATCGAT 1 cut(s) 429
BsuRI GGCC 4 cut(s) 16, 131, 388, 487
BsuTUI ATCGAT 1 cut(s) 429
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 421
CfoI GCGC 1 cut(s) 425
ClaI ATCGAT 1 cut(s) 429
Csp6I GTAC 2 cut(s) 34, 93
CviAII CATG 2 cut(s) 420, 440
CviJI RGCY 4 cut(s) 16, 131, 388, 487
CviKI_1 RGCY 4 cut(s) 16, 131, 388, 487
CviQI GTAC 2 cut(s) 34, 93
DdeI CTNAG 2 cut(s) 279, 317
DpnI GATC 3 cut(s) 11, 113, 297
DpnII GATC 3 cut(s) 9, 111, 295
EaeI YGGCCR 2 cut(s) 14, 485
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Eco130I CCWWGG 1 cut(s) 329
EcoT14I CCWWGG 1 cut(s) 329
EcoT22I ATGCAT 2 cut(s) 343, 441
ErhI CCWWGG 1 cut(s) 329
FaeI CATG 2 cut(s) 423, 443
FatI CATG 2 cut(s) 419, 439
FauNDI CATATG 1 cut(s) 89
GlaI GCGC 1 cut(s) 424
HaeIII GGCC 4 cut(s) 16, 131, 388, 487
HhaI GCGC 1 cut(s) 425
Hin1II CATG 2 cut(s) 423, 443
Hin6I GCGC 1 cut(s) 423
HinP1I GCGC 1 cut(s) 423
HinfI GANTC 2 cut(s) 233, 271
HphI GGTGA 2 cut(s) 295, 347
Hpy166II GTNNAC 1 cut(s) 448
Hpy188I TCNGA 4 cut(s) 31, 105, 207, 320
Hpy188III TCNNGA 2 cut(s) 268, 413
Hpy8I GTNNAC 1 cut(s) 448
HpyCH4V TGCA 3 cut(s) 341, 439, 474
HpyF3I CTNAG 2 cut(s) 279, 317
Hsp92II CATG 2 cut(s) 423, 443
HspAI GCGC 1 cut(s) 423
Kzo9I GATC 3 cut(s) 9, 111, 295
LpnPI CCDG 4 cut(s) 175, 308, 398, 402
LweI GCATC 1 cut(s) 328
MaeIII GTNAC 1 cut(s) 211
MalI GATC 3 cut(s) 11, 113, 297
MboI GATC 3 cut(s) 9, 111, 295
MboII GAAGA 2 cut(s) 76, 136
MflI RGATCY 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 245
MlsI TGGCCA 2 cut(s) 16, 487
MluCI AATT 3 cut(s) 53, 406, 479
MluNI TGGCCA 2 cut(s) 16, 487
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 3 cut(s) 60, 130, 142
Mox20I TGGCCA 2 cut(s) 16, 487
Mph1103I ATGCAT 2 cut(s) 343, 441
MscI TGGCCA 2 cut(s) 16, 487
MseI TTAA 1 cut(s) 56
Msp20I TGGCCA 2 cut(s) 16, 487
NdeI CATATG 1 cut(s) 89
NdeII GATC 3 cut(s) 9, 111, 295
NlaIII CATG 2 cut(s) 423, 443
NlaIV GGNNCC 1 cut(s) 327
NsiI ATGCAT 2 cut(s) 343, 441
NspI RCATGY 1 cut(s) 423
PaeI GCATGC 1 cut(s) 423
PfeI GAWTC 1 cut(s) 271
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PspN4I GGNNCC 1 cut(s) 327
PsuI RGATCY 1 cut(s) 111
RsaI GTAC 2 cut(s) 35, 94
RsaNI GTAC 2 cut(s) 34, 93
SaqAI TTAA 1 cut(s) 56
Sau3AI GATC 3 cut(s) 9, 111, 295
SchI GAGTC 1 cut(s) 227
SduI GDGCHC 1 cut(s) 245
SetI ASST 2 cut(s) 122, 164
SfaNI GCATC 1 cut(s) 328
SphI GCATGC 1 cut(s) 423
Sse9I AATT 3 cut(s) 53, 406, 479
SsiI CCGC 1 cut(s) 369
StyI CCWWGG 1 cut(s) 329
TaqI TCGA 3 cut(s) 288, 356, 429
TasI AATT 3 cut(s) 53, 406, 479
TatI WGTACW 1 cut(s) 92
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TscAI CASTG 1 cut(s) 174
TspDTI ATGAA 1 cut(s) 250
TspRI CASTG 1 cut(s) 174
XapI RAATTY 2 cut(s) 406, 479
XceI RCATGY 1 cut(s) 423
Zsp2I ATGCAT 2 cut(s) 343, 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.