Rh3AG112500
ERF Family

Gamma-interferon-inducible lysosomal thiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0003951
Physical Location & Seq
Forward (+)
9503229 .. 9516404
13176 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG112500.1

Sequence Viewer

Length: 1080 bp
ATGACAGAGAGCGGCGGCGGTGTGGTGGAGAAGGGCGGCGAGGGTATTTTGGGAATTGAAGACGAAGAGCCGACTCTGACTCTGGCCGTGATGTTGAAGCGGCTGCGTCGGAAAAAGAAGATGGGGAAGGGTATTATGGAGGGTTTAGAGCGTAAAGATTTGATCTTTGGTGATCGAATTGAAGGGCAAAAGGGGAAAGGCGAAGAGGGAAAGATTGTTCAGAGGAATGGTGTGGGAACTAGGAGGCTGAGGTCTTCTTCTGCAAAGTCAAACACCAATGGCCGTGTTCTGGGTATTGACCTCAGCAGTGAGTCAATCTCAGGTGGCATTGACAATTCCAGCAGTCTCTTCCATCTTCAAAATCTTCAAAGCCTCAATTTGGCGGACAACGAACTCGGCAACGGCTCTCAATCAATTCCATCTGCAGTCGGGCAGCTCATGAATTTGAGAATCGGCATTTTACATTCTTCCATTGCGTTGAGAGGCTCACATTGCAGAACAAGCACAGTAAATGGGGATTTTGAAATGTCGAAGTTGGGGACTGTACCTATCGATTGCTACAACAGTGGATATGGCAATCAGATTTTCGATGATGATCTCATCACCATTCTCAATCTCAGACTGGTTCCTTGGGGTGATGCATACGCCAACAAATCGAACAACAGCACCGCTTTCTGTCAGCATAGGCCAGATGGGTGTAAGTTGAATTCTCTGGAAGCATGCGCTATCGATGTTATGCATGATGTGAATAAGCACTTTTCTTTGATTTACTGCATAGAATTTCTAGCCATAGAGGGAAGGCACAAGGAGTGGGAAACTTGCTTCAGTTCATTGGGACTGCCTAAGAAACCCACTTTGAATTGCTACAACAGTTCAAATGCAACAAAGCTTGAACAAAACTATGGCAATGAAACCATGCACCTCAATCCACCTCTAAAGTTTGTACCATGGCTGGTTCTGAACAATCAACCTATTGGAAATGACTATGAAAATTTTGCTGGCCATGTGTGCAAGGCTTACAAAGGTAACATTGTGCCCATGGCATGTCAATCTGTGCATTTGAAGCAGAAGACAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 map04612
Pfam Domains
Protein Families
GILT

Protein Analysis

359

Amino Acids

39.37

Weight (kDa)

7.57

Isoelectric Point (pI)

45.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 195 - 277 3.4e-17 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 12
AciI CCGC 7 cut(s) 12, 15, 18, 36, 100, 383, 669
AcoI YGGCCR 3 cut(s) 84, 280, 1000
AcsI RAATTY 4 cut(s) 442, 706, 779, 991
AcuI CTGAAG 1 cut(s) 808
AfaI GTAC 2 cut(s) 546, 945
AfiI CCNNNNNNNGG 2 cut(s) 289, 379
AloI GAACNNNNNNTCC 2 cut(s) 201, 233
AluBI AGCT 2 cut(s) 436, 889
AluI AGCT 2 cut(s) 436, 889
Alw26I GTCTC 1 cut(s) 350
AoxI GGCC 4 cut(s) 84, 280, 686, 1000
ApeKI GCWGC 2 cut(s) 103, 433
ApoI RAATTY 4 cut(s) 442, 706, 779, 991
AspLEI GCGC 1 cut(s) 725
AsuHPI GGTGA 3 cut(s) 182, 595, 647
BaeGI GKGCMC 1 cut(s) 1038
BalI TGGCCA 1 cut(s) 1002
BbsI GAAGAC 3 cut(s) 66, 246, 1076
BbvCI CCTCAGC 2 cut(s) 248, 302
BbvI GCAGC 2 cut(s) 90, 445
BccI CCATC 4 cut(s) 115, 360, 427, 686
BceAI ACGGC 3 cut(s) 71, 267, 418
BcoDI GTCTC 1 cut(s) 350
BfaI CTAG 2 cut(s) 240, 785
BfmI CTRYAG 1 cut(s) 423
BisI GCNGC 6 cut(s) 13, 16, 37, 101, 104, 434
BlsI GCNGC 6 cut(s) 14, 17, 38, 102, 105, 435
BmiI GGNNCC 1 cut(s) 627
BmsI GCATC 1 cut(s) 628
BpiI GAAGAC 3 cut(s) 66, 246, 1076
BplI GAGNNNNNCTC 2 cut(s) 302, 334
Bpu10I CCTNAGC 2 cut(s) 248, 302
Bsa29I ATCGAT 2 cut(s) 552, 729
BsaBI GATNNNNATC 1 cut(s) 594
BsaJI CCNNGG 3 cut(s) 629, 947, 1038
Bsc4I CCNNNNNNNGG 2 cut(s) 289, 379
Bse1I ACTGG 1 cut(s) 627
Bse3DI GCAATG 3 cut(s) 471, 490, 913
Bse8I GATNNNNATC 1 cut(s) 594
BseCI ATCGAT 2 cut(s) 552, 729
BseDI CCNNGG 3 cut(s) 629, 947, 1038
BseJI GATNNNNATC 1 cut(s) 594
BseLI CCNNNNNNNGG 2 cut(s) 289, 379
BseMI GCAATG 3 cut(s) 471, 490, 913
BseMII CTCAG 4 cut(s) 239, 316, 333, 631
BseNI ACTGG 1 cut(s) 627
BseSI GKGCMC 1 cut(s) 1038
BseXI GCAGC 2 cut(s) 90, 445
BshFI GGCC 4 cut(s) 86, 282, 688, 1002
BshVI ATCGAT 2 cut(s) 552, 729
BslFI GGGAC 2 cut(s) 553, 849
BslI CCNNNNNNNGG 2 cut(s) 289, 379
BsmAI GTCTC 1 cut(s) 350
BsmFI GGGAC 2 cut(s) 553, 849
BsnI GGCC 4 cut(s) 86, 282, 688, 1002
Bsp1286I GDGCHC 1 cut(s) 1038
Bsp143I GATC 3 cut(s) 162, 172, 595
Bsp19I CCATGG 2 cut(s) 947, 1038
BspACI CCGC 7 cut(s) 12, 15, 18, 36, 100, 383, 669
BspANI GGCC 4 cut(s) 86, 282, 688, 1002
BspCNI CTCAG 4 cut(s) 240, 315, 332, 630
BspDI ATCGAT 2 cut(s) 552, 729
BspHI TCATGA 1 cut(s) 438
BspLI GGNNCC 1 cut(s) 627
BspMAI CTGCAG 1 cut(s) 427
BspQI GCTCTTC 1 cut(s) 60
BsrBI CCGCTC 1 cut(s) 12
BsrDI GCAATG 3 cut(s) 471, 490, 913
BsrI ACTGG 1 cut(s) 627
BssECI CCNNGG 3 cut(s) 629, 947, 1038
BssMI GATC 3 cut(s) 162, 172, 595
BssT1I CCWWGG 3 cut(s) 629, 947, 1038
Bst4CI ACNGT 4 cut(s) 508, 544, 566, 872
Bst6I CTCTTC 3 cut(s) 60, 198, 353
BstC8I GCNNGC 2 cut(s) 721, 1000
BstDEI CTNAG 5 cut(s) 248, 302, 319, 617, 843
BstDSI CCRYGG 2 cut(s) 947, 1038
BstHHI GCGC 1 cut(s) 725
BstKTI GATC 3 cut(s) 165, 175, 598
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 3 cut(s) 162, 172, 595
BstMWI GCNNNNNNNGC 4 cut(s) 492, 501, 1008, 1063
BstNSI RCATGY 2 cut(s) 723, 1047
BstSFI CTRYAG 1 cut(s) 423
BstSLI GKGCMC 1 cut(s) 1038
BstV1I GCAGC 2 cut(s) 90, 445
BstV2I GAAGAC 3 cut(s) 66, 246, 1076
Bsu15I ATCGAT 2 cut(s) 552, 729
BsuRI GGCC 4 cut(s) 86, 282, 688, 1002
BsuTUI ATCGAT 2 cut(s) 552, 729
BtgI CCRYGG 2 cut(s) 947, 1038
BtsI GCAGTG 1 cut(s) 313
BtsIMutI CAGTG 2 cut(s) 313, 571
Cac8I GCNNGC 2 cut(s) 721, 1000
CciI TCATGA 1 cut(s) 438
CfoI GCGC 1 cut(s) 725
ClaI ATCGAT 2 cut(s) 552, 729
CseI GACGC 1 cut(s) 95
Csp6I GTAC 2 cut(s) 545, 944
CviAII CATG 8 cut(s) 439, 720, 740, 916, 948, 1004, 1039, 1044
CviQI GTAC 2 cut(s) 545, 944
DdeI CTNAG 5 cut(s) 248, 302, 319, 617, 843
DpnI GATC 3 cut(s) 164, 174, 597
DpnII GATC 3 cut(s) 162, 172, 595
EaeI YGGCCR 3 cut(s) 84, 280, 1000
Eam1104I CTCTTC 3 cut(s) 60, 198, 353
EarI CTCTTC 3 cut(s) 60, 198, 353
EciI GGCGGA 1 cut(s) 398
Eco130I CCWWGG 3 cut(s) 629, 947, 1038
Eco57I CTGAAG 1 cut(s) 808
EcoRI GAATTC 1 cut(s) 706
EcoT14I CCWWGG 3 cut(s) 629, 947, 1038
EcoT22I ATGCAT 2 cut(s) 643, 741
ErhI CCWWGG 3 cut(s) 629, 947, 1038
FaeI CATG 8 cut(s) 442, 723, 743, 919, 951, 1007, 1042, 1047
FaqI GGGAC 2 cut(s) 553, 849
FatI CATG 8 cut(s) 438, 719, 739, 915, 947, 1003, 1038, 1043
Fnu4HI GCNGC 6 cut(s) 13, 16, 37, 101, 104, 434
Fsp4HI GCNGC 6 cut(s) 13, 16, 37, 101, 104, 434
FspBI CTAG 2 cut(s) 240, 785
GlaI GCGC 1 cut(s) 724
GluI GCNGC 6 cut(s) 13, 16, 37, 101, 104, 434
HaeIII GGCC 4 cut(s) 86, 282, 688, 1002
HgaI GACGC 1 cut(s) 95
HhaI GCGC 1 cut(s) 725
Hin1II CATG 8 cut(s) 442, 723, 743, 919, 951, 1007, 1042, 1047
Hin6I GCGC 1 cut(s) 723
HinP1I GCGC 1 cut(s) 723
HindIII AAGCTT 1 cut(s) 887
HinfI GANTC 4 cut(s) 73, 79, 311, 450
HphI GGTGA 3 cut(s) 182, 595, 647
Hpy188I TCNGA 6 cut(s) 78, 111, 222, 582, 620, 960
Hpy188III TCNNGA 2 cut(s) 439, 713
Hpy99I CGWCG 1 cut(s) 111
HpyAV CCTTC 4 cut(s) 25, 121, 176, 792
HpyCH4III ACNGT 4 cut(s) 508, 544, 566, 872
HpyF10VI GCNNNNNNNGC 4 cut(s) 492, 501, 1008, 1063
HpyF3I CTNAG 5 cut(s) 248, 302, 319, 617, 843
Hsp92II CATG 8 cut(s) 442, 723, 743, 919, 951, 1007, 1042, 1047
HspAI GCGC 1 cut(s) 723
Kzo9I GATC 3 cut(s) 162, 172, 595
LguI GCTCTTC 1 cut(s) 60
LpnPI CCDG 9 cut(s) 68, 275, 306, 352, 608, 698, 702, 938, 984
Lsp1109I GCAGC 2 cut(s) 90, 445
LweI GCATC 1 cut(s) 628
MaeI CTAG 2 cut(s) 240, 785
MaeIII GTNAC 1 cut(s) 1025
MalI GATC 3 cut(s) 164, 174, 597
MbiI CCGCTC 1 cut(s) 12
MboI GATC 3 cut(s) 162, 172, 595
MhlI GDGCHC 1 cut(s) 1038
MlsI TGGCCA 1 cut(s) 1002
MluNI TGGCCA 1 cut(s) 1002
MlyI GAGTC 3 cut(s) 67, 73, 320
MmeI TCCRAC 1 cut(s) 89
Mox20I TGGCCA 1 cut(s) 1002
Mph1103I ATGCAT 2 cut(s) 643, 741
MscI TGGCCA 1 cut(s) 1002
Msp20I TGGCCA 1 cut(s) 1002
MwoI GCNNNNNNNGC 4 cut(s) 492, 501, 1008, 1063
NcoI CCATGG 2 cut(s) 947, 1038
NdeII GATC 3 cut(s) 162, 172, 595
NlaIII CATG 8 cut(s) 442, 723, 743, 919, 951, 1007, 1042, 1047
NlaIV GGNNCC 1 cut(s) 627
NmeAIII GCCGAG 1 cut(s) 375
NsiI ATGCAT 2 cut(s) 643, 741
NspI RCATGY 2 cut(s) 723, 1047
PaeI GCATGC 1 cut(s) 723
PagI TCATGA 1 cut(s) 438
PciSI GCTCTTC 1 cut(s) 60
PfeI GAWTC 1 cut(s) 450
PkrI GCNGC 6 cut(s) 14, 17, 38, 102, 105, 435
PleI GAGTC 3 cut(s) 67, 73, 319
PpsI GAGTC 3 cut(s) 67, 73, 319
PspN4I GGNNCC 1 cut(s) 627
PstI CTGCAG 1 cut(s) 427
RsaI GTAC 2 cut(s) 546, 945
RsaNI GTAC 2 cut(s) 545, 944
SapI GCTCTTC 1 cut(s) 60
SatI GCNGC 6 cut(s) 13, 16, 37, 101, 104, 434
Sau3AI GATC 3 cut(s) 162, 172, 595
SchI GAGTC 3 cut(s) 67, 73, 320
SduI GDGCHC 1 cut(s) 1038
SfaNI GCATC 1 cut(s) 628
SfcI CTRYAG 1 cut(s) 423
SphI GCATGC 1 cut(s) 723
SsiI CCGC 7 cut(s) 12, 15, 18, 36, 100, 383, 669
SspMI CTAG 2 cut(s) 240, 785
StyI CCWWGG 3 cut(s) 629, 947, 1038
TaaI ACNGT 4 cut(s) 508, 544, 566, 872
TaqI TCGA 6 cut(s) 175, 530, 552, 588, 656, 729
TauI GCSGC 4 cut(s) 15, 18, 39, 103
TfiI GAWTC 1 cut(s) 450
TscAI CASTG 2 cut(s) 313, 571
TseI GCWGC 2 cut(s) 103, 433
TspDTI ATGAA 4 cut(s) 455, 819, 924, 1002
TspRI CASTG 2 cut(s) 313, 571
XapI RAATTY 4 cut(s) 442, 706, 779, 991
XceI RCATGY 2 cut(s) 723, 1047
XspI CTAG 2 cut(s) 240, 785
Zsp2I ATGCAT 2 cut(s) 643, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.