Rw7G026560
ERF Family

Gamma-interferon-inducible lysosomal thiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0003951
Physical Location & Seq
Forward (+)
33781180 .. 33782881
1702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G026560.1

Sequence Viewer

Length: 522 bp
ATGGCCTCTGCTCTATTCTTCACTTGTCTCATTACCTGTTCAGTGTTCTTGCTTACTATTCCTTGTTATGTTGCTAATCAGAAAGTTACTCTCTCACTTTACTATGACTCTTTGAGCACATCTTGTGCTACCTTCATCGTCAAGAATCTTGCTAAGATTTTCGATGATGATCTCATCACCATTCTCAATCTCAGATTGGTTCCTTGGGGTGATGCATACGCCAACAAATCGAACAACAGCACCGCTTTCTGTCAGCATAGGCCAGATGGGTGTAAGTTGAATTTTTTGGAAGCATGCGCTATCGATGTTATGCATGATGTGAACAAACACTTTGCTTTGATCTACTGCATAGAATTTTTGGCCATAGAGGGAAGGCACAAGGAGTGGGAAACTTGCTTCAGTTCATTGGGACTGCCTAAGAAACCCACTTTAGATTGCTACAACAGTTCAAATGCAACAAAGGTTCCATATTTAATCCTATCTACAAGGATTCATGATGATTACGTTGTCCATTATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 map04612
Pfam Domains
Protein Families
GILT

Protein Analysis

173

Amino Acids

19.57

Weight (kDa)

6.27

Isoelectric Point (pI)

40.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 31 - 135 6.1e-25 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 243
AcoI YGGCCR 1 cut(s) 360
AcsI RAATTY 2 cut(s) 280, 353
AcuI CTGAAG 1 cut(s) 382
AgsI TTSAA 2 cut(s) 280, 450
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 32
AoxI GGCC 3 cut(s) 3, 260, 360
ApoI RAATTY 2 cut(s) 280, 353
AspLEI GCGC 1 cut(s) 299
AsuHPI GGTGA 2 cut(s) 169, 221
BalI TGGCCA 1 cut(s) 362
Bbv12I GWGCWC 1 cut(s) 119
BccI CCATC 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 32
BmiI GGNNCC 2 cut(s) 201, 465
BmsI GCATC 1 cut(s) 202
Bsa29I ATCGAT 1 cut(s) 303
BsaBI GATNNNNATC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 203
Bse8I GATNNNNATC 1 cut(s) 168
BseCI ATCGAT 1 cut(s) 303
BseDI CCNNGG 1 cut(s) 203
BseJI GATNNNNATC 1 cut(s) 168
BseMII CTCAG 1 cut(s) 205
BshFI GGCC 3 cut(s) 5, 262, 362
BshVI ATCGAT 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 119
BslFI GGGAC 1 cut(s) 423
BsmAI GTCTC 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 423
BsnI GGCC 3 cut(s) 5, 262, 362
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 2 cut(s) 169, 339
BspACI CCGC 1 cut(s) 243
BspANI GGCC 3 cut(s) 5, 262, 362
BspCNI CTCAG 1 cut(s) 204
BspDI ATCGAT 1 cut(s) 303
BspHI TCATGA 1 cut(s) 493
BspLI GGNNCC 2 cut(s) 201, 465
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 2 cut(s) 169, 339
BssT1I CCWWGG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 446
BstC8I GCNNGC 1 cut(s) 295
BstDEI CTNAG 3 cut(s) 153, 191, 417
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 2 cut(s) 172, 342
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 2 cut(s) 169, 339
BstNSI RCATGY 1 cut(s) 297
Bsu15I ATCGAT 1 cut(s) 303
BsuRI GGCC 3 cut(s) 5, 262, 362
BsuTUI ATCGAT 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 295
CciI TCATGA 1 cut(s) 493
CfoI GCGC 1 cut(s) 299
ClaI ATCGAT 1 cut(s) 303
CviAII CATG 3 cut(s) 294, 314, 494
CviJI RGCY 3 cut(s) 5, 262, 362
CviKI_1 RGCY 3 cut(s) 5, 262, 362
DdeI CTNAG 3 cut(s) 153, 191, 417
DpnI GATC 2 cut(s) 171, 341
DpnII GATC 2 cut(s) 169, 339
EaeI YGGCCR 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 203
EcoT22I ATGCAT 2 cut(s) 217, 315
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 3 cut(s) 297, 317, 497
FaqI GGGAC 1 cut(s) 423
FatI CATG 3 cut(s) 293, 313, 493
GlaI GCGC 1 cut(s) 298
HaeIII GGCC 3 cut(s) 5, 262, 362
HhaI GCGC 1 cut(s) 299
Hin1II CATG 3 cut(s) 297, 317, 497
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HinfI GANTC 3 cut(s) 107, 145, 490
HphI GGTGA 2 cut(s) 169, 221
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 2 cut(s) 81, 194
Hpy188III TCNNGA 2 cut(s) 142, 494
Hpy8I GTNNAC 1 cut(s) 322
HpyAV CCTTC 2 cut(s) 142, 366
HpyCH4III ACNGT 1 cut(s) 446
HpyCH4IV ACGT 1 cut(s) 504
HpyCH4V TGCA 4 cut(s) 215, 313, 348, 455
HpyF3I CTNAG 3 cut(s) 153, 191, 417
HpySE526I ACGT 1 cut(s) 504
Hsp92II CATG 3 cut(s) 297, 317, 497
HspAI GCGC 1 cut(s) 297
Kzo9I GATC 2 cut(s) 169, 339
LpnPI CCDG 2 cut(s) 49, 276
LweI GCATC 1 cut(s) 202
MaeII ACGT 1 cut(s) 504
MaeIII GTNAC 1 cut(s) 85
MalI GATC 2 cut(s) 171, 341
MboI GATC 2 cut(s) 169, 339
MboII GAAGA 1 cut(s) 10
MhlI GDGCHC 1 cut(s) 119
MlsI TGGCCA 1 cut(s) 362
MluCI AATT 2 cut(s) 280, 353
MluNI TGGCCA 1 cut(s) 362
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 2 cut(s) 16, 361
Mox20I TGGCCA 1 cut(s) 362
Mph1103I ATGCAT 2 cut(s) 217, 315
MscI TGGCCA 1 cut(s) 362
MseI TTAA 1 cut(s) 473
Msp20I TGGCCA 1 cut(s) 362
NdeII GATC 2 cut(s) 169, 339
NlaIII CATG 3 cut(s) 297, 317, 497
NlaIV GGNNCC 2 cut(s) 201, 465
NsiI ATGCAT 2 cut(s) 217, 315
NspI RCATGY 1 cut(s) 297
PaeI GCATGC 1 cut(s) 297
PagI TCATGA 1 cut(s) 493
PfeI GAWTC 2 cut(s) 145, 490
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
PspN4I GGNNCC 2 cut(s) 201, 465
SaqAI TTAA 1 cut(s) 473
Sau3AI GATC 2 cut(s) 169, 339
SchI GAGTC 1 cut(s) 101
SduI GDGCHC 1 cut(s) 119
SetI ASST 4 cut(s) 38, 134, 465, 507
SfaNI GCATC 1 cut(s) 202
SphI GCATGC 1 cut(s) 297
Sse9I AATT 2 cut(s) 280, 353
SsiI CCGC 1 cut(s) 243
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 1 cut(s) 446
TaiI ACGT 1 cut(s) 507
TaqI TCGA 3 cut(s) 162, 230, 303
TasI AATT 2 cut(s) 280, 353
TfiI GAWTC 2 cut(s) 145, 490
Tru1I TTAA 1 cut(s) 473
Tru9I TTAA 1 cut(s) 473
TscAI CASTG 1 cut(s) 48
TspDTI ATGAA 3 cut(s) 124, 393, 482
TspRI CASTG 1 cut(s) 48
XapI RAATTY 2 cut(s) 280, 353
XceI RCATGY 1 cut(s) 297
Zsp2I ATGCAT 2 cut(s) 217, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.