Rh3CG118200
ERF Family

Gamma-interferon-inducible lysosomal thiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0003951
Physical Location & Seq
Forward (+)
9512232 .. 9554804
42573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG118200.1

Sequence Viewer

Length: 714 bp
ATGGGCTCATCCCCATCGTCAATCTCAGAATGGTCCCTTGGGGCAATGCTTGGCTCAATTCCGATGGCTCCTTCGCCTGCCAGAATCGGCATTTTACATTCTTCCATTGCGTTGAGAGGCTCACATTGCAGAACAAGCACAGTAAATGGGGATTTTGAAATGTCGAAGTTGGGGACTGTACCTATCGATTGCTACAACAGTGGATATGGCAATCAGATTTTCGATGATGATCTCATCACCATTCTCAATCTCAGACTGGTTCCTTGGGGTGATGCATACGCCAACAAATCGAACAACAGCACCGCTTTCTGTCAGCATAGGCCAGATGGGTGTAAGTTGAATTCTCTGGAAGCATGCGCTATCGATGTTATGCATGATGTGAACAAGCACTTTGCTTTGATTTACTGCATAGAATTTCTGGCCATAGAGGGAAGGCACAAGGAGTGGGAAACTTGCTTCAGTTCATTGGGACTGCCTAAGAAACCCACTTTGAATTGCTACAACAGTTCAAATGCAACAAAGCTTGAACAAAACTATGGCAATCAAACCATGCACCTCAATCCACCTCTAAAGTTTGTACCATGGCTGGTTCTGAACGATCAACCTATTGGAAATGACTATGAAAATTTTGCTGGCTATGTGTGCAAGGCTTACAAAGGTAACATTGTGCCCATGGCATGTCAATCTGTGCATTTGAAGCAGAAGACAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 map04612
Pfam Domains
Protein Families
GILT

Protein Analysis

237

Amino Acids

26.18

Weight (kDa)

6.43

Isoelectric Point (pI)

44.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 73 - 155 2.1e-17 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 303
AcoI YGGCCR 1 cut(s) 420
AcsI RAATTY 3 cut(s) 340, 413, 625
AcuI CTGAAG 1 cut(s) 442
AfaI GTAC 2 cut(s) 180, 579
AgsI TTSAA 6 cut(s) 158, 340, 493, 510, 527, 697
AjuI GAANNNNNNNTTGG 2 cut(s) 21, 53
AluBI AGCT 1 cut(s) 523
AluI AGCT 1 cut(s) 523
AoxI GGCC 2 cut(s) 320, 420
ApoI RAATTY 3 cut(s) 340, 413, 625
AspLEI GCGC 1 cut(s) 359
AspS9I GGNCC 1 cut(s) 33
AsuHPI GGTGA 2 cut(s) 229, 281
AvaII GGWCC 1 cut(s) 33
BaeGI GKGCMC 1 cut(s) 672
BalI TGGCCA 1 cut(s) 422
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 710
BccI CCATC 3 cut(s) 22, 58, 320
Bme18I GGWCC 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 33
BmiI GGNNCC 3 cut(s) 35, 69, 261
BmsI GCATC 1 cut(s) 262
BpiI GAAGAC 1 cut(s) 710
Bsa29I ATCGAT 2 cut(s) 186, 363
BsaBI GATNNNNATC 1 cut(s) 228
BsaJI CCNNGG 4 cut(s) 37, 263, 581, 672
Bse1I ACTGG 1 cut(s) 261
Bse3DI GCAATG 3 cut(s) 51, 105, 124
Bse8I GATNNNNATC 1 cut(s) 228
BseCI ATCGAT 2 cut(s) 186, 363
BseDI CCNNGG 4 cut(s) 37, 263, 581, 672
BseGI GGATG 1 cut(s) 8
BseJI GATNNNNATC 1 cut(s) 228
BseMI GCAATG 3 cut(s) 51, 105, 124
BseMII CTCAG 2 cut(s) 39, 265
BseNI ACTGG 1 cut(s) 261
BseSI GKGCMC 1 cut(s) 672
BshFI GGCC 2 cut(s) 322, 422
BshVI ATCGAT 2 cut(s) 186, 363
BslFI GGGAC 3 cut(s) 19, 187, 483
BsmFI GGGAC 3 cut(s) 19, 187, 483
BsnI GGCC 2 cut(s) 322, 422
Bsp1286I GDGCHC 2 cut(s) 8, 672
Bsp143I GATC 2 cut(s) 229, 598
Bsp19I CCATGG 2 cut(s) 581, 672
BspACI CCGC 1 cut(s) 303
BspANI GGCC 2 cut(s) 322, 422
BspCNI CTCAG 2 cut(s) 38, 264
BspDI ATCGAT 2 cut(s) 186, 363
BspLI GGNNCC 3 cut(s) 35, 69, 261
BsrDI GCAATG 3 cut(s) 51, 105, 124
BsrI ACTGG 1 cut(s) 261
BssECI CCNNGG 4 cut(s) 37, 263, 581, 672
BssMI GATC 2 cut(s) 229, 598
BssT1I CCWWGG 4 cut(s) 37, 263, 581, 672
Bst4CI ACNGT 4 cut(s) 142, 178, 200, 506
BstC8I GCNNGC 3 cut(s) 78, 355, 634
BstDEI CTNAG 3 cut(s) 25, 251, 477
BstDSI CCRYGG 2 cut(s) 581, 672
BstF5I GGATG 1 cut(s) 8
BstHHI GCGC 1 cut(s) 359
BstKTI GATC 2 cut(s) 232, 601
BstMBI GATC 2 cut(s) 229, 598
BstMWI GCNNNNNNNGC 4 cut(s) 126, 135, 642, 697
BstNSI RCATGY 2 cut(s) 357, 681
BstSLI GKGCMC 1 cut(s) 672
BstV2I GAAGAC 1 cut(s) 710
Bsu15I ATCGAT 2 cut(s) 186, 363
BsuRI GGCC 2 cut(s) 322, 422
BsuTUI ATCGAT 2 cut(s) 186, 363
BtgI CCRYGG 2 cut(s) 581, 672
BtsCI GGATG 1 cut(s) 8
BtsIMutI CAGTG 1 cut(s) 205
Cac8I GCNNGC 3 cut(s) 78, 355, 634
CfoI GCGC 1 cut(s) 359
Cfr13I GGNCC 1 cut(s) 33
ClaI ATCGAT 2 cut(s) 186, 363
Csp6I GTAC 2 cut(s) 179, 578
CviAII CATG 6 cut(s) 354, 374, 550, 582, 673, 678
CviQI GTAC 2 cut(s) 179, 578
DdeI CTNAG 3 cut(s) 25, 251, 477
DpnI GATC 2 cut(s) 231, 600
DpnII GATC 2 cut(s) 229, 598
EaeI YGGCCR 1 cut(s) 420
Eco130I CCWWGG 4 cut(s) 37, 263, 581, 672
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 33
Eco57I CTGAAG 1 cut(s) 442
EcoRI GAATTC 1 cut(s) 340
EcoT14I CCWWGG 4 cut(s) 37, 263, 581, 672
EcoT22I ATGCAT 2 cut(s) 277, 375
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 4 cut(s) 37, 263, 581, 672
FaeI CATG 6 cut(s) 357, 377, 553, 585, 676, 681
FaqI GGGAC 3 cut(s) 19, 187, 483
FatI CATG 6 cut(s) 353, 373, 549, 581, 672, 677
FriOI GRGCYC 1 cut(s) 8
GlaI GCGC 1 cut(s) 358
HaeIII GGCC 2 cut(s) 322, 422
HhaI GCGC 1 cut(s) 359
Hin1II CATG 6 cut(s) 357, 377, 553, 585, 676, 681
Hin6I GCGC 1 cut(s) 357
HinP1I GCGC 1 cut(s) 357
HindIII AAGCTT 1 cut(s) 521
HinfI GANTC 1 cut(s) 84
HphI GGTGA 2 cut(s) 229, 281
Hpy166II GTNNAC 1 cut(s) 382
Hpy188I TCNGA 5 cut(s) 28, 63, 216, 254, 594
Hpy188III TCNNGA 1 cut(s) 347
Hpy8I GTNNAC 1 cut(s) 382
HpyAV CCTTC 2 cut(s) 81, 426
HpyCH4III ACNGT 4 cut(s) 142, 178, 200, 506
HpyCH4V TGCA 8 cut(s) 129, 275, 373, 408, 515, 553, 645, 691
HpyF10VI GCNNNNNNNGC 4 cut(s) 126, 135, 642, 697
HpyF3I CTNAG 3 cut(s) 25, 251, 477
Hsp92II CATG 6 cut(s) 357, 377, 553, 585, 676, 681
HspAI GCGC 1 cut(s) 357
Kzo9I GATC 2 cut(s) 229, 598
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 8 cut(s) 90, 94, 242, 332, 336, 404, 572, 618
LweI GCATC 1 cut(s) 262
MaeIII GTNAC 1 cut(s) 659
MalI GATC 2 cut(s) 231, 600
MboI GATC 2 cut(s) 229, 598
MboII GAAGA 1 cut(s) 93
MhlI GDGCHC 2 cut(s) 8, 672
MlsI TGGCCA 1 cut(s) 422
MluCI AATT 5 cut(s) 57, 340, 413, 493, 625
MluNI TGGCCA 1 cut(s) 422
MnlI CCTC 4 cut(s) 110, 421, 566, 576
Mox20I TGGCCA 1 cut(s) 422
Mph1103I ATGCAT 2 cut(s) 277, 375
MscI TGGCCA 1 cut(s) 422
Msp20I TGGCCA 1 cut(s) 422
MwoI GCNNNNNNNGC 4 cut(s) 126, 135, 642, 697
NcoI CCATGG 2 cut(s) 581, 672
NdeII GATC 2 cut(s) 229, 598
NlaIII CATG 6 cut(s) 357, 377, 553, 585, 676, 681
NlaIV GGNNCC 3 cut(s) 35, 69, 261
NsiI ATGCAT 2 cut(s) 277, 375
NspI RCATGY 2 cut(s) 357, 681
PaeI GCATGC 1 cut(s) 357
PfeI GAWTC 1 cut(s) 84
PspN4I GGNNCC 3 cut(s) 35, 69, 261
PspPI GGNCC 1 cut(s) 33
RsaI GTAC 2 cut(s) 180, 579
RsaNI GTAC 2 cut(s) 179, 578
Sau3AI GATC 2 cut(s) 229, 598
Sau96I GGNCC 1 cut(s) 33
SduI GDGCHC 2 cut(s) 8, 672
SetI ASST 6 cut(s) 184, 525, 558, 568, 607, 661
SfaNI GCATC 1 cut(s) 262
SinI GGWCC 1 cut(s) 33
SphI GCATGC 1 cut(s) 357
Sse9I AATT 5 cut(s) 57, 340, 413, 493, 625
SsiI CCGC 1 cut(s) 303
StyI CCWWGG 4 cut(s) 37, 263, 581, 672
TaaI ACNGT 4 cut(s) 142, 178, 200, 506
TaqI TCGA 5 cut(s) 164, 186, 222, 290, 363
TasI AATT 5 cut(s) 57, 340, 413, 493, 625
TfiI GAWTC 1 cut(s) 84
TscAI CASTG 1 cut(s) 205
TspDTI ATGAA 2 cut(s) 453, 636
TspRI CASTG 1 cut(s) 205
VpaK11BI GGWCC 1 cut(s) 33
XapI RAATTY 3 cut(s) 340, 413, 625
XceI RCATGY 2 cut(s) 357, 681
Zsp2I ATGCAT 2 cut(s) 277, 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.