Rw0G017260

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00772
OG0003951
Physical Location & Seq
Forward (+)
18957 .. 20590
1634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G017260.1

Sequence Viewer

Length: 432 bp
ATGGCTAATCAGAAAGTTACTCTCTCGCTTTACTATGACTCTTTGAGCACATCTTGTGCTAGTTTCATCGTCAAGAATCTTGCTAAGATTTTCGATGATGATCTCATCACCATTCTCAATCTCAGACTGGTTCCTTGGGGTGATGCATACGCCAACAAATCGAACGACAGCACCGCTTTCTGTCAGCATAGGCCAGATGGATGTAAGTTGAATTTTCTGGAAGCATGCGCTATCGATGTTATGCATGATGTGCTTGAACAAAACTATGGCAATGAAACTATGATTAATCGAAGCCAAAGACCAATTCCAACTCAGGTACATAATCTCATCATCATCACCCTCGTTAAGCTCCTTATTCCCACTTATAATCCCAGCACCCACGGCAACCAAACCCGTCATCCTCAAAGCTTCCAAGTCATGCATGCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

143

Amino Acids

16.16

Weight (kDa)

6.57

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 8 - 84 9.5e-19 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
AciI CCGC 1 cut(s) 174
AcsI RAATTY 1 cut(s) 211
AfaI GTAC 1 cut(s) 318
AgsI TTSAA 2 cut(s) 211, 257
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
AluBI AGCT 2 cut(s) 349, 408
AluI AGCT 2 cut(s) 349, 408
Alw21I GWGCWC 1 cut(s) 50
AoxI GGCC 1 cut(s) 191
ApoI RAATTY 1 cut(s) 211
AseI ATTAAT 1 cut(s) 285
AspLEI GCGC 1 cut(s) 230
AsuHPI GGTGA 3 cut(s) 100, 152, 328
Bbv12I GWGCWC 1 cut(s) 50
BccI CCATC 1 cut(s) 191
BceAI ACGGC 1 cut(s) 397
BfaI CTAG 1 cut(s) 60
BmiI GGNNCC 1 cut(s) 132
BmsI GCATC 1 cut(s) 133
Bsa29I ATCGAT 1 cut(s) 234
BsaBI GATNNNNATC 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 134, 379
Bse1I ACTGG 1 cut(s) 132
Bse3DI GCAATG 1 cut(s) 277
Bse8I GATNNNNATC 1 cut(s) 99
BseCI ATCGAT 1 cut(s) 234
BseDI CCNNGG 2 cut(s) 134, 379
BseGI GGATG 2 cut(s) 206, 397
BseJI GATNNNNATC 1 cut(s) 99
BseMI GCAATG 1 cut(s) 277
BseMII CTCAG 2 cut(s) 136, 326
BseNI ACTGG 1 cut(s) 132
BseYI CCCAGC 1 cut(s) 371
BshFI GGCC 1 cut(s) 193
BshVI ATCGAT 1 cut(s) 234
BsiHKAI GWGCWC 1 cut(s) 50
BsnI GGCC 1 cut(s) 193
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 1 cut(s) 174
BspANI GGCC 1 cut(s) 193
BspCNI CTCAG 2 cut(s) 135, 325
BspDI ATCGAT 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 132
BsrDI GCAATG 1 cut(s) 277
BsrI ACTGG 1 cut(s) 132
BssECI CCNNGG 2 cut(s) 134, 379
BssMI GATC 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 134
BstAPI GCANNNNNTGC 1 cut(s) 250
BstC8I GCNNGC 2 cut(s) 226, 423
BstDEI CTNAG 3 cut(s) 84, 122, 312
BstDSI CCRYGG 1 cut(s) 379
BstF5I GGATG 2 cut(s) 206, 397
BstHHI GCGC 1 cut(s) 230
BstKTI GATC 1 cut(s) 103
BstMBI GATC 1 cut(s) 100
BstMWI GCNNNNNNNGC 2 cut(s) 250, 381
BstNSI RCATGY 2 cut(s) 228, 425
Bsu15I ATCGAT 1 cut(s) 234
BsuRI GGCC 1 cut(s) 193
BsuTUI ATCGAT 1 cut(s) 234
BtgI CCRYGG 1 cut(s) 379
BtsCI GGATG 2 cut(s) 206, 397
Cac8I GCNNGC 2 cut(s) 226, 423
CfoI GCGC 1 cut(s) 230
ClaI ATCGAT 1 cut(s) 234
Csp6I GTAC 1 cut(s) 317
CviAII CATG 4 cut(s) 225, 245, 418, 422
CviJI RGCY 5 cut(s) 5, 193, 294, 349, 408
CviKI_1 RGCY 5 cut(s) 5, 193, 294, 349, 408
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 3 cut(s) 84, 122, 312
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 134
EcoT22I ATGCAT 3 cut(s) 148, 246, 423
ErhI CCWWGG 1 cut(s) 134
FaeI CATG 4 cut(s) 228, 248, 421, 425
FatI CATG 4 cut(s) 224, 244, 417, 421
FokI GGATG 2 cut(s) 213, 384
FspBI CTAG 1 cut(s) 60
GlaI GCGC 1 cut(s) 229
GsaI CCCAGC 1 cut(s) 375
HaeIII GGCC 1 cut(s) 193
HhaI GCGC 1 cut(s) 230
Hin1II CATG 4 cut(s) 228, 248, 421, 425
Hin6I GCGC 1 cut(s) 228
HinP1I GCGC 1 cut(s) 228
HindIII AAGCTT 1 cut(s) 406
HinfI GANTC 2 cut(s) 38, 76
HphI GGTGA 3 cut(s) 100, 152, 328
Hpy188I TCNGA 2 cut(s) 12, 125
Hpy188III TCNNGA 2 cut(s) 73, 218
HpyCH4V TGCA 3 cut(s) 146, 244, 421
HpyF10VI GCNNNNNNNGC 2 cut(s) 250, 381
HpyF3I CTNAG 3 cut(s) 84, 122, 312
Hsp92II CATG 4 cut(s) 228, 248, 421, 425
HspAI GCGC 1 cut(s) 228
Kzo9I GATC 1 cut(s) 100
LmnI GCTCC 1 cut(s) 354
LpnPI CCDG 5 cut(s) 113, 203, 207, 299, 385
LweI GCATC 1 cut(s) 133
MaeI CTAG 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 16
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 50
MluCI AATT 2 cut(s) 211, 303
MlyI GAGTC 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 2 cut(s) 350, 411
Mph1103I ATGCAT 3 cut(s) 148, 246, 423
MseI TTAA 2 cut(s) 285, 345
MwoI GCNNNNNNNGC 2 cut(s) 250, 381
NdeII GATC 1 cut(s) 100
NlaIII CATG 4 cut(s) 228, 248, 421, 425
NlaIV GGNNCC 1 cut(s) 132
NsiI ATGCAT 3 cut(s) 148, 246, 423
NspI RCATGY 2 cut(s) 228, 425
PaeI GCATGC 2 cut(s) 228, 425
PfeI GAWTC 1 cut(s) 76
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
PshBI ATTAAT 1 cut(s) 285
PsiI TTATAA 1 cut(s) 366
PspFI CCCAGC 1 cut(s) 371
PspN4I GGNNCC 1 cut(s) 132
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
SaqAI TTAA 2 cut(s) 285, 345
Sau3AI GATC 1 cut(s) 100
SchI GAGTC 1 cut(s) 32
SduI GDGCHC 1 cut(s) 50
SetI ASST 3 cut(s) 318, 351, 410
SfaNI GCATC 1 cut(s) 133
SphI GCATGC 2 cut(s) 228, 425
Sse9I AATT 2 cut(s) 211, 303
SsiI CCGC 1 cut(s) 174
SspMI CTAG 1 cut(s) 60
StyI CCWWGG 1 cut(s) 134
TaqI TCGA 4 cut(s) 93, 161, 234, 289
TasI AATT 2 cut(s) 211, 303
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 2 cut(s) 285, 345
Tru9I TTAA 2 cut(s) 285, 345
TspDTI ATGAA 2 cut(s) 55, 288
VspI ATTAAT 1 cut(s) 285
XapI RAATTY 1 cut(s) 211
XceI RCATGY 2 cut(s) 228, 425
XspI CTAG 1 cut(s) 60
Zsp2I ATGCAT 3 cut(s) 148, 246, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.