Rw0G007870
ERF Family

Gamma-interferon-inducible lysosomal thiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00290
OG0003951
Physical Location & Seq
Reverse (-)
15636 .. 16674
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G007870.1

Sequence Viewer

Length: 651 bp
ATGGCATCTGCTCTATTCTTCACTTGTCTGACCTGTTCAATGTTCCTGCTTACTATTCCTTGTTATGTTGCTAATCAGAAAGTTACTCTCTCTCTTTACTATGACTCTTTGAGCACATCTTGTGCAACCTTCATCGTCAAGAATCTTGCTAAGATTTTCGATGATGATCTCATCACCATTCTCAATCTCAGACTGGTTCCTTGGGGTGATGCATACGCCAACAAATCGAACAACAGCACCGCTTTCTGTCAGCATAGGCCAGATGGGTGTAAGTTGAATTCTCTGGAAGCATGCGCTATCGATGTTATGCATGATGTGAACAAGCACTTTGCTTTGATTTACTGCATAGAATTTCTGGCCATAGAGGGAAGGCACAAGGAGTGGGAAACTTGCTTCAGTTCATTGGGACTGCCTAAGAAACCCACTTTGAATTGCTACAACAGTTCAAATGCAACAAAGCTTGAACAAAACTATGGCAATGAAACCATGCACCTCAATCCACCTCTAAAGTTTGTACCATGGCTGGTTCTGAACGATCAACCTATTGGAAATGACTATGAAAATTTTGCTGGCTATGTGTGCAAGGCTTACAAAGGTAACATTGTGCCCATGGCATGTCAATCTGTGCATTTGAAGCAGAAAACAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 map04612
Pfam Domains
Protein Families
GILT

Protein Analysis

216

Amino Acids

24.33

Weight (kDa)

6.57

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 30 - 134 6.3e-25 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 240
AcoI YGGCCR 1 cut(s) 357
AcsI RAATTY 3 cut(s) 277, 350, 562
AcuI CTGAAG 1 cut(s) 379
AfaI GTAC 1 cut(s) 516
AgsI TTSAA 6 cut(s) 39, 277, 430, 447, 464, 634
AluBI AGCT 1 cut(s) 460
AluI AGCT 1 cut(s) 460
Alw21I GWGCWC 1 cut(s) 116
AoxI GGCC 2 cut(s) 257, 357
ApoI RAATTY 3 cut(s) 277, 350, 562
AspLEI GCGC 1 cut(s) 296
AsuHPI GGTGA 2 cut(s) 166, 218
BaeGI GKGCMC 1 cut(s) 609
BalI TGGCCA 1 cut(s) 359
Bbv12I GWGCWC 1 cut(s) 116
BccI CCATC 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 198
BmsI GCATC 2 cut(s) 14, 199
Bsa29I ATCGAT 1 cut(s) 300
BsaBI GATNNNNATC 1 cut(s) 165
BsaJI CCNNGG 3 cut(s) 200, 518, 609
Bse1I ACTGG 1 cut(s) 198
Bse3DI GCAATG 1 cut(s) 484
Bse8I GATNNNNATC 1 cut(s) 165
BseCI ATCGAT 1 cut(s) 300
BseDI CCNNGG 3 cut(s) 200, 518, 609
BseJI GATNNNNATC 1 cut(s) 165
BseMI GCAATG 1 cut(s) 484
BseMII CTCAG 1 cut(s) 202
BseNI ACTGG 1 cut(s) 198
BseSI GKGCMC 1 cut(s) 609
BshFI GGCC 2 cut(s) 259, 359
BshVI ATCGAT 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 116
BslFI GGGAC 1 cut(s) 420
BsmFI GGGAC 1 cut(s) 420
BsnI GGCC 2 cut(s) 259, 359
Bsp1286I GDGCHC 2 cut(s) 116, 609
Bsp143I GATC 2 cut(s) 166, 535
Bsp19I CCATGG 2 cut(s) 518, 609
BspACI CCGC 1 cut(s) 240
BspANI GGCC 2 cut(s) 259, 359
BspCNI CTCAG 1 cut(s) 201
BspDI ATCGAT 1 cut(s) 300
BspLI GGNNCC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 484
BsrI ACTGG 1 cut(s) 198
BssECI CCNNGG 3 cut(s) 200, 518, 609
BssMI GATC 2 cut(s) 166, 535
BssT1I CCWWGG 3 cut(s) 200, 518, 609
Bst4CI ACNGT 1 cut(s) 443
BstC8I GCNNGC 2 cut(s) 292, 571
BstDEI CTNAG 3 cut(s) 150, 188, 414
BstDSI CCRYGG 2 cut(s) 518, 609
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 2 cut(s) 169, 538
BstMBI GATC 2 cut(s) 166, 535
BstMWI GCNNNNNNNGC 2 cut(s) 579, 634
BstNSI RCATGY 2 cut(s) 294, 618
BstSLI GKGCMC 1 cut(s) 609
Bsu15I ATCGAT 1 cut(s) 300
BsuRI GGCC 2 cut(s) 259, 359
BsuTUI ATCGAT 1 cut(s) 300
BtgI CCRYGG 2 cut(s) 518, 609
Cac8I GCNNGC 2 cut(s) 292, 571
CfoI GCGC 1 cut(s) 296
ClaI ATCGAT 1 cut(s) 300
Csp6I GTAC 1 cut(s) 515
CviAII CATG 6 cut(s) 291, 311, 487, 519, 610, 615
CviJI RGCY 6 cut(s) 259, 359, 460, 523, 573, 587
CviKI_1 RGCY 6 cut(s) 259, 359, 460, 523, 573, 587
CviQI GTAC 1 cut(s) 515
DdeI CTNAG 3 cut(s) 150, 188, 414
DpnI GATC 2 cut(s) 168, 537
DpnII GATC 2 cut(s) 166, 535
EaeI YGGCCR 1 cut(s) 357
Eco130I CCWWGG 3 cut(s) 200, 518, 609
Eco57I CTGAAG 1 cut(s) 379
EcoRI GAATTC 1 cut(s) 277
EcoT14I CCWWGG 3 cut(s) 200, 518, 609
EcoT22I ATGCAT 2 cut(s) 214, 312
ErhI CCWWGG 3 cut(s) 200, 518, 609
FaeI CATG 6 cut(s) 294, 314, 490, 522, 613, 618
FaqI GGGAC 1 cut(s) 420
FatI CATG 6 cut(s) 290, 310, 486, 518, 609, 614
GlaI GCGC 1 cut(s) 295
HaeIII GGCC 2 cut(s) 259, 359
HhaI GCGC 1 cut(s) 296
Hin1II CATG 6 cut(s) 294, 314, 490, 522, 613, 618
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 2 cut(s) 104, 142
HphI GGTGA 2 cut(s) 166, 218
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 4 cut(s) 30, 78, 191, 531
Hpy188III TCNNGA 2 cut(s) 139, 284
Hpy8I GTNNAC 1 cut(s) 319
HpyAV CCTTC 2 cut(s) 139, 363
HpyCH4III ACNGT 1 cut(s) 443
HpyCH4V TGCA 8 cut(s) 125, 212, 310, 345, 452, 490, 582, 628
HpyF10VI GCNNNNNNNGC 2 cut(s) 579, 634
HpyF3I CTNAG 3 cut(s) 150, 188, 414
Hsp92II CATG 6 cut(s) 294, 314, 490, 522, 613, 618
HspAI GCGC 1 cut(s) 294
Kzo9I GATC 2 cut(s) 166, 535
LpnPI CCDG 8 cut(s) 46, 59, 179, 269, 273, 341, 509, 555
LweI GCATC 2 cut(s) 14, 199
MaeIII GTNAC 2 cut(s) 82, 596
MalI GATC 2 cut(s) 168, 537
MboI GATC 2 cut(s) 166, 535
MboII GAAGA 1 cut(s) 10
MhlI GDGCHC 2 cut(s) 116, 609
MlsI TGGCCA 1 cut(s) 359
MluCI AATT 4 cut(s) 277, 350, 430, 562
MluNI TGGCCA 1 cut(s) 359
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 3 cut(s) 358, 503, 513
Mox20I TGGCCA 1 cut(s) 359
Mph1103I ATGCAT 2 cut(s) 214, 312
MscI TGGCCA 1 cut(s) 359
Msp20I TGGCCA 1 cut(s) 359
MwoI GCNNNNNNNGC 2 cut(s) 579, 634
NcoI CCATGG 2 cut(s) 518, 609
NdeII GATC 2 cut(s) 166, 535
NlaIII CATG 6 cut(s) 294, 314, 490, 522, 613, 618
NlaIV GGNNCC 1 cut(s) 198
NsiI ATGCAT 2 cut(s) 214, 312
NspI RCATGY 2 cut(s) 294, 618
PaeI GCATGC 1 cut(s) 294
PfeI GAWTC 1 cut(s) 142
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PspN4I GGNNCC 1 cut(s) 198
RsaI GTAC 1 cut(s) 516
RsaNI GTAC 1 cut(s) 515
Sau3AI GATC 2 cut(s) 166, 535
SchI GAGTC 1 cut(s) 98
SduI GDGCHC 2 cut(s) 116, 609
SetI ASST 7 cut(s) 35, 131, 462, 495, 505, 544, 598
SfaNI GCATC 2 cut(s) 14, 199
SphI GCATGC 1 cut(s) 294
Sse9I AATT 4 cut(s) 277, 350, 430, 562
SsiI CCGC 1 cut(s) 240
StyI CCWWGG 3 cut(s) 200, 518, 609
TaaI ACNGT 1 cut(s) 443
TaqI TCGA 3 cut(s) 159, 227, 300
TasI AATT 4 cut(s) 277, 350, 430, 562
TfiI GAWTC 1 cut(s) 142
TspDTI ATGAA 4 cut(s) 121, 390, 495, 573
XapI RAATTY 3 cut(s) 277, 350, 562
XceI RCATGY 2 cut(s) 294, 618
Zsp2I ATGCAT 2 cut(s) 214, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.