RchiOBHm_Chr7g0217891
ERF Family

Gamma-interferon-inducible lysosomal thiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0003951
Physical Location & Seq
Forward (+)
35811785 .. 35812821
1037 bp
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UTR
Exon/CDS
Intron
PRQ19502

Sequence Viewer

Length: 654 bp
ATGGCCTCTGCTCTATTCTTCACTTGTCTCATTACCTGTTCAGTGTTCTTGCTTACTATTCCTTGTTATGTTGCTAATCAGAAAGTTACTCTCTCGCTTTACTATGACTCTTTGAGCACATCTTGTGCTACCTTCATCGTCAAGAATCTTGCTAAGATTTTCGATGATGATCTCATCACCATTCTCAATCTCAGACTGGTTCCTTGGGGTGATGCATACGCCAACAAATCGAACAACAGCACCGCTTTCTGTCAGCATAGGCCAGATGGGTGTAAGTTGAATTTTCTGGAAGCATGCGCTATCGATGTTATGCATGATGTGAACAAGCACTTTGCTTTGATTTACTGCATAGAATTTTTGGCCATAGAGGGAAGGCACAAGGAGTGGGAAACTTGCTTCAGTTCATTGGGACTGCCTAAGAAACCCACTTTGGATTGCTACAACAGTTCAAATGCAACAAAGCTTGAACAAAACTATGGCAATGAAACCATGCACCTCAATCCACCTCTAAAGTTTGTACCGTGGCTGGTTCTGAATGATCAACCTATTGGAAATGACTATGAAAATTTTGCTGGCTATGTGTGCAAGGCTTACAAAGGTAACATTGTGCCCGTGGCATGTCAGTCTGTACATTTGAAGCAGAAGACAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 map04612
Pfam Domains
Protein Families
GILT

Protein Analysis

217

Amino Acids

24.44

Weight (kDa)

6.29

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 31 - 135 1.1e-24 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 243
AcoI YGGCCR 1 cut(s) 360
AcsI RAATTY 3 cut(s) 280, 353, 565
AcuI CTGAAG 1 cut(s) 382
AfaI GTAC 2 cut(s) 519, 630
AgsI TTSAA 4 cut(s) 280, 450, 467, 637
AjuI GAANNNNNNNTTGG 2 cut(s) 413, 445
AluBI AGCT 1 cut(s) 463
AluI AGCT 1 cut(s) 463
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 32
AoxI GGCC 3 cut(s) 3, 260, 360
ApoI RAATTY 3 cut(s) 280, 353, 565
AspLEI GCGC 1 cut(s) 299
AsuHPI GGTGA 2 cut(s) 169, 221
BaeGI GKGCMC 1 cut(s) 612
BalI TGGCCA 1 cut(s) 362
BbsI GAAGAC 1 cut(s) 650
Bbv12I GWGCWC 1 cut(s) 119
BccI CCATC 1 cut(s) 260
BclI TGATCA 1 cut(s) 538
BcoDI GTCTC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 201
BmsI GCATC 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 650
Bsa29I ATCGAT 1 cut(s) 303
BsaBI GATNNNNATC 1 cut(s) 168
BsaJI CCNNGG 3 cut(s) 203, 521, 612
Bse1I ACTGG 1 cut(s) 201
Bse3DI GCAATG 1 cut(s) 487
Bse8I GATNNNNATC 1 cut(s) 168
BseCI ATCGAT 1 cut(s) 303
BseDI CCNNGG 3 cut(s) 203, 521, 612
BseJI GATNNNNATC 1 cut(s) 168
BseMI GCAATG 1 cut(s) 487
BseMII CTCAG 1 cut(s) 205
BseNI ACTGG 1 cut(s) 201
BseSI GKGCMC 1 cut(s) 612
BshFI GGCC 3 cut(s) 5, 262, 362
BshVI ATCGAT 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 119
BslFI GGGAC 1 cut(s) 423
BsmAI GTCTC 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 423
BsnI GGCC 3 cut(s) 5, 262, 362
Bsp1286I GDGCHC 2 cut(s) 119, 612
Bsp1407I TGTACA 1 cut(s) 628
Bsp143I GATC 2 cut(s) 169, 538
BspACI CCGC 1 cut(s) 243
BspANI GGCC 3 cut(s) 5, 262, 362
BspCNI CTCAG 1 cut(s) 204
BspDI ATCGAT 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 201
BsrDI GCAATG 1 cut(s) 487
BsrGI TGTACA 1 cut(s) 628
BsrI ACTGG 1 cut(s) 201
BssECI CCNNGG 3 cut(s) 203, 521, 612
BssMI GATC 2 cut(s) 169, 538
BssT1I CCWWGG 1 cut(s) 203
Bst4CI ACNGT 2 cut(s) 446, 522
BstAUI TGTACA 1 cut(s) 628
BstC8I GCNNGC 2 cut(s) 295, 574
BstDEI CTNAG 3 cut(s) 153, 191, 417
BstDSI CCRYGG 2 cut(s) 521, 612
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 2 cut(s) 172, 541
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 2 cut(s) 169, 538
BstMWI GCNNNNNNNGC 1 cut(s) 582
BstNSI RCATGY 2 cut(s) 297, 621
BstSLI GKGCMC 1 cut(s) 612
BstV2I GAAGAC 1 cut(s) 650
Bsu15I ATCGAT 1 cut(s) 303
BsuRI GGCC 3 cut(s) 5, 262, 362
BsuTUI ATCGAT 1 cut(s) 303
BtgI CCRYGG 2 cut(s) 521, 612
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 2 cut(s) 295, 574
CfoI GCGC 1 cut(s) 299
ClaI ATCGAT 1 cut(s) 303
Csp6I GTAC 2 cut(s) 518, 629
CviAII CATG 4 cut(s) 294, 314, 490, 618
CviJI RGCY 7 cut(s) 5, 262, 362, 463, 526, 576, 590
CviKI_1 RGCY 7 cut(s) 5, 262, 362, 463, 526, 576, 590
CviQI GTAC 2 cut(s) 518, 629
DdeI CTNAG 3 cut(s) 153, 191, 417
DpnI GATC 2 cut(s) 171, 540
DpnII GATC 2 cut(s) 169, 538
EaeI YGGCCR 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 203
EcoT22I ATGCAT 2 cut(s) 217, 315
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 4 cut(s) 297, 317, 493, 621
FaqI GGGAC 1 cut(s) 423
FatI CATG 4 cut(s) 293, 313, 489, 617
FbaI TGATCA 1 cut(s) 538
GlaI GCGC 1 cut(s) 298
HaeIII GGCC 3 cut(s) 5, 262, 362
HhaI GCGC 1 cut(s) 299
Hin1II CATG 4 cut(s) 297, 317, 493, 621
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HindIII AAGCTT 1 cut(s) 461
HinfI GANTC 2 cut(s) 107, 145
HphI GGTGA 2 cut(s) 169, 221
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 3 cut(s) 81, 194, 534
Hpy188III TCNNGA 2 cut(s) 142, 287
Hpy8I GTNNAC 1 cut(s) 322
HpyAV CCTTC 2 cut(s) 142, 366
HpyCH4III ACNGT 2 cut(s) 446, 522
HpyCH4V TGCA 6 cut(s) 215, 313, 348, 455, 493, 585
HpyF10VI GCNNNNNNNGC 1 cut(s) 582
HpyF3I CTNAG 3 cut(s) 153, 191, 417
Hsp92II CATG 4 cut(s) 297, 317, 493, 621
HspAI GCGC 1 cut(s) 297
Ksp22I TGATCA 1 cut(s) 538
Kzo9I GATC 2 cut(s) 169, 538
LpnPI CCDG 6 cut(s) 49, 182, 272, 276, 512, 558
LweI GCATC 1 cut(s) 202
MaeIII GTNAC 2 cut(s) 85, 599
MalI GATC 2 cut(s) 171, 540
MboI GATC 2 cut(s) 169, 538
MboII GAAGA 1 cut(s) 10
MhlI GDGCHC 2 cut(s) 119, 612
MlsI TGGCCA 1 cut(s) 362
MluCI AATT 3 cut(s) 280, 353, 565
MluNI TGGCCA 1 cut(s) 362
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 4 cut(s) 16, 361, 506, 516
Mox20I TGGCCA 1 cut(s) 362
Mph1103I ATGCAT 2 cut(s) 217, 315
MscI TGGCCA 1 cut(s) 362
Msp20I TGGCCA 1 cut(s) 362
MwoI GCNNNNNNNGC 1 cut(s) 582
NdeII GATC 2 cut(s) 169, 538
NlaIII CATG 4 cut(s) 297, 317, 493, 621
NlaIV GGNNCC 1 cut(s) 201
NsiI ATGCAT 2 cut(s) 217, 315
NspI RCATGY 2 cut(s) 297, 621
PaeI GCATGC 1 cut(s) 297
PfeI GAWTC 1 cut(s) 145
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 201
RsaI GTAC 2 cut(s) 519, 630
RsaNI GTAC 2 cut(s) 518, 629
Sau3AI GATC 2 cut(s) 169, 538
SchI GAGTC 1 cut(s) 101
SduI GDGCHC 2 cut(s) 119, 612
SetI ASST 7 cut(s) 38, 134, 465, 498, 508, 547, 601
SfaNI GCATC 1 cut(s) 202
SphI GCATGC 1 cut(s) 297
Sse9I AATT 3 cut(s) 280, 353, 565
SsiI CCGC 1 cut(s) 243
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 2 cut(s) 446, 522
TaqI TCGA 3 cut(s) 162, 230, 303
TasI AATT 3 cut(s) 280, 353, 565
TatI WGTACW 1 cut(s) 628
TfiI GAWTC 1 cut(s) 145
TscAI CASTG 1 cut(s) 48
TspDTI ATGAA 4 cut(s) 124, 393, 498, 576
TspRI CASTG 1 cut(s) 48
XapI RAATTY 3 cut(s) 280, 353, 565
XceI RCATGY 2 cut(s) 297, 621
Zsp2I ATGCAT 2 cut(s) 217, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.