RLG00000024885
ERF Family

Gamma-interferon-inducible lysosomal thiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0003951
Physical Location & Seq
Reverse (-)
40054593 .. 40055283
691 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024885

Sequence Viewer

Length: 501 bp
ATGGCCTCTGCTCTATTCTTCACTTGTCTGACCTGTTCAATGTTCTTGCTCACTATTCCTTGTTATGTTGCTAATCAGAAAGTTACTCTCTCGCTTTACTATGACTCTTTGAGCACATCTTGTGCAACCTTCATCGTCAAGAATCTTGCTAAGATTTTCGATGATGATCTCATCACCATTCTCAATCTCAGACTGGTTCCTTGTGGTGATGCATACGCCAACAAATCGAACAACAGCACCGCTTTCTGTCAGCATAGGCCAGATGGGTGTAAGTTGAATTCTCTGGAAGCATGCGCTATCGATGTTATGCATGATGTGAACAAGCACTTTGCTTTGATTTACTGCATAGAATTTCTGGCCATAGAGGGAAGGCACAAGGAGTGGGAAACTTGCTTCAGTTCATTGGGACTGCCTAAGAAACCCACTTTGAATTGCTACAACAGTTCAAATGCAACAAAGGTTTCATATTTAATCCTATCTACAAGAATTCATGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 map04612
Pfam Domains
Protein Families
GILT

Protein Analysis

167

Amino Acids

18.57

Weight (kDa)

6.49

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 30 - 134 1.1e-24 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 240
AcoI YGGCCR 1 cut(s) 357
AcsI RAATTY 3 cut(s) 277, 350, 486
AcuI CTGAAG 1 cut(s) 379
AgsI TTSAA 4 cut(s) 39, 277, 430, 447
Alw21I GWGCWC 1 cut(s) 116
AoxI GGCC 3 cut(s) 3, 257, 357
ApoI RAATTY 3 cut(s) 277, 350, 486
AspLEI GCGC 1 cut(s) 296
AsuHPI GGTGA 2 cut(s) 166, 218
BalI TGGCCA 1 cut(s) 359
Bbv12I GWGCWC 1 cut(s) 116
BccI CCATC 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 198
BmsI GCATC 1 cut(s) 199
Bsa29I ATCGAT 1 cut(s) 300
BsaBI GATNNNNATC 1 cut(s) 165
Bse1I ACTGG 1 cut(s) 198
Bse8I GATNNNNATC 1 cut(s) 165
BseCI ATCGAT 1 cut(s) 300
BseJI GATNNNNATC 1 cut(s) 165
BseMII CTCAG 1 cut(s) 202
BseNI ACTGG 1 cut(s) 198
BshFI GGCC 3 cut(s) 5, 259, 359
BshVI ATCGAT 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 116
BslFI GGGAC 1 cut(s) 420
BsmFI GGGAC 1 cut(s) 420
BsnI GGCC 3 cut(s) 5, 259, 359
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 1 cut(s) 240
BspANI GGCC 3 cut(s) 5, 259, 359
BspCNI CTCAG 1 cut(s) 201
BspDI ATCGAT 1 cut(s) 300
BspHI TCATGA 1 cut(s) 490
BspLI GGNNCC 1 cut(s) 198
BsrI ACTGG 1 cut(s) 198
BssMI GATC 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 443
BstC8I GCNNGC 1 cut(s) 292
BstDEI CTNAG 3 cut(s) 150, 188, 414
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstNSI RCATGY 1 cut(s) 294
Bsu15I ATCGAT 1 cut(s) 300
BsuRI GGCC 3 cut(s) 5, 259, 359
BsuTUI ATCGAT 1 cut(s) 300
Cac8I GCNNGC 1 cut(s) 292
CciI TCATGA 1 cut(s) 490
CfoI GCGC 1 cut(s) 296
ClaI ATCGAT 1 cut(s) 300
CviAII CATG 3 cut(s) 291, 311, 491
CviJI RGCY 3 cut(s) 5, 259, 359
CviKI_1 RGCY 3 cut(s) 5, 259, 359
DdeI CTNAG 3 cut(s) 150, 188, 414
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 357
Eco57I CTGAAG 1 cut(s) 379
EcoRI GAATTC 2 cut(s) 277, 486
EcoT22I ATGCAT 2 cut(s) 214, 312
FaeI CATG 3 cut(s) 294, 314, 494
FaqI GGGAC 1 cut(s) 420
FatI CATG 3 cut(s) 290, 310, 490
GlaI GCGC 1 cut(s) 295
HaeIII GGCC 3 cut(s) 5, 259, 359
HhaI GCGC 1 cut(s) 296
Hin1II CATG 3 cut(s) 294, 314, 494
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HinfI GANTC 2 cut(s) 104, 142
HphI GGTGA 2 cut(s) 166, 218
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 3 cut(s) 30, 78, 191
Hpy188III TCNNGA 3 cut(s) 139, 284, 491
Hpy8I GTNNAC 1 cut(s) 319
HpyAV CCTTC 2 cut(s) 139, 363
HpyCH4III ACNGT 1 cut(s) 443
HpyCH4V TGCA 5 cut(s) 125, 212, 310, 345, 452
HpyF3I CTNAG 3 cut(s) 150, 188, 414
Hsp92II CATG 3 cut(s) 294, 314, 494
HspAI GCGC 1 cut(s) 294
Kzo9I GATC 1 cut(s) 166
LpnPI CCDG 5 cut(s) 46, 179, 269, 273, 341
LweI GCATC 1 cut(s) 199
MaeIII GTNAC 1 cut(s) 82
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 1 cut(s) 10
MhlI GDGCHC 1 cut(s) 116
MlsI TGGCCA 1 cut(s) 359
MluCI AATT 4 cut(s) 277, 350, 430, 486
MluNI TGGCCA 1 cut(s) 359
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 2 cut(s) 16, 358
Mox20I TGGCCA 1 cut(s) 359
Mph1103I ATGCAT 2 cut(s) 214, 312
MscI TGGCCA 1 cut(s) 359
MseI TTAA 2 cut(s) 470, 499
Msp20I TGGCCA 1 cut(s) 359
NdeII GATC 1 cut(s) 166
NlaIII CATG 3 cut(s) 294, 314, 494
NlaIV GGNNCC 1 cut(s) 198
NsiI ATGCAT 2 cut(s) 214, 312
NspI RCATGY 1 cut(s) 294
PaeI GCATGC 1 cut(s) 294
PagI TCATGA 1 cut(s) 490
PfeI GAWTC 1 cut(s) 142
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PspN4I GGNNCC 1 cut(s) 198
SaqAI TTAA 2 cut(s) 470, 499
Sau3AI GATC 1 cut(s) 166
SchI GAGTC 1 cut(s) 98
SduI GDGCHC 1 cut(s) 116
SetI ASST 3 cut(s) 35, 131, 462
SfaNI GCATC 1 cut(s) 199
SphI GCATGC 1 cut(s) 294
Sse9I AATT 4 cut(s) 277, 350, 430, 486
SsiI CCGC 1 cut(s) 240
TaaI ACNGT 1 cut(s) 443
TaqI TCGA 3 cut(s) 159, 227, 300
TasI AATT 4 cut(s) 277, 350, 430, 486
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 2 cut(s) 470, 499
Tru9I TTAA 2 cut(s) 470, 499
TspDTI ATGAA 4 cut(s) 121, 390, 453, 479
XapI RAATTY 3 cut(s) 277, 350, 486
XceI RCATGY 1 cut(s) 294
Zsp2I ATGCAT 2 cut(s) 214, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.