Rh3AG112700
ERF Family

Gamma-interferon-inducible lysosomal thiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0003951
Physical Location & Seq
Forward (+)
9547588 .. 9554554
6967 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG112700.1

Sequence Viewer

Length: 723 bp
ATGTCGAAGTTGGGGACTGTACCTATCGATTGCTACAACAGTGGATATGGCAATCAGATTGAAACAAAATATGCAAAGGAAACTGCTCAGCTTAATCCACCACATAGATTTGTGCCATGGCTGGTTGTCGATAATAAACCACTTGCAGAGAAAGTTACTCTCTCGCTTTACTATGACTCTTTGAGCACATCTTGTGCAACCTTCATTGTCAAGAATCTTGCTAAGATTTTCGATGATGATCTCATCACCATTCTCAATCTCAGACTGGTTCCTTGTGGTGATGCATACGCCAACAAATCGAACAATAGCACCGCTTTCTGTCAGCATAAGCCAGATGGGTGTAAGTTGGATTCTCTGGAAGCATGCGCTATCGATGTTATGCATGATGTGAACAAGCACTTTGCTTTGATTTACTGCATAGAATTTCTGGCCATAGAGGGAAGGCACAAGGAGTGGGAAACTTGCTTCAGTTCATTGGGACTGCCTAAGAAACCCACTTTGAATTGCTACAACAGTTCAAATGCAACAAAGCTTGAACAAAACTATGGCAATCAAACCATGCACCTCAATCCACCTCTAAAGTTTGTACCATGGCTGGTTCTGAACGATCAACCTATTGGAAATGACTATGAAAATTTTGCTGGCTATGTGTGCAAGGCTTACAAAGGTAACATTGTGCCCATGGCATGTCAATCTGTGCATTTGAAGCAGAAGACAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 map04612
Pfam Domains
Protein Families
GILT

Protein Analysis

240

Amino Acids

26.97

Weight (kDa)

6.64

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 54 - 158 2.1e-23 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 312
AcoI YGGCCR 1 cut(s) 429
AcsI RAATTY 2 cut(s) 422, 634
AcuI CTGAAG 1 cut(s) 451
AfaI GTAC 2 cut(s) 21, 588
AgsI TTSAA 5 cut(s) 62, 502, 519, 536, 706
AluBI AGCT 2 cut(s) 91, 532
AluI AGCT 2 cut(s) 91, 532
Alw21I GWGCWC 1 cut(s) 188
AoxI GGCC 1 cut(s) 429
ApoI RAATTY 2 cut(s) 422, 634
AspLEI GCGC 1 cut(s) 368
AsuHPI GGTGA 2 cut(s) 238, 290
BaeGI GKGCMC 1 cut(s) 681
BalI TGGCCA 1 cut(s) 431
BbsI GAAGAC 1 cut(s) 719
Bbv12I GWGCWC 1 cut(s) 188
BccI CCATC 1 cut(s) 329
BlpI GCTNAGC 1 cut(s) 87
BmiI GGNNCC 1 cut(s) 270
BmsI GCATC 1 cut(s) 271
BpiI GAAGAC 1 cut(s) 719
Bpu1102I GCTNAGC 1 cut(s) 87
Bsa29I ATCGAT 2 cut(s) 27, 372
BsaBI GATNNNNATC 1 cut(s) 237
BsaJI CCNNGG 3 cut(s) 116, 590, 681
Bse1I ACTGG 1 cut(s) 270
Bse8I GATNNNNATC 1 cut(s) 237
BseCI ATCGAT 2 cut(s) 27, 372
BseDI CCNNGG 3 cut(s) 116, 590, 681
BseJI GATNNNNATC 1 cut(s) 237
BseMII CTCAG 2 cut(s) 101, 274
BseNI ACTGG 1 cut(s) 270
BseSI GKGCMC 1 cut(s) 681
BshFI GGCC 1 cut(s) 431
BshVI ATCGAT 2 cut(s) 27, 372
BsiHKAI GWGCWC 1 cut(s) 188
BslFI GGGAC 2 cut(s) 28, 492
BsmFI GGGAC 2 cut(s) 28, 492
BsnI GGCC 1 cut(s) 431
Bsp1286I GDGCHC 2 cut(s) 188, 681
Bsp143I GATC 2 cut(s) 238, 607
Bsp1720I GCTNAGC 1 cut(s) 87
Bsp19I CCATGG 3 cut(s) 116, 590, 681
BspACI CCGC 1 cut(s) 312
BspANI GGCC 1 cut(s) 431
BspCNI CTCAG 2 cut(s) 100, 273
BspDI ATCGAT 2 cut(s) 27, 372
BspLI GGNNCC 1 cut(s) 270
BsrI ACTGG 1 cut(s) 270
BssECI CCNNGG 3 cut(s) 116, 590, 681
BssMI GATC 2 cut(s) 238, 607
BssT1I CCWWGG 3 cut(s) 116, 590, 681
Bst4CI ACNGT 3 cut(s) 19, 41, 515
BstC8I GCNNGC 2 cut(s) 364, 643
BstDEI CTNAG 4 cut(s) 87, 222, 260, 486
BstDSI CCRYGG 3 cut(s) 116, 590, 681
BstHHI GCGC 1 cut(s) 368
BstKTI GATC 2 cut(s) 241, 610
BstMBI GATC 2 cut(s) 238, 607
BstMWI GCNNNNNNNGC 2 cut(s) 651, 706
BstNSI RCATGY 2 cut(s) 366, 690
BstSLI GKGCMC 1 cut(s) 681
BstV2I GAAGAC 1 cut(s) 719
Bsu15I ATCGAT 2 cut(s) 27, 372
BsuRI GGCC 1 cut(s) 431
BsuTUI ATCGAT 2 cut(s) 27, 372
BtgI CCRYGG 3 cut(s) 116, 590, 681
BtsIMutI CAGTG 1 cut(s) 46
Cac8I GCNNGC 2 cut(s) 364, 643
CfoI GCGC 1 cut(s) 368
ClaI ATCGAT 2 cut(s) 27, 372
Csp6I GTAC 2 cut(s) 20, 587
CviAII CATG 7 cut(s) 117, 363, 383, 559, 591, 682, 687
CviJI RGCY 8 cut(s) 91, 121, 331, 431, 532, 595, 645, 659
CviKI_1 RGCY 8 cut(s) 91, 121, 331, 431, 532, 595, 645, 659
CviQI GTAC 2 cut(s) 20, 587
DdeI CTNAG 4 cut(s) 87, 222, 260, 486
DpnI GATC 2 cut(s) 240, 609
DpnII GATC 2 cut(s) 238, 607
EaeI YGGCCR 1 cut(s) 429
Eco130I CCWWGG 3 cut(s) 116, 590, 681
Eco57I CTGAAG 1 cut(s) 451
EcoT14I CCWWGG 3 cut(s) 116, 590, 681
EcoT22I ATGCAT 2 cut(s) 286, 384
ErhI CCWWGG 3 cut(s) 116, 590, 681
FaeI CATG 7 cut(s) 120, 366, 386, 562, 594, 685, 690
FaqI GGGAC 2 cut(s) 28, 492
FatI CATG 7 cut(s) 116, 362, 382, 558, 590, 681, 686
GlaI GCGC 1 cut(s) 367
HaeIII GGCC 1 cut(s) 431
HhaI GCGC 1 cut(s) 368
Hin1II CATG 7 cut(s) 120, 366, 386, 562, 594, 685, 690
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 3 cut(s) 176, 214, 350
HphI GGTGA 2 cut(s) 238, 290
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 3 cut(s) 57, 263, 603
Hpy188III TCNNGA 2 cut(s) 211, 356
Hpy8I GTNNAC 1 cut(s) 391
HpyAV CCTTC 2 cut(s) 211, 435
HpyCH4III ACNGT 3 cut(s) 19, 41, 515
HpyF10VI GCNNNNNNNGC 2 cut(s) 651, 706
HpyF3I CTNAG 4 cut(s) 87, 222, 260, 486
Hsp92II CATG 7 cut(s) 120, 366, 386, 562, 594, 685, 690
HspAI GCGC 1 cut(s) 366
Kzo9I GATC 2 cut(s) 238, 607
LpnPI CCDG 7 cut(s) 107, 251, 341, 345, 413, 581, 627
LweI GCATC 1 cut(s) 271
MaeIII GTNAC 2 cut(s) 154, 668
MalI GATC 2 cut(s) 240, 609
MboI GATC 2 cut(s) 238, 607
MhlI GDGCHC 2 cut(s) 188, 681
MlsI TGGCCA 1 cut(s) 431
MluCI AATT 3 cut(s) 422, 502, 634
MluNI TGGCCA 1 cut(s) 431
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 3 cut(s) 430, 575, 585
Mox20I TGGCCA 1 cut(s) 431
Mph1103I ATGCAT 2 cut(s) 286, 384
MscI TGGCCA 1 cut(s) 431
MseI TTAA 1 cut(s) 93
Msp20I TGGCCA 1 cut(s) 431
MwoI GCNNNNNNNGC 2 cut(s) 651, 706
NcoI CCATGG 3 cut(s) 116, 590, 681
NdeII GATC 2 cut(s) 238, 607
NlaIII CATG 7 cut(s) 120, 366, 386, 562, 594, 685, 690
NlaIV GGNNCC 1 cut(s) 270
NsiI ATGCAT 2 cut(s) 286, 384
NspI RCATGY 2 cut(s) 366, 690
PaeI GCATGC 1 cut(s) 366
PfeI GAWTC 2 cut(s) 214, 350
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 270
RsaI GTAC 2 cut(s) 21, 588
RsaNI GTAC 2 cut(s) 20, 587
SaqAI TTAA 1 cut(s) 93
Sau3AI GATC 2 cut(s) 238, 607
SchI GAGTC 1 cut(s) 170
SduI GDGCHC 2 cut(s) 188, 681
SetI ASST 8 cut(s) 25, 93, 203, 534, 567, 577, 616, 670
SfaNI GCATC 1 cut(s) 271
SphI GCATGC 1 cut(s) 366
Sse9I AATT 3 cut(s) 422, 502, 634
SsiI CCGC 1 cut(s) 312
StyI CCWWGG 3 cut(s) 116, 590, 681
TaaI ACNGT 3 cut(s) 19, 41, 515
TaqI TCGA 6 cut(s) 5, 27, 129, 231, 299, 372
TasI AATT 3 cut(s) 422, 502, 634
TfiI GAWTC 2 cut(s) 214, 350
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 1 cut(s) 46
TspDTI ATGAA 3 cut(s) 193, 462, 645
TspRI CASTG 1 cut(s) 46
XapI RAATTY 2 cut(s) 422, 634
XceI RCATGY 2 cut(s) 366, 690
Zsp2I ATGCAT 2 cut(s) 286, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.