Rh3DG356700

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0003951
Physical Location & Seq
Reverse (-)
43447673 .. 43449759
2087 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG356700.1

Sequence Viewer

Length: 600 bp
ATGTCGAAGTTGGGGACTGTACCTATTGATTGCTACAACAGTGGATATGGCAATCAGATTGAAACAAAATATGCAAAGGAAACTGCTCAGCTTAATCCACCACGTAGATTTGTGCCATGGCTGGTTGTCAATAATAAACCACTTGCAGAGGACTACGGAAATTTTATGGCCTATATCTGTAAGGCATACAAAGGAAAATCTCCAGAAGCTTGCAGATCAATTCGCTACAAGACTGAATCAATTGGAAATGAAAAATCGATTTCTCAAAATCTTGCTAAGATTTTCGATGATGATCTCATCACCATTCTCAATCTCAGACTGGTTCCTTGGGGTGATGCATACACCAACAAATCGAACAACAGCACCGCTTTCTGTCAGCATAGGCCAGATGGTTCAAATGCAACAAAGCTTGAACAAAACTATGGCAATGAAACCATGCACCTCAATCCACCTCTAAAGTTTGTACCATGGCTGGTTCTGAACGATCAACCTATTGGAAATGACTATGAAAATTTTGCTGGCTATGTGTGCAAGGCTTACAAAGGTAACATTGTGCCCATGGCATGTCAATCTGTGCATTTGAAGCAGAAAACAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

199

Amino Acids

22.5

Weight (kDa)

8.64

Isoelectric Point (pI)

42.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 76 - 136 7.3e-06 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 366
AcsI RAATTY 2 cut(s) 160, 511
AfaI GTAC 2 cut(s) 21, 465
AgsI TTSAA 4 cut(s) 62, 396, 413, 583
AluBI AGCT 3 cut(s) 91, 209, 409
AluI AGCT 3 cut(s) 91, 209, 409
AoxI GGCC 2 cut(s) 168, 383
ApoI RAATTY 2 cut(s) 160, 511
AsuHPI GGTGA 2 cut(s) 292, 344
BaeGI GKGCMC 1 cut(s) 558
BccI CCATC 1 cut(s) 383
BlpI GCTNAGC 1 cut(s) 87
BmiI GGNNCC 1 cut(s) 324
BmsI GCATC 1 cut(s) 325
BpmI CTGGAG 1 cut(s) 186
Bpu1102I GCTNAGC 1 cut(s) 87
Bsa29I ATCGAT 1 cut(s) 257
BsaAI YACGTR 1 cut(s) 104
BsaBI GATNNNNATC 1 cut(s) 291
BsaJI CCNNGG 4 cut(s) 116, 326, 467, 558
Bse1I ACTGG 1 cut(s) 324
Bse3DI GCAATG 1 cut(s) 433
Bse8I GATNNNNATC 1 cut(s) 291
BseCI ATCGAT 1 cut(s) 257
BseDI CCNNGG 4 cut(s) 116, 326, 467, 558
BseJI GATNNNNATC 1 cut(s) 291
BseMI GCAATG 1 cut(s) 433
BseMII CTCAG 2 cut(s) 101, 328
BseNI ACTGG 1 cut(s) 324
BseSI GKGCMC 1 cut(s) 558
BshFI GGCC 2 cut(s) 170, 385
BshVI ATCGAT 1 cut(s) 257
BslFI GGGAC 1 cut(s) 28
BsmFI GGGAC 1 cut(s) 28
BsnI GGCC 2 cut(s) 170, 385
Bsp1286I GDGCHC 1 cut(s) 558
Bsp143I GATC 3 cut(s) 215, 292, 484
Bsp1720I GCTNAGC 1 cut(s) 87
Bsp19I CCATGG 3 cut(s) 116, 467, 558
BspACI CCGC 1 cut(s) 366
BspANI GGCC 2 cut(s) 170, 385
BspCNI CTCAG 2 cut(s) 100, 327
BspDI ATCGAT 1 cut(s) 257
BspLI GGNNCC 1 cut(s) 324
BsrDI GCAATG 1 cut(s) 433
BsrI ACTGG 1 cut(s) 324
BssECI CCNNGG 4 cut(s) 116, 326, 467, 558
BssMI GATC 3 cut(s) 215, 292, 484
BssT1I CCWWGG 4 cut(s) 116, 326, 467, 558
Bst4CI ACNGT 2 cut(s) 19, 41
BstBAI YACGTR 1 cut(s) 104
BstC8I GCNNGC 2 cut(s) 211, 520
BstDEI CTNAG 3 cut(s) 87, 276, 314
BstDSI CCRYGG 3 cut(s) 116, 467, 558
BstKTI GATC 3 cut(s) 218, 295, 487
BstMBI GATC 3 cut(s) 215, 292, 484
BstMWI GCNNNNNNNGC 2 cut(s) 528, 583
BstNSI RCATGY 1 cut(s) 567
BstSLI GKGCMC 1 cut(s) 558
Bsu15I ATCGAT 1 cut(s) 257
BsuRI GGCC 2 cut(s) 170, 385
BsuTUI ATCGAT 1 cut(s) 257
BtgI CCRYGG 3 cut(s) 116, 467, 558
BtsIMutI CAGTG 1 cut(s) 46
Cac8I GCNNGC 2 cut(s) 211, 520
ClaI ATCGAT 1 cut(s) 257
Csp6I GTAC 2 cut(s) 20, 464
CviAII CATG 5 cut(s) 117, 436, 468, 559, 564
CviJI RGCY 9 cut(s) 91, 121, 170, 209, 385, 409, 472, 522, 536
CviKI_1 RGCY 9 cut(s) 91, 121, 170, 209, 385, 409, 472, 522, 536
CviQI GTAC 2 cut(s) 20, 464
DdeI CTNAG 3 cut(s) 87, 276, 314
DpnI GATC 3 cut(s) 217, 294, 486
DpnII GATC 3 cut(s) 215, 292, 484
Eco130I CCWWGG 4 cut(s) 116, 326, 467, 558
EcoT14I CCWWGG 4 cut(s) 116, 326, 467, 558
EcoT22I ATGCAT 1 cut(s) 340
ErhI CCWWGG 4 cut(s) 116, 326, 467, 558
FaeI CATG 5 cut(s) 120, 439, 471, 562, 567
FaqI GGGAC 1 cut(s) 28
FatI CATG 5 cut(s) 116, 435, 467, 558, 563
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 2 cut(s) 170, 385
Hin1II CATG 5 cut(s) 120, 439, 471, 562, 567
HindIII AAGCTT 2 cut(s) 207, 407
HinfI GANTC 1 cut(s) 236
HphI GGTGA 2 cut(s) 292, 344
Hpy188I TCNGA 3 cut(s) 57, 317, 480
Hpy188III TCNNGA 1 cut(s) 203
HpyCH4III ACNGT 2 cut(s) 19, 41
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 8 cut(s) 74, 146, 213, 338, 401, 439, 531, 577
HpyF10VI GCNNNNNNNGC 2 cut(s) 528, 583
HpyF3I CTNAG 3 cut(s) 87, 276, 314
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 5 cut(s) 120, 439, 471, 562, 567
Kzo9I GATC 3 cut(s) 215, 292, 484
LpnPI CCDG 6 cut(s) 107, 216, 305, 399, 458, 504
LweI GCATC 1 cut(s) 325
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 1 cut(s) 545
MalI GATC 3 cut(s) 217, 294, 486
MboI GATC 3 cut(s) 215, 292, 484
MfeI CAATTG 1 cut(s) 240
MhlI GDGCHC 1 cut(s) 558
MluCI AATT 4 cut(s) 160, 219, 240, 511
MnlI CCTC 3 cut(s) 142, 452, 462
Mph1103I ATGCAT 1 cut(s) 340
MseI TTAA 1 cut(s) 93
MunI CAATTG 1 cut(s) 240
MwoI GCNNNNNNNGC 2 cut(s) 528, 583
NcoI CCATGG 3 cut(s) 116, 467, 558
NdeII GATC 3 cut(s) 215, 292, 484
NlaIII CATG 5 cut(s) 120, 439, 471, 562, 567
NlaIV GGNNCC 1 cut(s) 324
NsiI ATGCAT 1 cut(s) 340
NspI RCATGY 1 cut(s) 567
PfeI GAWTC 1 cut(s) 236
Ppu21I YACGTR 1 cut(s) 104
PspN4I GGNNCC 1 cut(s) 324
RsaI GTAC 2 cut(s) 21, 465
RsaNI GTAC 2 cut(s) 20, 464
SaqAI TTAA 1 cut(s) 93
Sau3AI GATC 3 cut(s) 215, 292, 484
SduI GDGCHC 1 cut(s) 558
SetI ASST 9 cut(s) 25, 93, 106, 211, 411, 444, 454, 493, 547
SfaNI GCATC 1 cut(s) 325
Sse9I AATT 4 cut(s) 160, 219, 240, 511
SsiI CCGC 1 cut(s) 366
StyI CCWWGG 4 cut(s) 116, 326, 467, 558
TaaI ACNGT 2 cut(s) 19, 41
TaiI ACGT 1 cut(s) 106
TaqI TCGA 4 cut(s) 5, 257, 285, 353
TasI AATT 4 cut(s) 160, 219, 240, 511
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 1 cut(s) 46
TspDTI ATGAA 3 cut(s) 264, 444, 522
TspGWI ACGGA 1 cut(s) 171
TspRI CASTG 1 cut(s) 46
XapI RAATTY 2 cut(s) 160, 511
XceI RCATGY 1 cut(s) 567
Zsp2I ATGCAT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.