Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003951

Physical Location & Seq

Genomic Coordinates Reverse (-)

19097139 .. 19098435

Gene Structure 1297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g16810.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCTGCTGCTACTTATTTATCCTTCACTTTGATCATTGCCAGCACTTTGTGCTCGTTCGGATCAGTTTCGAGTATTGAAGCTCAGAAACTTACTCTCTCAGTTTACTATGAAACTCTTTGCCCCCGTTGTGCTACTTTCATCGTCAAAAATCTTGCTCGAATTTTCGACAATGAACTCATCACCATTCTAAATCTCAGGCTGGTTCCTTGGGGAAATGCATCTACAAACAATTCGAACAACGCCACTTTTTGTCAGCACGGACCAGATGAGTGCAGGCTAAATTCTCTGGAAGCTTGTGCAATCGACGTTTTACATGATGTGAACAAGCATTTTGCTTTGATATACTGCATAGAATTTCTGGCCATTGAGGGAAGGCACAAGGAATGGCAAACTTGTTTCAGCTCATTGGGATTGCCTTTAAAGCCCGTTTTGGATTGCTACAAAAGTGCAAATGCAACAAAGCTTGAACTAAAATATGCGAATGAAACCGCGCACCTCAGTCTGCCTCTTAAGTTCGTTCCATGGCTGGTTCTGAACAATCAACCGATTGGAAATGACTACGAAAATTTCGCTTCCTATGTATGCAAGGCTTACAAAGGTGTGGCTGTGCCGATGGCCTGCCGATCTGTGCATTTGAAGCAAAAGGCACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT

Protein Analysis

219

Amino Acids

24.3

Weight (kDa)

7.98

Isoelectric Point (pI)

32.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003951)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g03550 FvH4_6g03570 FvH4_6g10810
malus_domestica	MD04G1164100.v1.1 MD12G1177700.v1.1
prunus_persica	Prupe.6G283200_v2.0.a1 Prupe.6G283200_v2.0.a1
pyrus_communis	pycom12g16810
rosa_chinensis	RchiOBHm_Chr3g0461901 RchiOBHm_Chr3g0461911 RchiOBHm_Chr3g0461951 RchiOBHm_Chr3g0462021 RchiOBHm_Chr7g0217871 RchiOBHm_Chr7g0217891 RchiOBHm_Chr7g0217931
rosa_laevigata	RLG00000024885 RLG00000024890
rosa_multiflora	Rmu_sc0005209.1_g000006
rosa_roxburghii	Rroxscaffold_6G00417850
rosa_rugosa	Rorug03G0054500 Rorug07G0172100
rosa_samantha	Rh3AG112500 Rh3AG112700 Rh3CG118200 Rh3DG117300 Rh3DG356700 Rh7AG313300 Rh7AG313700 Rh7BG304300 Rh7BG304400 Rh7DG312200
rosa_wichuraiana	Rw0G007870 Rw0G017260 Rw7G026560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	494
AciI	CCGC	1 cut(s)	492
AclWI	GGATC	1 cut(s)	70
AcoI	YGGCCR	1 cut(s)	363
AcsI	RAATTY	4 cut(s)	162, 283, 356, 568
AdeI	CACNNNGTG	1 cut(s)	51
AflII	CTTAAG	1 cut(s)	512
AgsI	TTSAA	3 cut(s)	80, 470, 640
AluBI	AGCT	4 cut(s)	83, 296, 405, 466
AluI	AGCT	4 cut(s)	83, 296, 405, 466
Alw21I	GWGCWC	1 cut(s)	56
AlwI	GGATC	1 cut(s)	70
AoxI	GGCC	2 cut(s)	363, 618
ApeKI	GCWGC	2 cut(s)	5, 8
ApoI	RAATTY	4 cut(s)	162, 283, 356, 568
AspLEI	GCGC	1 cut(s)	496
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	175
AsuII	TTCGAA	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	263
BalI	TGGCCA	1 cut(s)	365
Bbv12I	GWGCWC	1 cut(s)	56
BccI	CCATC	1 cut(s)	610
BclI	TGATCA	1 cut(s)	33
BfrI	CTTAAG	1 cut(s)	512
BisI	GCNGC	2 cut(s)	6, 9
BlsI	GCNGC	2 cut(s)	7, 10
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	207
BmsI	GCATC	1 cut(s)	230
Bpu14I	TTCGAA	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	209, 524
Bse3DI	GCAATG	1 cut(s)	36
BseDI	CCNNGG	2 cut(s)	209, 524
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	4 cut(s)	98, 114, 211, 514
BsgI	GTGCAG	1 cut(s)	295
Bsh1236I	CGCG	1 cut(s)	494
BshFI	GGCC	2 cut(s)	365, 620
BsiHKAI	GWGCWC	1 cut(s)	56
BsnI	GGCC	2 cut(s)	365, 620
Bsp119I	TTCGAA	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	3 cut(s)	33, 62, 626
Bsp19I	CCATGG	1 cut(s)	524
BspACI	CCGC	1 cut(s)	492
BspANI	GGCC	2 cut(s)	365, 620
BspCNI	CTCAG	4 cut(s)	97, 113, 210, 513
BspFNI	CGCG	1 cut(s)	494
BspLI	GGNNCC	1 cut(s)	207
BspPI	GGATC	1 cut(s)	70
BspT104I	TTCGAA	1 cut(s)	236
BspTI	CTTAAG	1 cut(s)	512
BsrDI	GCAATG	1 cut(s)	36
BssECI	CCNNGG	2 cut(s)	209, 524
BssMI	GATC	3 cut(s)	33, 62, 626
BssT1I	CCWWGG	2 cut(s)	209, 524
BstAFI	CTTAAG	1 cut(s)	512
BstAPI	GCANNNNNTGC	1 cut(s)	51
BstBI	TTCGAA	1 cut(s)	236
BstC8I	GCNNGC	3 cut(s)	43, 278, 622
BstDEI	CTNAG	4 cut(s)	84, 100, 197, 500
BstDSI	CCRYGG	1 cut(s)	524
BstFNI	CGCG	1 cut(s)	494
BstHHI	GCGC	1 cut(s)	496
BstKTI	GATC	3 cut(s)	36, 65, 629
BstMBI	GATC	3 cut(s)	33, 62, 626
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 424, 640
BstUI	CGCG	1 cut(s)	494
BsuRI	GGCC	2 cut(s)	365, 620
BtgI	CCRYGG	1 cut(s)	524
Cac8I	GCNNGC	3 cut(s)	43, 278, 622
CfoI	GCGC	1 cut(s)	496
Cfr13I	GGNCC	1 cut(s)	263
CviAII	CATG	2 cut(s)	317, 525
DdeI	CTNAG	4 cut(s)	84, 100, 197, 500
DpnI	GATC	3 cut(s)	35, 64, 628
DpnII	GATC	3 cut(s)	33, 62, 626
DraI	TTTAAA	1 cut(s)	423
DraIII	CACNNNGTG	1 cut(s)	51
EaeI	YGGCCR	1 cut(s)	363
Eco130I	CCWWGG	2 cut(s)	209, 524
Eco47I	GGWCC	1 cut(s)	263
EcoT14I	CCWWGG	2 cut(s)	209, 524
EcoT22I	ATGCAT	1 cut(s)	223
ErhI	CCWWGG	2 cut(s)	209, 524
FaeI	CATG	2 cut(s)	320, 528
FaiI	YATR	8 cut(s)	111, 318, 346, 353, 480, 526, 582, 586
FatI	CATG	2 cut(s)	316, 524
FbaI	TGATCA	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	6, 9
Fsp4HI	GCNGC	2 cut(s)	6, 9
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	2 cut(s)	6, 9
HaeIII	GGCC	2 cut(s)	365, 620
HhaI	GCGC	1 cut(s)	496
Hin1II	CATG	2 cut(s)	320, 528
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HindIII	AAGCTT	2 cut(s)	294, 464
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	2 cut(s)	106, 325
Hpy188I	TCNGA	3 cut(s)	62, 87, 537
Hpy188III	TCNNGA	1 cut(s)	290
Hpy8I	GTNNAC	2 cut(s)	106, 325
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	2 cut(s)	34, 369
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	8 cut(s)	221, 276, 302, 351, 452, 458, 588, 634
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 424, 640
HpyF3I	CTNAG	4 cut(s)	84, 100, 197, 500
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	2 cut(s)	320, 528
HspAI	GCGC	1 cut(s)	494
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	3 cut(s)	33, 62, 626
LpnPI	CCDG	9 cut(s)	55, 184, 188, 262, 275, 279, 347, 515, 634
LweI	GCATC	1 cut(s)	230
MaeII	ACGT	1 cut(s)	309
MalI	GATC	3 cut(s)	35, 64, 628
MboI	GATC	3 cut(s)	33, 62, 626
MhlI	GDGCHC	1 cut(s)	56
MlsI	TGGCCA	1 cut(s)	365
MluCI	AATT	5 cut(s)	162, 232, 283, 356, 568
MluNI	TGGCCA	1 cut(s)	365
MnlI	CCTC	3 cut(s)	364, 509, 519
Mox20I	TGGCCA	1 cut(s)	365
Mph1103I	ATGCAT	1 cut(s)	223
MscI	TGGCCA	1 cut(s)	365
MseI	TTAA	2 cut(s)	422, 513
Msp20I	TGGCCA	1 cut(s)	365
MspCI	CTTAAG	1 cut(s)	512
MvnI	CGCG	1 cut(s)	494
MwoI	GCNNNNNNNGC	3 cut(s)	51, 424, 640
NcoI	CCATGG	1 cut(s)	524
NdeII	GATC	3 cut(s)	33, 62, 626
NlaIII	CATG	2 cut(s)	320, 528
NlaIV	GGNNCC	1 cut(s)	207
NsiI	ATGCAT	1 cut(s)	223
NspV	TTCGAA	1 cut(s)	236
PkrI	GCNGC	2 cut(s)	7, 10
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	1 cut(s)	263
SaqAI	TTAA	2 cut(s)	422, 513
SatI	GCNGC	2 cut(s)	6, 9
Sau3AI	GATC	3 cut(s)	33, 62, 626
Sau96I	GGNCC	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	7 cut(s)	85, 298, 312, 407, 468, 501, 604
SfaNI	GCATC	1 cut(s)	230
SfuI	TTCGAA	1 cut(s)	236
SinI	GGWCC	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	5 cut(s)	162, 232, 283, 356, 568
SsiI	CCGC	1 cut(s)	492
StyI	CCWWGG	2 cut(s)	209, 524
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	5 cut(s)	71, 160, 168, 236, 306
TasI	AATT	5 cut(s)	162, 232, 283, 356, 568
Tru1I	TTAA	2 cut(s)	422, 513
Tru9I	TTAA	2 cut(s)	422, 513
TseI	GCWGC	2 cut(s)	5, 8
TspDTI	ATGAA	4 cut(s)	126, 130, 189, 501
TspGWI	ACGGA	1 cut(s)	276
Vha464I	CTTAAG	1 cut(s)	512
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	4 cut(s)	162, 283, 356, 568
Zsp2I	ATGCAT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.