Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002546

Physical Location & Seq

Genomic Coordinates Reverse (-)

16780727 .. 16783966

Gene Structure 3240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g23031.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1614 bp

ATGAATAGCGACAGCTTCAGATTTCCTTATTCTGATCAAAATTTGGATGACTTCAATAACGATACTTTTCCGAATGCCAACTATCCATTTTCATCACCATTTCCTTTGGCAAGTGATGATGGTTTTATTACTGGTGTAAACAACAGCACTACTATTGGAGAGAACCAAATTAGTGATGATCTCATGAACCAAGGGCAAAATGATAGTGGAAGTGGCACAAAATTTGCAGAAATGAAATGCAAACGTCGCCCTACTAATAAAAAGTGTAAACAAACATTTGGTGAGAAAAGTGATAATGTGCTCGACCAAGAGAAGAATATAGCAGCTGGAAGTAGACTAAATTCTGTGGAAGTGCAACGTAATTGTCCCCCTACTAAAAAGGATAAAAAAGCATCTGGCGAGAGAAGTTCTAGGTTTCGCGGAGTTACTAGGTACCCAGGACATTTTGAAGCATTTCTATGGGATAATTCTGATCCACAAGTGAAAGGCAAGACAGGCGGATTTCATGAAGAAGAGCAAGCTGCCAGAGCACATGATCTAGCTTCTTTGAAGTATTGGGGCAAATCTACCTCATTAAACTTCCCTGTGACTGATTACGAGAAGGAAATAGAGGAGATGGAAGAATATACAAAGAAAGACTACATGCTACATATCCGAAGGTATGGAGAGAATGCTAGATGGCAAGCCAGGTTGGGAAAAGGCAAAGATACAAAAGGCCTCTATTTGGGATCATTTGATGCCCAGGAGGAAGCAGCAAGGGCTTATGATGTTGCAGTAATAAAATATAGAGGAGGATGGGATGCAGTGACTAATTTTGATATAAGTAACTACGATGTCCAAGATATTCTTGACAACCCATATATTCCAATCGAAAAAGGTGCTTCAAAGTTCATAAGAAGGACTGCAGCTGATGATATCCTGGAGAGCAGAAGAACCACTAACAATGGTACCGTTTCACAACAACATGTTGACAGCTCCAGTAGTTATAAACCTGATACAACCCTAGTAGCCCCGCCATCATTTGAATCAACAGTAGTGCAAACCCTAGATCAAACCCTTAGCTATTCTAACCCAGAACAACAATATCCATTCCCCTCCCTCAATCCTAACCAAGATAATGAGCAGATCCAAATTAACCAATTCCCGCAGGATCTGCAGTACTTTAACACCCCTAACTTTGAATATGATCATCTTCCTTTCACAATAAACCCTAGCTTCCATAGCTGGGGAAACTATGGTAGAAATGAGCTGATAGAGCCATCACTCCAGTTTCAACCTATTCTAACAACAGAAAATCACAACTTTCAGAATGATAATTCGCAGCCCCACCTACTTCAAAACCCTAGCTCATCCAGTAGTCAATTCTCCCAGAACCCTAATTGTCAACGTGAAAAGCCTAATGTTTTGAGTGACTTGGCTGATCTTCAAAGTGGTAGTGATATCAGGGAAGTTCCCAGTAGTCAGGAAGCAGTGGCGAGCTTTGCAATGAGGGGGACGGATGAGATCAGTCACGACGATTGCCCCAATGAGAGAAATGGAATCTTTTCTGAAGTCGACTTTGGGTTGGAAGAGTTCGAAAGGTTCTTAATGACAATTGACACTTCTGACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010449 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0035266 GO:0040007 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098727 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

538

Amino Acids

60.92

Weight (kDa)

4.78

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23031
malus_domestica	MD17G1047700.v1.1
prunus_persica	Prupe.7G069100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480851 RchiOBHm_Chr3g0480891
rosa_laevigata	RLG00000023444 RLG00000023445 RLG00000023447 RLG00000034573
rosa_multiflora	Rmu_sc0004058.1_g000024 Rmu_sc0004838.1_g000011 Rmu_sc0006028.1_g000028 Rmu_sc0012984.1_g000002 Rmu_sc0012984.1_g000013
rosa_roxburghii	Rroxscaffold_1G00032960 Rroxscaffold_6G00400920 Rroxscaffold_6G00400960
rosa_rugosa	Rorug03G0186900 Rorug03G0187000 Rorug03G0187000 Rorug03G0187200 Rorug03G0187300 Rorug05G0241400
rosa_samantha	Rh3AG238500 Rh3AG238600 Rh3BG272000 Rh3BG272500 Rh3BG272700 Rh3BG272800 Rh3CG267800 Rh3CG268300 Rh3DG264100 Rh3DG264400 Rh5AG321600 Rh5BG331900 Rh5CG357200 Rh5DG343700
rosa_wichuraiana	Rw0G006160 Rw3G021350 Rw3G021360 Rw5G030350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	987
Acc65I	GGTACC	2 cut(s)	432, 947
AccB1I	GGYRCC	2 cut(s)	432, 947
AccI	GTMKAC	2 cut(s)	334, 1554
AccII	CGCG	1 cut(s)	420
AciI	CCGC	4 cut(s)	420, 498, 1013, 1145
AclWI	GGATC	4 cut(s)	467, 736, 1120, 1158
AcsI	RAATTY	3 cut(s)	40, 221, 340
AcuI	CTGAAG	1 cut(s)	1569
AfaI	GTAC	3 cut(s)	434, 949, 1160
AfiI	CCNNNNNNNGG	2 cut(s)	724, 1225
AflIII	ACRYGT	1 cut(s)	964
AgsI	TTSAA	9 cut(s)	55, 449, 550, 885, 1025, 1181, 1274, 1337, 1427
AjnI	CCWGG	4 cut(s)	436, 686, 741, 918
AjuI	GAANNNNNNNTTGG	2 cut(s)	1542, 1574
Alw21I	GWGCWC	2 cut(s)	303, 532
AlwI	GGATC	4 cut(s)	467, 736, 1120, 1158
AlwNI	CAGNNNCTG	1 cut(s)	1153
AoxI	GGCC	1 cut(s)	715
ApeKI	GCWGC	5 cut(s)	323, 521, 752, 905, 1321
ApoI	RAATTY	3 cut(s)	40, 221, 340
Asp700I	GAANNNNTTC	2 cut(s)	453, 1543
Asp718I	GGTACC	2 cut(s)	432, 947
AsuHPI	GGTGA	2 cut(s)	87, 293
AsuII	TTCGAA	1 cut(s)	1575
BaeI	ACNNNNGTAYC	2 cut(s)	931, 964
BanI	GGYRCC	2 cut(s)	432, 947
Bbv12I	GWGCWC	2 cut(s)	303, 532
BbvI	GCAGC	5 cut(s)	335, 508, 764, 917, 1333
BccI	CCATC	6 cut(s)	113, 610, 672, 789, 1024, 1267
BcgI	CGANNNNNNTGC	2 cut(s)	860, 894
BciT130I	CCWGG	4 cut(s)	438, 688, 743, 920
BclI	TGATCA	2 cut(s)	34, 1186
BfaI	CTAG	8 cut(s)	411, 429, 539, 675, 1004, 1046, 1212, 1344
BfmI	CTRYAG	2 cut(s)	903, 1154
BisI	GCNGC	5 cut(s)	324, 522, 753, 906, 1322
BlsI	GCNGC	5 cut(s)	325, 523, 754, 907, 1323
BmcAI	AGTACT	1 cut(s)	1160
Bme1390I	CCNGG	4 cut(s)	438, 688, 743, 920
BmiI	GGNNCC	2 cut(s)	434, 949
BmrFI	CCNGG	4 cut(s)	438, 688, 743, 920
BmrI	ACTGGG	1 cut(s)	1449
BmsI	GCATC	3 cut(s)	401, 727, 790
BmuI	ACTGGG	1 cut(s)	1449
BpmI	CTGGAG	3 cut(s)	941, 961, 1250
Bpu10I	CCTNAGC	1 cut(s)	1058
Bpu14I	TTCGAA	1 cut(s)	1575
BsaJI	CCNNGG	3 cut(s)	190, 436, 741
Bsc4I	CCNNNNNNNGG	2 cut(s)	724, 1225
Bse1I	ACTGG	5 cut(s)	136, 978, 1267, 1353, 1455
Bse3DI	GCAATG	1 cut(s)	1491
BseBI	CCWGG	4 cut(s)	438, 688, 743, 920
BseDI	CCNNGG	3 cut(s)	190, 436, 741
BseGI	GGATG	5 cut(s)	52, 800, 805, 1349, 1504
BseLI	CCNNNNNNNGG	2 cut(s)	724, 1225
BseMI	GCAATG	1 cut(s)	1491
BseNI	ACTGG	5 cut(s)	136, 978, 1267, 1353, 1455
BseRI	GAGGAG	2 cut(s)	626, 804
BseXI	GCAGC	5 cut(s)	335, 508, 764, 917, 1333
BseYI	CCCAGC	1 cut(s)	1224
Bsh1236I	CGCG	1 cut(s)	420
BshFI	GGCC	1 cut(s)	717
BshNI	GGYRCC	2 cut(s)	432, 947
BsiHKAI	GWGCWC	2 cut(s)	303, 532
BslFI	GGGAC	2 cut(s)	351, 1507
BslI	CCNNNNNNNGG	2 cut(s)	724, 1225
BsmFI	GGGAC	2 cut(s)	351, 1507
BsmI	GAATGC	2 cut(s)	79, 676
BsnI	GGCC	1 cut(s)	717
Bsp119I	TTCGAA	1 cut(s)	1575
Bsp1286I	GDGCHC	2 cut(s)	303, 532
BspACI	CCGC	4 cut(s)	420, 498, 1013, 1145
BspANI	GGCC	1 cut(s)	717
BspFNI	CGCG	1 cut(s)	420
BspHI	TCATGA	2 cut(s)	183, 505
BspLI	GGNNCC	2 cut(s)	434, 949
BspMAI	CTGCAG	2 cut(s)	907, 1158
BspPI	GGATC	4 cut(s)	467, 736, 1120, 1158
BspQI	GCTCTTC	1 cut(s)	507
BspT104I	TTCGAA	1 cut(s)	1575
BspT107I	GGYRCC	2 cut(s)	432, 947
BsrDI	GCAATG	1 cut(s)	1491
BsrI	ACTGG	5 cut(s)	136, 978, 1267, 1353, 1455
BssECI	CCNNGG	3 cut(s)	190, 436, 741
BssT1I	CCWWGG	1 cut(s)	190
Bst2UI	CCWGG	4 cut(s)	438, 688, 743, 920
Bst4CI	ACNGT	2 cut(s)	952, 1033
Bst6I	CTCTTC	2 cut(s)	507, 1563
BstAPI	GCANNNNNTGC	1 cut(s)	1153
BstBI	TTCGAA	1 cut(s)	1575
BstC8I	GCNNGC	3 cut(s)	519, 684, 1477
BstDEI	CTNAG	1 cut(s)	1058
BstF5I	GGATG	5 cut(s)	52, 800, 805, 1349, 1504
BstFNI	CGCG	1 cut(s)	420
BstMWI	GCNNNNNNNGC	8 cut(s)	246, 495, 527, 758, 1153, 1221, 1255, 1481
BstNI	CCWGG	4 cut(s)	438, 688, 743, 920
BstNSI	RCATGY	2 cut(s)	646, 968
BstSCI	CCNGG	4 cut(s)	436, 686, 741, 918
BstSFI	CTRYAG	2 cut(s)	903, 1154
BstUI	CGCG	1 cut(s)	420
BstV1I	GCAGC	5 cut(s)	335, 508, 764, 917, 1333
BstX2I	RGATCY	2 cut(s)	1125, 1150
BstYI	RGATCY	2 cut(s)	1125, 1150
BsuRI	GGCC	1 cut(s)	717
BtsCI	GGATG	5 cut(s)	52, 800, 805, 1349, 1504
BtsI	GCAGTG	2 cut(s)	810, 1476
BtsIMutI	CAGTG	2 cut(s)	810, 1476
Cac8I	GCNNGC	3 cut(s)	519, 684, 1477
CaiI	CAGNNNCTG	1 cut(s)	1153
CciI	TCATGA	2 cut(s)	183, 505
Csp6I	GTAC	3 cut(s)	433, 948, 1159
CviAII	CATG	5 cut(s)	184, 506, 533, 643, 965
CviQI	GTAC	3 cut(s)	433, 948, 1159
DdeI	CTNAG	1 cut(s)	1058
Eam1104I	CTCTTC	2 cut(s)	507, 1563
EarI	CTCTTC	2 cut(s)	507, 1563
EciI	GGCGGA	1 cut(s)	513
Eco130I	CCWWGG	1 cut(s)	190
Eco147I	AGGCCT	1 cut(s)	717
Eco32I	GATATC	2 cut(s)	916, 1441
Eco57I	CTGAAG	1 cut(s)	1569
EcoRII	CCWGG	4 cut(s)	436, 686, 741, 918
EcoRV	GATATC	2 cut(s)	916, 1441
EcoT14I	CCWWGG	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	5 cut(s)	187, 509, 536, 646, 968
FalI	AAGNNNNNCTT	2 cut(s)	831, 863
FaqI	GGGAC	2 cut(s)	351, 1507
FatI	CATG	5 cut(s)	183, 505, 532, 642, 964
FauI	CCCGC	2 cut(s)	1020, 1152
FbaI	TGATCA	2 cut(s)	34, 1186
FblI	GTMKAC	2 cut(s)	334, 1554
Fnu4HI	GCNGC	5 cut(s)	324, 522, 753, 906, 1322
FokI	GGATG	5 cut(s)	59, 807, 812, 1336, 1511
Fsp4HI	GCNGC	5 cut(s)	324, 522, 753, 906, 1322
FspBI	CTAG	8 cut(s)	411, 429, 539, 675, 1004, 1046, 1212, 1344
GluI	GCNGC	5 cut(s)	324, 522, 753, 906, 1322
GsaI	CCCAGC	1 cut(s)	1228
GsuI	CTGGAG	3 cut(s)	941, 961, 1250
HaeIII	GGCC	1 cut(s)	717
Hin1II	CATG	5 cut(s)	187, 509, 536, 646, 968
HincII	GTYRAC	3 cut(s)	970, 1385, 1555
HindII	GTYRAC	3 cut(s)	970, 1385, 1555
HinfI	GANTC	2 cut(s)	1025, 1539
HphI	GGTGA	2 cut(s)	87, 293
Hpy166II	GTNNAC	6 cut(s)	139, 269, 335, 970, 1385, 1555
Hpy188I	TCNGA	8 cut(s)	20, 34, 72, 472, 656, 1308, 1549, 1606
Hpy188III	TCNNGA	5 cut(s)	184, 506, 848, 1463, 1511
Hpy8I	GTNNAC	6 cut(s)	139, 269, 335, 970, 1385, 1555
Hpy99I	CGWCG	2 cut(s)	249, 1517
HpyAV	CCTTC	3 cut(s)	595, 651, 891
HpyCH4III	ACNGT	2 cut(s)	952, 1033
HpyCH4IV	ACGT	3 cut(s)	244, 358, 1387
HpyCH4V	TGCA	9 cut(s)	227, 240, 355, 773, 803, 905, 1039, 1156, 1484
HpyF10VI	GCNNNNNNNGC	8 cut(s)	246, 495, 527, 758, 1153, 1221, 1255, 1481
HpyF3I	CTNAG	1 cut(s)	1058
HpySE526I	ACGT	3 cut(s)	244, 358, 1387
Hsp92II	CATG	5 cut(s)	187, 509, 536, 646, 968
KpnI	GGTACC	2 cut(s)	436, 951
Ksp22I	TGATCA	2 cut(s)	34, 1186
LguI	GCTCTTC	1 cut(s)	507
LmnI	GCTCC	1 cut(s)	980
Lsp1109I	GCAGC	5 cut(s)	335, 508, 764, 917, 1333
LweI	GCATC	3 cut(s)	401, 727, 790
MaeI	CTAG	8 cut(s)	411, 429, 539, 675, 1004, 1046, 1212, 1344
MaeII	ACGT	3 cut(s)	244, 358, 1387
MaeIII	GTNAC	6 cut(s)	424, 586, 805, 824, 1409, 1508
MboII	GAAGA	8 cut(s)	325, 521, 524, 632, 942, 1184, 1415, 1580
MfeI	CAATTG	1 cut(s)	1593
MflI	RGATCY	2 cut(s)	1125, 1150
MhlI	GDGCHC	2 cut(s)	303, 532
MmeI	TCCRAC	1 cut(s)	1545
MnlI	CCTC	9 cut(s)	580, 604, 728, 739, 782, 785, 1105, 1109, 1482
MroXI	GAANNNNTTC	2 cut(s)	453, 1543
MseI	TTAA	4 cut(s)	575, 1134, 1164, 1586
MslI	CAYNNNNRTG	1 cut(s)	457
MspA1I	CMGCKG	2 cut(s)	326, 908
MspR9I	CCNGG	4 cut(s)	438, 688, 743, 920
MunI	CAATTG	1 cut(s)	1593
Mva1269I	GAATGC	2 cut(s)	79, 676
MvaI	CCWGG	4 cut(s)	438, 688, 743, 920
MvnI	CGCG	1 cut(s)	420
MwoI	GCNNNNNNNGC	8 cut(s)	246, 495, 527, 758, 1153, 1221, 1255, 1481
NlaIII	CATG	5 cut(s)	187, 509, 536, 646, 968
NlaIV	GGNNCC	2 cut(s)	434, 949
NmuCI	GTSAC	4 cut(s)	586, 805, 1409, 1508
NspI	RCATGY	2 cut(s)	646, 968
NspV	TTCGAA	1 cut(s)	1575
PagI	TCATGA	2 cut(s)	183, 505
PceI	AGGCCT	1 cut(s)	717
PciI	ACATGT	1 cut(s)	964
PciSI	GCTCTTC	1 cut(s)	507
PctI	GAATGC	2 cut(s)	79, 676
PdmI	GAANNNNTTC	2 cut(s)	453, 1543
PfeI	GAWTC	2 cut(s)	1025, 1539
PfoI	TCCNGGA	1 cut(s)	918
PkrI	GCNGC	5 cut(s)	325, 523, 754, 907, 1323
PscI	ACATGT	1 cut(s)	964
PsiI	TTATAA	1 cut(s)	987
Psp6I	CCWGG	4 cut(s)	436, 686, 741, 918
PspFI	CCCAGC	1 cut(s)	1224
PspGI	CCWGG	4 cut(s)	436, 686, 741, 918
PspN4I	GGNNCC	2 cut(s)	434, 949
PstI	CTGCAG	2 cut(s)	907, 1158
PstNI	CAGNNNCTG	1 cut(s)	1153
PsuI	RGATCY	2 cut(s)	1125, 1150
PvuII	CAGCTG	2 cut(s)	326, 908
RsaI	GTAC	3 cut(s)	434, 949, 1160
RsaNI	GTAC	3 cut(s)	433, 948, 1159
RseI	CAYNNNNRTG	1 cut(s)	457
SalI	GTCGAC	1 cut(s)	1553
SapI	GCTCTTC	1 cut(s)	507
SaqAI	TTAA	4 cut(s)	575, 1134, 1164, 1586
SatI	GCNGC	5 cut(s)	324, 522, 753, 906, 1322
ScaI	AGTACT	1 cut(s)	1160
ScrFI	CCNGG	4 cut(s)	438, 688, 743, 920
SduI	GDGCHC	2 cut(s)	303, 532
SfaNI	GCATC	3 cut(s)	401, 727, 790
SfcI	CTRYAG	2 cut(s)	903, 1154
SfuI	TTCGAA	1 cut(s)	1575
SmiMI	CAYNNNNRTG	1 cut(s)	457
SseBI	AGGCCT	1 cut(s)	717
SsiI	CCGC	4 cut(s)	420, 498, 1013, 1145
SspMI	CTAG	8 cut(s)	411, 429, 539, 675, 1004, 1046, 1212, 1344
StuI	AGGCCT	1 cut(s)	717
StyD4I	CCNGG	4 cut(s)	436, 686, 741, 918
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	2 cut(s)	952, 1033
TaiI	ACGT	3 cut(s)	247, 361, 1390
TaqI	TCGA	4 cut(s)	303, 870, 1554, 1575
TatI	WGTACW	1 cut(s)	1158
TfiI	GAWTC	2 cut(s)	1025, 1539
Tru1I	TTAA	4 cut(s)	575, 1134, 1164, 1586
Tru9I	TTAA	4 cut(s)	575, 1134, 1164, 1586
TscAI	CASTG	2 cut(s)	810, 1476
TseFI	GTSAC	4 cut(s)	586, 805, 1409, 1508
TseI	GCWGC	5 cut(s)	323, 521, 752, 905, 1321
Tsp45I	GTSAC	4 cut(s)	586, 805, 1409, 1508
TspDTI	ATGAA	7 cut(s)	17, 81, 200, 248, 494, 522, 880
TspGWI	ACGGA	1 cut(s)	1511
TspRI	CASTG	2 cut(s)	810, 1476
XapI	RAATTY	3 cut(s)	40, 221, 340
XceI	RCATGY	2 cut(s)	646, 968
XmiI	GTMKAC	2 cut(s)	334, 1554
XmnI	GAANNNNTTC	2 cut(s)	453, 1543
XspI	CTAG	8 cut(s)	411, 429, 539, 675, 1004, 1046, 1212, 1344
ZrmI	AGTACT	1 cut(s)	1160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.