Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005209.1

Orthogroup ID

OG0003951

Physical Location & Seq

Genomic Coordinates Reverse (-)

22050 .. 23086

Gene Structure 1037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005209.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atggcctctgctctattcttcacttgtctcattacctgttcagtgttcttgcttactattccttgttatgttgctaatcagaaagttactctctcactttactatgactctttgagcacatcttgtgctaccttcatcgtcaagaatcttgctaagattttcgatgatgatctcatcaccattctcaatctcagattggttccttggggtgatgcatacgccaacaaatcgaacaacagcaccgctttctgtcagcataggccagatgggtgtaagttgaattttttggaagcatgcgctatcgatgttatgcatgatgtgaacaagcactttgctttgatttactgcatagaatttttggccatagagggaaggcacaaggagtgggaaacttgcttcagttcattgggactgcctaagaaacccactttagattgctacaacagttcaaatgcaacaaagcttgaacaaaactatggcaatgaaaccatgcacctcaatccacctctaaagtttgtaccatggctggttctgaatgatcaacctattggaaatgactatgaaaattttgctggctatgtgtgcaaggcttacaaaggtaacattgtgcccatggcatgtcagtctgtacatttgaagcagaagacagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT

Protein Analysis

217

Amino Acids

24.48

Weight (kDa)

6.29

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003951)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g03550 FvH4_6g03570 FvH4_6g10810
malus_domestica	MD04G1164100.v1.1 MD12G1177700.v1.1
prunus_persica	Prupe.6G283200_v2.0.a1 Prupe.6G283200_v2.0.a1
pyrus_communis	pycom12g16810
rosa_chinensis	RchiOBHm_Chr3g0461901 RchiOBHm_Chr3g0461911 RchiOBHm_Chr3g0461951 RchiOBHm_Chr3g0462021 RchiOBHm_Chr7g0217871 RchiOBHm_Chr7g0217891 RchiOBHm_Chr7g0217931
rosa_laevigata	RLG00000024885 RLG00000024890
rosa_multiflora	Rmu_sc0005209.1_g000006
rosa_roxburghii	Rroxscaffold_6G00417850
rosa_rugosa	Rorug03G0054500 Rorug07G0172100
rosa_samantha	Rh3AG112500 Rh3AG112700 Rh3CG118200 Rh3DG117300 Rh3DG356700 Rh7AG313300 Rh7AG313700 Rh7BG304300 Rh7BG304400 Rh7DG312200
rosa_wichuraiana	Rw0G007870 Rw0G017260 Rw7G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	243
AcoI	YGGCCR	1 cut(s)	360
AcsI	RAATTY	3 cut(s)	280, 353, 565
AcuI	CTGAAG	1 cut(s)	382
AfaI	GTAC	2 cut(s)	519, 630
AgsI	TTSAA	4 cut(s)	280, 450, 467, 637
AluBI	AGCT	1 cut(s)	463
AluI	AGCT	1 cut(s)	463
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	32
AoxI	GGCC	3 cut(s)	3, 260, 360
ApoI	RAATTY	3 cut(s)	280, 353, 565
AspLEI	GCGC	1 cut(s)	299
AsuHPI	GGTGA	2 cut(s)	169, 221
BaeGI	GKGCMC	1 cut(s)	612
BalI	TGGCCA	1 cut(s)	362
BbsI	GAAGAC	1 cut(s)	650
Bbv12I	GWGCWC	1 cut(s)	119
BccI	CCATC	1 cut(s)	260
BclI	TGATCA	1 cut(s)	538
BcoDI	GTCTC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	201
BmsI	GCATC	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	650
Bsa29I	ATCGAT	1 cut(s)	303
BsaBI	GATNNNNATC	1 cut(s)	168
BsaJI	CCNNGG	3 cut(s)	203, 521, 612
Bse3DI	GCAATG	1 cut(s)	487
Bse8I	GATNNNNATC	1 cut(s)	168
BseCI	ATCGAT	1 cut(s)	303
BseDI	CCNNGG	3 cut(s)	203, 521, 612
BseJI	GATNNNNATC	1 cut(s)	168
BseMI	GCAATG	1 cut(s)	487
BseMII	CTCAG	1 cut(s)	205
BseSI	GKGCMC	1 cut(s)	612
BshFI	GGCC	3 cut(s)	5, 262, 362
BshVI	ATCGAT	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	423
BsmAI	GTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	423
BsnI	GGCC	3 cut(s)	5, 262, 362
Bsp1286I	GDGCHC	2 cut(s)	119, 612
Bsp1407I	TGTACA	1 cut(s)	628
Bsp143I	GATC	2 cut(s)	169, 538
Bsp19I	CCATGG	2 cut(s)	521, 612
BspACI	CCGC	1 cut(s)	243
BspANI	GGCC	3 cut(s)	5, 262, 362
BspCNI	CTCAG	1 cut(s)	204
BspDI	ATCGAT	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	487
BsrGI	TGTACA	1 cut(s)	628
BssECI	CCNNGG	3 cut(s)	203, 521, 612
BssMI	GATC	2 cut(s)	169, 538
BssT1I	CCWWGG	3 cut(s)	203, 521, 612
Bst4CI	ACNGT	1 cut(s)	446
BstAUI	TGTACA	1 cut(s)	628
BstC8I	GCNNGC	2 cut(s)	295, 574
BstDEI	CTNAG	3 cut(s)	153, 191, 417
BstDSI	CCRYGG	2 cut(s)	521, 612
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	2 cut(s)	172, 541
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	2 cut(s)	169, 538
BstMWI	GCNNNNNNNGC	1 cut(s)	582
BstNSI	RCATGY	2 cut(s)	297, 621
BstSLI	GKGCMC	1 cut(s)	612
BstV2I	GAAGAC	1 cut(s)	650
Bsu15I	ATCGAT	1 cut(s)	303
BsuRI	GGCC	3 cut(s)	5, 262, 362
BsuTUI	ATCGAT	1 cut(s)	303
BtgI	CCRYGG	2 cut(s)	521, 612
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	2 cut(s)	295, 574
CfoI	GCGC	1 cut(s)	299
ClaI	ATCGAT	1 cut(s)	303
Csp6I	GTAC	2 cut(s)	518, 629
CviAII	CATG	6 cut(s)	294, 314, 490, 522, 613, 618
CviJI	RGCY	7 cut(s)	5, 262, 362, 463, 526, 576, 590
CviKI_1	RGCY	7 cut(s)	5, 262, 362, 463, 526, 576, 590
CviQI	GTAC	2 cut(s)	518, 629
DdeI	CTNAG	3 cut(s)	153, 191, 417
DpnI	GATC	2 cut(s)	171, 540
DpnII	GATC	2 cut(s)	169, 538
EaeI	YGGCCR	1 cut(s)	360
Eco130I	CCWWGG	3 cut(s)	203, 521, 612
Eco57I	CTGAAG	1 cut(s)	382
EcoT14I	CCWWGG	3 cut(s)	203, 521, 612
EcoT22I	ATGCAT	2 cut(s)	217, 315
ErhI	CCWWGG	3 cut(s)	203, 521, 612
FaeI	CATG	6 cut(s)	297, 317, 493, 525, 616, 621
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	6 cut(s)	293, 313, 489, 521, 612, 617
FbaI	TGATCA	1 cut(s)	538
GlaI	GCGC	1 cut(s)	298
HaeIII	GGCC	3 cut(s)	5, 262, 362
HhaI	GCGC	1 cut(s)	299
Hin1II	CATG	6 cut(s)	297, 317, 493, 525, 616, 621
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	2 cut(s)	107, 145
HphI	GGTGA	2 cut(s)	169, 221
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	3 cut(s)	81, 194, 534
Hpy188III	TCNNGA	1 cut(s)	142
Hpy8I	GTNNAC	1 cut(s)	322
HpyAV	CCTTC	2 cut(s)	142, 366
HpyCH4III	ACNGT	1 cut(s)	446
HpyCH4V	TGCA	6 cut(s)	215, 313, 348, 455, 493, 585
HpyF10VI	GCNNNNNNNGC	1 cut(s)	582
HpyF3I	CTNAG	3 cut(s)	153, 191, 417
Hsp92II	CATG	6 cut(s)	297, 317, 493, 525, 616, 621
HspAI	GCGC	1 cut(s)	297
Ksp22I	TGATCA	1 cut(s)	538
Kzo9I	GATC	2 cut(s)	169, 538
LpnPI	CCDG	4 cut(s)	49, 276, 512, 558
LweI	GCATC	1 cut(s)	202
MaeIII	GTNAC	2 cut(s)	85, 599
MalI	GATC	2 cut(s)	171, 540
MboI	GATC	2 cut(s)	169, 538
MboII	GAAGA	1 cut(s)	10
MhlI	GDGCHC	2 cut(s)	119, 612
MlsI	TGGCCA	1 cut(s)	362
MluCI	AATT	3 cut(s)	280, 353, 565
MluNI	TGGCCA	1 cut(s)	362
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	4 cut(s)	16, 361, 506, 516
Mox20I	TGGCCA	1 cut(s)	362
Mph1103I	ATGCAT	2 cut(s)	217, 315
MscI	TGGCCA	1 cut(s)	362
Msp20I	TGGCCA	1 cut(s)	362
MwoI	GCNNNNNNNGC	1 cut(s)	582
NcoI	CCATGG	2 cut(s)	521, 612
NdeII	GATC	2 cut(s)	169, 538
NlaIII	CATG	6 cut(s)	297, 317, 493, 525, 616, 621
NlaIV	GGNNCC	1 cut(s)	201
NsiI	ATGCAT	2 cut(s)	217, 315
NspI	RCATGY	2 cut(s)	297, 621
PaeI	GCATGC	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	201
RsaI	GTAC	2 cut(s)	519, 630
RsaNI	GTAC	2 cut(s)	518, 629
Sau3AI	GATC	2 cut(s)	169, 538
SchI	GAGTC	1 cut(s)	101
SduI	GDGCHC	2 cut(s)	119, 612
SetI	ASST	7 cut(s)	38, 134, 465, 498, 508, 547, 601
SfaNI	GCATC	1 cut(s)	202
SphI	GCATGC	1 cut(s)	297
Sse9I	AATT	3 cut(s)	280, 353, 565
SsiI	CCGC	1 cut(s)	243
StyI	CCWWGG	3 cut(s)	203, 521, 612
TaaI	ACNGT	1 cut(s)	446
TaqI	TCGA	3 cut(s)	162, 230, 303
TasI	AATT	3 cut(s)	280, 353, 565
TatI	WGTACW	1 cut(s)	628
TfiI	GAWTC	1 cut(s)	145
TscAI	CASTG	1 cut(s)	48
TspDTI	ATGAA	4 cut(s)	124, 393, 498, 576
TspRI	CASTG	1 cut(s)	48
XapI	RAATTY	3 cut(s)	280, 353, 565
XceI	RCATGY	2 cut(s)	297, 621
Zsp2I	ATGCAT	2 cut(s)	217, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.