RchiOBHm_Chr7g0217931
ERF Family

Gamma-interferon-inducible lysosomal thiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0003951
Physical Location & Seq
Forward (+)
35846591 .. 35847606
1016 bp
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UTR
Exon/CDS
Intron
PRQ19506

Sequence Viewer

Length: 690 bp
ATGGGAGGTGTTACGGCGTTGTTTTTGAGAAGCTATATCTGGATATCTGAGGATGAAGTCTTTTTCTCCAGGATGAAATCTTTGAGCACATCTTGTGCTTCCTTCATCGTCAAGAATCTTGCTAAGATTTTCGATGATGATCTCATCACCATTCTCAATCTCAGACTGCATAGGCCAGATGGGTGTAAGTTGAATTTTCTGGAAGCATGCGCTATCGATGTTATGCATGATGTGAACAAGCACTTTGCTTTGATTTACTGCATAGAATTTTTGGGCATAAAGGGAAGGCACAAGGAGTGGGAAACTTGCTTCAGTTCATTGGGACTGCCTAAGAAACCCACTTTGGATTGCTACAACAGTTCAAAAAATGCAACGAAGCTTGAACAAAACTATGGCAATGAAACCATGCACCTCAATCCACCTCTAAAGTTTGTACCATGGCTGGTTCTGAATGATCAACCTATTGGAAATGTTGGTCCTCTCTCTCTCTCTCTCTCTCTCAGATCCCTCTTTTCTCCATCTCCCGTTTTTTCTCACACGCGTTCGATCTCTCTCTTTGAATCAAAATTAACTTTTGTCTTAATGAAATGCAGGACTGAAAATTTTGCTGGCTATGTGTGCAAGGCTTACAAAGGTAACATTGTGCCCAAGGCATGTCAGTCTGTACATTTGAAGCAGAAGACAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 map04612
Pfam Domains
Protein Families
GILT

Protein Analysis

229

Amino Acids

25.92

Weight (kDa)

8.92

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 57 - 106 1.1e-07 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 541
AclWI GGATC 1 cut(s) 498
AcsI RAATTY 3 cut(s) 193, 266, 601
AcuI CTGAAG 1 cut(s) 295
AfaI GTAC 2 cut(s) 435, 666
AflIII ACRYGT 1 cut(s) 539
AgsI TTSAA 5 cut(s) 193, 363, 383, 560, 673
AjnI CCWGG 1 cut(s) 68
AjuI GAANNNNNNNTTGG 2 cut(s) 326, 358
AluBI AGCT 2 cut(s) 33, 379
AluI AGCT 2 cut(s) 33, 379
Alw21I GWGCWC 1 cut(s) 89
AlwI GGATC 1 cut(s) 498
AoxI GGCC 1 cut(s) 173
ApoI RAATTY 3 cut(s) 193, 266, 601
AspLEI GCGC 1 cut(s) 212
AspS9I GGNCC 1 cut(s) 476
AsuHPI GGTGA 1 cut(s) 139
AvaII GGWCC 1 cut(s) 476
BaeGI GKGCMC 1 cut(s) 648
BbsI GAAGAC 1 cut(s) 686
Bbv12I GWGCWC 1 cut(s) 89
BccI CCATC 2 cut(s) 173, 526
BceAI ACGGC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 70
BclI TGATCA 1 cut(s) 454
Bme1390I CCNGG 1 cut(s) 70
Bme18I GGWCC 1 cut(s) 476
BmgT120I GGNCC 1 cut(s) 476
BmrFI CCNGG 1 cut(s) 70
BpiI GAAGAC 1 cut(s) 686
BpmI CTGGAG 1 cut(s) 52
Bsa29I ATCGAT 1 cut(s) 216
BsaBI GATNNNNATC 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 437, 648
Bse3DI GCAATG 1 cut(s) 403
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 1 cut(s) 70
BseCI ATCGAT 1 cut(s) 216
BseDI CCNNGG 2 cut(s) 437, 648
BseGI GGATG 2 cut(s) 58, 78
BseJI GATNNNNATC 1 cut(s) 138
BseMI GCAATG 1 cut(s) 403
BseMII CTCAG 3 cut(s) 39, 175, 514
BseSI GKGCMC 1 cut(s) 648
Bsh1236I CGCG 1 cut(s) 541
BshFI GGCC 1 cut(s) 175
BshVI ATCGAT 1 cut(s) 216
BsiHKAI GWGCWC 1 cut(s) 89
BslFI GGGAC 1 cut(s) 336
BsmFI GGGAC 1 cut(s) 336
BsnI GGCC 1 cut(s) 175
Bsp1286I GDGCHC 2 cut(s) 89, 648
Bsp1407I TGTACA 1 cut(s) 664
Bsp143I GATC 4 cut(s) 139, 454, 503, 546
Bsp19I CCATGG 1 cut(s) 437
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 3 cut(s) 40, 174, 513
BspDI ATCGAT 1 cut(s) 216
BspFNI CGCG 1 cut(s) 541
BspPI GGATC 1 cut(s) 498
BsrDI GCAATG 1 cut(s) 403
BsrGI TGTACA 1 cut(s) 664
BssECI CCNNGG 2 cut(s) 437, 648
BssMI GATC 4 cut(s) 139, 454, 503, 546
BssT1I CCWWGG 2 cut(s) 437, 648
Bst2UI CCWGG 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 359
BstAUI TGTACA 1 cut(s) 664
BstC8I GCNNGC 2 cut(s) 208, 610
BstDEI CTNAG 5 cut(s) 48, 123, 161, 330, 500
BstDSI CCRYGG 1 cut(s) 437
BstF5I GGATG 2 cut(s) 58, 78
BstFNI CGCG 1 cut(s) 541
BstHHI GCGC 1 cut(s) 212
BstKTI GATC 4 cut(s) 142, 457, 506, 549
BstMBI GATC 4 cut(s) 139, 454, 503, 546
BstMWI GCNNNNNNNGC 1 cut(s) 618
BstNI CCWGG 1 cut(s) 70
BstNSI RCATGY 2 cut(s) 210, 657
BstSCI CCNGG 1 cut(s) 68
BstSLI GKGCMC 1 cut(s) 648
BstUI CGCG 1 cut(s) 541
BstV2I GAAGAC 1 cut(s) 686
BstX2I RGATCY 1 cut(s) 503
BstYI RGATCY 1 cut(s) 503
Bsu15I ATCGAT 1 cut(s) 216
BsuRI GGCC 1 cut(s) 175
BsuTUI ATCGAT 1 cut(s) 216
BtgI CCRYGG 1 cut(s) 437
BtsCI GGATG 2 cut(s) 58, 78
Cac8I GCNNGC 2 cut(s) 208, 610
CfoI GCGC 1 cut(s) 212
Cfr13I GGNCC 1 cut(s) 476
ClaI ATCGAT 1 cut(s) 216
Csp6I GTAC 2 cut(s) 434, 665
CviAII CATG 5 cut(s) 207, 227, 406, 438, 654
CviJI RGCY 6 cut(s) 33, 175, 379, 442, 612, 626
CviKI_1 RGCY 6 cut(s) 33, 175, 379, 442, 612, 626
CviQI GTAC 2 cut(s) 434, 665
DdeI CTNAG 5 cut(s) 48, 123, 161, 330, 500
DpnI GATC 4 cut(s) 141, 456, 505, 548
DpnII GATC 4 cut(s) 139, 454, 503, 546
Eco130I CCWWGG 2 cut(s) 437, 648
Eco32I GATATC 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 476
Eco57I CTGAAG 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 68
EcoRV GATATC 1 cut(s) 45
EcoT14I CCWWGG 2 cut(s) 437, 648
EcoT22I ATGCAT 1 cut(s) 228
ErhI CCWWGG 2 cut(s) 437, 648
FaeI CATG 5 cut(s) 210, 230, 409, 441, 657
FaqI GGGAC 1 cut(s) 336
FatI CATG 5 cut(s) 206, 226, 405, 437, 653
FbaI TGATCA 1 cut(s) 454
FokI GGATG 2 cut(s) 65, 85
GlaI GCGC 1 cut(s) 211
GsuI CTGGAG 1 cut(s) 52
HaeIII GGCC 1 cut(s) 175
HhaI GCGC 1 cut(s) 212
Hin1II CATG 5 cut(s) 210, 230, 409, 441, 657
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 2 cut(s) 115, 560
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 4 cut(s) 49, 164, 450, 503
Hpy188III TCNNGA 3 cut(s) 40, 112, 200
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 2 cut(s) 112, 279
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4V TGCA 7 cut(s) 169, 226, 261, 371, 409, 591, 621
HpyF10VI GCNNNNNNNGC 1 cut(s) 618
HpyF3I CTNAG 5 cut(s) 48, 123, 161, 330, 500
Hsp92II CATG 5 cut(s) 210, 230, 409, 441, 657
HspAI GCGC 1 cut(s) 210
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 4 cut(s) 139, 454, 503, 546
LpnPI CCDG 8 cut(s) 25, 55, 82, 185, 189, 428, 577, 594
MaeIII GTNAC 2 cut(s) 10, 635
MalI GATC 4 cut(s) 141, 456, 505, 548
MboI GATC 4 cut(s) 139, 454, 503, 546
MflI RGATCY 1 cut(s) 503
MhlI GDGCHC 2 cut(s) 89, 648
MluCI AATT 4 cut(s) 193, 266, 566, 601
MluI ACGCGT 1 cut(s) 539
MnlI CCTC 5 cut(s) 43, 422, 432, 489, 518
Mph1103I ATGCAT 1 cut(s) 228
MseI TTAA 2 cut(s) 569, 581
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
MvnI CGCG 1 cut(s) 541
MwoI GCNNNNNNNGC 1 cut(s) 618
NcoI CCATGG 1 cut(s) 437
NdeII GATC 4 cut(s) 139, 454, 503, 546
NlaIII CATG 5 cut(s) 210, 230, 409, 441, 657
NsiI ATGCAT 1 cut(s) 228
NspI RCATGY 2 cut(s) 210, 657
PaeI GCATGC 1 cut(s) 210
PfeI GAWTC 2 cut(s) 115, 560
PfoI TCCNGGA 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PspPI GGNCC 1 cut(s) 476
PsuI RGATCY 1 cut(s) 503
RsaI GTAC 2 cut(s) 435, 666
RsaNI GTAC 2 cut(s) 434, 665
SaqAI TTAA 2 cut(s) 569, 581
Sau3AI GATC 4 cut(s) 139, 454, 503, 546
Sau96I GGNCC 1 cut(s) 476
ScrFI CCNGG 1 cut(s) 70
SduI GDGCHC 2 cut(s) 89, 648
SetI ASST 7 cut(s) 10, 35, 381, 414, 424, 463, 637
SinI GGWCC 1 cut(s) 476
SphI GCATGC 1 cut(s) 210
Sse9I AATT 4 cut(s) 193, 266, 566, 601
StyD4I CCNGG 1 cut(s) 68
StyI CCWWGG 2 cut(s) 437, 648
TaaI ACNGT 1 cut(s) 359
TaqI TCGA 3 cut(s) 132, 216, 545
TasI AATT 4 cut(s) 193, 266, 566, 601
TatI WGTACW 1 cut(s) 664
TfiI GAWTC 2 cut(s) 115, 560
Tru1I TTAA 2 cut(s) 569, 581
Tru9I TTAA 2 cut(s) 569, 581
TspDTI ATGAA 6 cut(s) 69, 89, 94, 306, 414, 599
VpaK11BI GGWCC 1 cut(s) 476
XapI RAATTY 3 cut(s) 193, 266, 601
XceI RCATGY 2 cut(s) 210, 657
Zsp2I ATGCAT 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.