Rroxscaffold_6G00417850
ERF Family

Gamma-interferon-inducible lysosomal thiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003951
Physical Location & Seq
Reverse (-)
39454138 .. 39455729
1592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00417850.1

Sequence Viewer

Length: 501 bp
ATGGCCTCTGCTCTATTCTTCACTTGTCTGACCTGTTCAATGTTCCTGCTCACTATTCCTTGTTATGTTGCTAATCAGAAAGTTACTCTCTCTCTTTACTATGATTCTTTGAGCACATCTTGTGCAACCTTCATCGTCAAGAATCTTGCTAAGATTTTCGATGATGATCTCATCACCATTCTCAATCTCAGACTGGTTCCTTGGGGTGATGCATACGCCAACAAATCGAACAACAGCACCGCTTTCTGTCAGCATAGGCCAGATGGGTGTAAGTTGAATTCTCTGGAAGCATGCGCTATCGATGTTATGCATGATGTGAACAAGCACTTTGCTTTGATTTACTGCATAGAATTTCTGGCCATAGAGGGAAGGCACAAGGAGTGGGAAACTTGCTTCAGTTCATTGGGACTGCCTAAGAAACCCACTTTGAATTGCTACAACAGTCCAAATGCAACAAAGTGCAGCTTGAACAAAACTATGGCAACGAAACCATGCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 map04612
Pfam Domains
Protein Families
GILT

Protein Analysis

166

Amino Acids

18.53

Weight (kDa)

7.95

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 30 - 134 3.1e-25 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 240
AcoI YGGCCR 1 cut(s) 357
AcsI RAATTY 2 cut(s) 277, 350
AcuI CTGAAG 1 cut(s) 379
AgsI TTSAA 4 cut(s) 39, 277, 430, 469
AluBI AGCT 1 cut(s) 465
AluI AGCT 1 cut(s) 465
Alw21I GWGCWC 1 cut(s) 116
AoxI GGCC 3 cut(s) 3, 257, 357
ApeKI GCWGC 1 cut(s) 462
ApoI RAATTY 2 cut(s) 277, 350
AspLEI GCGC 1 cut(s) 296
AsuHPI GGTGA 2 cut(s) 166, 218
BalI TGGCCA 1 cut(s) 359
Bbv12I GWGCWC 1 cut(s) 116
BbvI GCAGC 1 cut(s) 474
BccI CCATC 1 cut(s) 257
BisI GCNGC 1 cut(s) 463
BlsI GCNGC 1 cut(s) 464
BmiI GGNNCC 1 cut(s) 198
BmsI GCATC 1 cut(s) 199
Bsa29I ATCGAT 1 cut(s) 300
BsaBI GATNNNNATC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 198
Bse8I GATNNNNATC 1 cut(s) 165
BseCI ATCGAT 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 200
BseJI GATNNNNATC 1 cut(s) 165
BseMII CTCAG 1 cut(s) 202
BseNI ACTGG 1 cut(s) 198
BseXI GCAGC 1 cut(s) 474
BsgI GTGCAG 1 cut(s) 481
BshFI GGCC 3 cut(s) 5, 259, 359
BshVI ATCGAT 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 116
BslFI GGGAC 1 cut(s) 420
BsmFI GGGAC 1 cut(s) 420
BsnI GGCC 3 cut(s) 5, 259, 359
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 1 cut(s) 240
BspANI GGCC 3 cut(s) 5, 259, 359
BspCNI CTCAG 1 cut(s) 201
BspDI ATCGAT 1 cut(s) 300
BspLI GGNNCC 1 cut(s) 198
BsrI ACTGG 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 1 cut(s) 166
BssT1I CCWWGG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 443
BstC8I GCNNGC 1 cut(s) 292
BstDEI CTNAG 3 cut(s) 150, 188, 414
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstNSI RCATGY 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 474
Bsu15I ATCGAT 1 cut(s) 300
BsuRI GGCC 3 cut(s) 5, 259, 359
BsuTUI ATCGAT 1 cut(s) 300
Cac8I GCNNGC 1 cut(s) 292
CfoI GCGC 1 cut(s) 296
ClaI ATCGAT 1 cut(s) 300
CviAII CATG 3 cut(s) 291, 311, 492
CviJI RGCY 4 cut(s) 5, 259, 359, 465
CviKI_1 RGCY 4 cut(s) 5, 259, 359, 465
DdeI CTNAG 3 cut(s) 150, 188, 414
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 357
Eco130I CCWWGG 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 379
EcoRI GAATTC 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 200
EcoT22I ATGCAT 2 cut(s) 214, 312
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 3 cut(s) 294, 314, 495
FalI AAGNNNNNCTT 2 cut(s) 449, 481
FaqI GGGAC 1 cut(s) 420
FatI CATG 3 cut(s) 290, 310, 491
Fnu4HI GCNGC 1 cut(s) 463
Fsp4HI GCNGC 1 cut(s) 463
GlaI GCGC 1 cut(s) 295
GluI GCNGC 1 cut(s) 463
HaeIII GGCC 3 cut(s) 5, 259, 359
HhaI GCGC 1 cut(s) 296
Hin1II CATG 3 cut(s) 294, 314, 495
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HinfI GANTC 2 cut(s) 104, 142
HphI GGTGA 2 cut(s) 166, 218
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 3 cut(s) 30, 78, 191
Hpy188III TCNNGA 2 cut(s) 139, 284
Hpy8I GTNNAC 1 cut(s) 319
HpyAV CCTTC 2 cut(s) 139, 363
HpyCH4III ACNGT 1 cut(s) 443
HpyCH4V TGCA 7 cut(s) 125, 212, 310, 345, 452, 462, 495
HpyF3I CTNAG 3 cut(s) 150, 188, 414
Hsp92II CATG 3 cut(s) 294, 314, 495
HspAI GCGC 1 cut(s) 294
Kzo9I GATC 1 cut(s) 166
LpnPI CCDG 6 cut(s) 46, 59, 179, 269, 273, 341
Lsp1109I GCAGC 1 cut(s) 474
LweI GCATC 1 cut(s) 199
MaeIII GTNAC 1 cut(s) 82
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 1 cut(s) 10
MhlI GDGCHC 1 cut(s) 116
MlsI TGGCCA 1 cut(s) 359
MluCI AATT 3 cut(s) 277, 350, 430
MluNI TGGCCA 1 cut(s) 359
MnlI CCTC 2 cut(s) 16, 358
Mox20I TGGCCA 1 cut(s) 359
Mph1103I ATGCAT 2 cut(s) 214, 312
MscI TGGCCA 1 cut(s) 359
Msp20I TGGCCA 1 cut(s) 359
NdeII GATC 1 cut(s) 166
NlaIII CATG 3 cut(s) 294, 314, 495
NlaIV GGNNCC 1 cut(s) 198
NsiI ATGCAT 2 cut(s) 214, 312
NspI RCATGY 1 cut(s) 294
PaeI GCATGC 1 cut(s) 294
PfeI GAWTC 2 cut(s) 104, 142
PkrI GCNGC 1 cut(s) 464
PspN4I GGNNCC 1 cut(s) 198
SatI GCNGC 1 cut(s) 463
Sau3AI GATC 1 cut(s) 166
SduI GDGCHC 1 cut(s) 116
SetI ASST 4 cut(s) 35, 131, 467, 500
SfaNI GCATC 1 cut(s) 199
SphI GCATGC 1 cut(s) 294
Sse9I AATT 3 cut(s) 277, 350, 430
SsiI CCGC 1 cut(s) 240
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 1 cut(s) 443
TaqI TCGA 3 cut(s) 159, 227, 300
TasI AATT 3 cut(s) 277, 350, 430
TfiI GAWTC 2 cut(s) 104, 142
TseI GCWGC 1 cut(s) 462
TspDTI ATGAA 2 cut(s) 121, 390
XapI RAATTY 2 cut(s) 277, 350
XceI RCATGY 1 cut(s) 294
Zsp2I ATGCAT 2 cut(s) 214, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.