FvH4_6g03570

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003951
Physical Location & Seq
Forward (+)
1969233 .. 1970273
1041 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03570.t1

Sequence Viewer

Length: 423 bp
ATGGCATCTGCTCGATTATTCTTTACTTGTCTCATTACCTGTTCAATGTTCTTGCTCACATTTCCATGTTTTGCTGCTAATCAGAAAGTTACTTTGTCACTTTACTATGACACTTTGAGCATATCTTGTGCTACCTTCATTGTAAAAAATCTTGCTAAGATTTTCGATGATGATCTCATCACCATCATTAATCTCAGATTGGTTCCTTGGGGTGATGCATACACCAACAAATCGAACAACAACACTGCTTTTTGTCAGCATAGGCCAGATCAGTGCAAGTTGAATTCTCTACAATCATGCGCTATCGATGTTATGCATGATGTGGACTATGAAAAGTTTGTCGGCTATGTGTGCAAGGCTTACAAATGTAAAATTGTGCCCATGACATGTCAATCTGTGCACTTGAAGCAAAAGACAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

141

Amino Acids

15.93

Weight (kDa)

8.32

Isoelectric Point (pI)

30.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 32 - 113 8.3e-19 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 283
AflIII ACRYGT 1 cut(s) 386
AgsI TTSAA 3 cut(s) 45, 283, 406
Alw21I GWGCWC 1 cut(s) 402
Alw26I GTCTC 1 cut(s) 35
Alw44I GTGCAC 1 cut(s) 398
AoxI GGCC 1 cut(s) 263
ApaLI GTGCAC 1 cut(s) 398
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 283
AseI ATTAAT 1 cut(s) 189
AspLEI GCGC 1 cut(s) 302
AsuHPI GGTGA 2 cut(s) 172, 224
BaeGI GKGCMC 2 cut(s) 381, 402
Bbv12I GWGCWC 1 cut(s) 402
BbvI GCAGC 1 cut(s) 61
BccI CCATC 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 35
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 204
BmsI GCATC 2 cut(s) 14, 205
Bsa29I ATCGAT 1 cut(s) 306
BsaBI GATNNNNATC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 206
Bse8I GATNNNNATC 1 cut(s) 171
BseCI ATCGAT 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 206
BseJI GATNNNNATC 1 cut(s) 171
BseMII CTCAG 1 cut(s) 208
BseSI GKGCMC 2 cut(s) 381, 402
BseXI GCAGC 1 cut(s) 61
BshFI GGCC 1 cut(s) 265
BshVI ATCGAT 1 cut(s) 306
BsiHKAI GWGCWC 1 cut(s) 402
BsmAI GTCTC 1 cut(s) 35
BsnI GGCC 1 cut(s) 265
Bsp1286I GDGCHC 2 cut(s) 381, 402
Bsp143I GATC 2 cut(s) 172, 268
BspANI GGCC 1 cut(s) 265
BspCNI CTCAG 1 cut(s) 207
BspDI ATCGAT 1 cut(s) 306
BspLI GGNNCC 1 cut(s) 204
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 2 cut(s) 172, 268
BssT1I CCWWGG 1 cut(s) 206
BstDEI CTNAG 2 cut(s) 156, 194
BstHHI GCGC 1 cut(s) 302
BstKTI GATC 2 cut(s) 175, 271
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 2 cut(s) 172, 268
BstMWI GCNNNNNNNGC 2 cut(s) 351, 406
BstNSI RCATGY 1 cut(s) 390
BstSLI GKGCMC 2 cut(s) 381, 402
BstV1I GCAGC 1 cut(s) 61
Bsu15I ATCGAT 1 cut(s) 306
BsuRI GGCC 1 cut(s) 265
BsuTUI ATCGAT 1 cut(s) 306
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 2 cut(s) 243, 278
CfoI GCGC 1 cut(s) 302
ClaI ATCGAT 1 cut(s) 306
CviAII CATG 5 cut(s) 66, 297, 317, 382, 387
CviJI RGCY 3 cut(s) 265, 345, 359
CviKI_1 RGCY 3 cut(s) 265, 345, 359
DdeI CTNAG 2 cut(s) 156, 194
DpnI GATC 2 cut(s) 174, 270
DpnII GATC 2 cut(s) 172, 268
Eco130I CCWWGG 1 cut(s) 206
EcoRI GAATTC 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 206
EcoT22I ATGCAT 2 cut(s) 220, 318
ErhI CCWWGG 1 cut(s) 206
FaeI CATG 5 cut(s) 69, 300, 320, 385, 390
FatI CATG 5 cut(s) 65, 296, 316, 381, 386
Fnu4HI GCNGC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 75
GlaI GCGC 1 cut(s) 301
GluI GCNGC 1 cut(s) 75
HaeIII GGCC 1 cut(s) 265
HhaI GCGC 1 cut(s) 302
Hin1II CATG 5 cut(s) 69, 300, 320, 385, 390
Hin6I GCGC 1 cut(s) 300
HinP1I GCGC 1 cut(s) 300
HphI GGTGA 2 cut(s) 172, 224
Hpy166II GTNNAC 2 cut(s) 325, 400
Hpy188I TCNGA 2 cut(s) 84, 197
Hpy8I GTNNAC 2 cut(s) 325, 400
HpyAV CCTTC 1 cut(s) 145
HpyCH4V TGCA 5 cut(s) 218, 276, 316, 354, 400
HpyF10VI GCNNNNNNNGC 2 cut(s) 351, 406
HpyF3I CTNAG 2 cut(s) 156, 194
Hsp92II CATG 5 cut(s) 69, 300, 320, 385, 390
HspAI GCGC 1 cut(s) 300
Kzo9I GATC 2 cut(s) 172, 268
LpnPI CCDG 2 cut(s) 52, 279
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 2 cut(s) 14, 205
MaeIII GTNAC 2 cut(s) 88, 96
MalI GATC 2 cut(s) 174, 270
MboI GATC 2 cut(s) 172, 268
MhlI GDGCHC 2 cut(s) 381, 402
MluCI AATT 2 cut(s) 283, 372
Mph1103I ATGCAT 2 cut(s) 220, 318
MseI TTAA 1 cut(s) 189
MslI CAYNNNNRTG 1 cut(s) 64
MwoI GCNNNNNNNGC 2 cut(s) 351, 406
NdeII GATC 2 cut(s) 172, 268
NlaIII CATG 5 cut(s) 69, 300, 320, 385, 390
NlaIV GGNNCC 1 cut(s) 204
NmuCI GTSAC 1 cut(s) 96
NsiI ATGCAT 2 cut(s) 220, 318
NspI RCATGY 1 cut(s) 390
PciI ACATGT 1 cut(s) 386
PkrI GCNGC 1 cut(s) 76
PscI ACATGT 1 cut(s) 386
PshBI ATTAAT 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 204
RseI CAYNNNNRTG 1 cut(s) 64
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 2 cut(s) 172, 268
SduI GDGCHC 2 cut(s) 381, 402
SetI ASST 2 cut(s) 41, 137
SfaNI GCATC 2 cut(s) 14, 205
SmiMI CAYNNNNRTG 1 cut(s) 64
Sse9I AATT 2 cut(s) 283, 372
StyI CCWWGG 1 cut(s) 206
TaqI TCGA 4 cut(s) 13, 165, 233, 306
TasI AATT 2 cut(s) 283, 372
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 2 cut(s) 250, 278
TseFI GTSAC 1 cut(s) 96
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 96
TspDTI ATGAA 2 cut(s) 127, 345
TspRI CASTG 2 cut(s) 250, 278
VneI GTGCAC 1 cut(s) 398
VspI ATTAAT 1 cut(s) 189
XapI RAATTY 1 cut(s) 283
XceI RCATGY 1 cut(s) 390
Zsp2I ATGCAT 2 cut(s) 220, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.