Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002546

Physical Location & Seq

Genomic Coordinates Forward (+)

45131891 .. 45136706

Gene Structure 4816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034573

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGATCAGTTCTCCACAGTAGCAGATAGAACTATTGACATTCAACAACAATTGGATAAATTCAGTGTCCATTGCCACCCATTTTTCAATACAGAAGATGCTATAGAAGAAGCCGCCAGAGCTTATGATATTGCAATGATAAGGGTGAGAGGGAGGAGAGCGTTCCCTAGTTTTGATATGAGTCTATATGATGTCCAAGCCATTCCGGATAGCAAAACCTTTCTAATAAATGGTGCTTCGAAGACGTTAAAGCGGAATTCAATTGATGATGTGCTTCAAAAGAAAAGAAAGACTCGCAATGTCTCCAGGTCAACCCCTAGTGCCCCACCATCACTTCACCCAATAGATCAAACCCAAATAACGGCAATTGATTCATGCCTTCAATATCAATTTCCGATCCCTTCGCTCCAAGTTACTGTCCTTCATGGTTACCAAAACCCTACCTTTGAAGCAAACCGAAGTTTCAATCCTCAGTATGACTATGGTGGAAGTGAACCGACAACCCAGTTTCAACCTATCCTACCCTTACTGAATCAAGAGTTTCCATCTCACCAATACTACAAAGGCAGTTCCCAGCACCACCTTGATCAAACCTCTAGCTCCCAGTTCCTTCAAGACACTCAGAACCCTAATCTTGTTGCTAGGTTAAACAACCTAGCAAGTGATAGCTGTATGGAAGAATTTTCCAGCAGTAAGGTTCATGACGCGAGTTTCGAGATGATGGGGATGAAGCAGGGTGGTGCTCATGGTGATGGCAGCAATCAAGTAGTTGGAAATCTTGGTAATCCTGAGTTTGGTCTGGGCAATTCTGACTTGGATCGATCCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010449 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0035266 GO:0040007 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098727 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

277

Amino Acids

30.86

Weight (kDa)

5.54

Isoelectric Point (pI)

54.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23031
malus_domestica	MD17G1047700.v1.1
prunus_persica	Prupe.7G069100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480851 RchiOBHm_Chr3g0480891
rosa_laevigata	RLG00000023444 RLG00000023445 RLG00000023447 RLG00000034573
rosa_multiflora	Rmu_sc0004058.1_g000024 Rmu_sc0004838.1_g000011 Rmu_sc0006028.1_g000028 Rmu_sc0012984.1_g000002 Rmu_sc0012984.1_g000013
rosa_roxburghii	Rroxscaffold_1G00032960 Rroxscaffold_6G00400920 Rroxscaffold_6G00400960
rosa_rugosa	Rorug03G0186900 Rorug03G0187000 Rorug03G0187000 Rorug03G0187200 Rorug03G0187300 Rorug05G0241400
rosa_samantha	Rh3AG238500 Rh3AG238600 Rh3BG272000 Rh3BG272500 Rh3BG272700 Rh3BG272800 Rh3CG267800 Rh3CG268300 Rh3DG264100 Rh3DG264400 Rh5AG321600 Rh5BG331900 Rh5CG357200 Rh5DG343700
rosa_wichuraiana	Rw0G006160 Rw3G021350 Rw3G021360 Rw5G030350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	707
AccIII	TCCGGA	1 cut(s)	205
AciI	CCGC	2 cut(s)	114, 253
AclWI	GGATC	4 cut(s)	12, 391, 816, 825
AcsI	RAATTY	3 cut(s)	59, 256, 680
AfiI	CCNNNNNNNGG	2 cut(s)	361, 794
AgsI	TTSAA	9 cut(s)	44, 88, 261, 278, 383, 449, 466, 512, 614
AjnI	CCWGG	1 cut(s)	305
AluBI	AGCT	3 cut(s)	122, 600, 669
AluI	AGCT	3 cut(s)	122, 600, 669
Alw21I	GWGCWC	1 cut(s)	745
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	4 cut(s)	12, 391, 816, 825
Aor13HI	TCCGGA	1 cut(s)	205
ApeKI	GCWGC	1 cut(s)	756
ApoI	RAATTY	3 cut(s)	59, 256, 680
ArsI	GACNNNNNNTTYG	2 cut(s)	695, 727
AsuHPI	GGTGA	4 cut(s)	157, 329, 542, 761
AsuII	TTCGAA	1 cut(s)	239
BaeGI	GKGCMC	1 cut(s)	325
BbsI	GAAGAC	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	745
BbvI	GCAGC	1 cut(s)	768
BccI	CCATC	4 cut(s)	337, 553, 715, 746
BceAI	ACGGC	1 cut(s)	378
BciT130I	CCWGG	1 cut(s)	307
BclI	TGATCA	1 cut(s)	586
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	6 cut(s)	168, 318, 597, 642, 656, 829
BfmI	CTRYAG	1 cut(s)	102
BisI	GCNGC	2 cut(s)	114, 757
BlsI	GCNGC	2 cut(s)	115, 758
Bme1390I	CCNGG	1 cut(s)	307
BmrFI	CCNGG	1 cut(s)	307
BmrI	ACTGGG	2 cut(s)	499, 598
BmsI	GCATC	1 cut(s)	88
BmuI	ACTGGG	2 cut(s)	499, 598
BpiI	GAAGAC	1 cut(s)	248
BpmI	CTGGAG	1 cut(s)	289
Bpu14I	TTCGAA	1 cut(s)	239
Bsa29I	ATCGAT	1 cut(s)	820
BsaWI	WCCGGW	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	2 cut(s)	361, 794
Bse1I	ACTGG	2 cut(s)	505, 604
Bse3DI	GCAATG	3 cut(s)	70, 141, 304
BseAI	TCCGGA	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	307
BseCI	ATCGAT	1 cut(s)	820
BseGI	GGATG	1 cut(s)	732
BseLI	CCNNNNNNNGG	2 cut(s)	361, 794
BseMI	GCAATG	3 cut(s)	70, 141, 304
BseMII	CTCAG	3 cut(s)	485, 635, 780
BseNI	ACTGG	2 cut(s)	505, 604
BseRI	GAGGAG	1 cut(s)	169
BseSI	GKGCMC	1 cut(s)	325
BseXI	GCAGC	1 cut(s)	768
BseYI	CCCAGC	1 cut(s)	573
Bsh1236I	CGCG	1 cut(s)	707
BshVI	ATCGAT	1 cut(s)	820
BsiHKAI	GWGCWC	1 cut(s)	745
BsiSI	CCGG	1 cut(s)	206
BslI	CCNNNNNNNGG	2 cut(s)	361, 794
BsmAI	GTCTC	1 cut(s)	307
Bsp119I	TTCGAA	1 cut(s)	239
Bsp1286I	GDGCHC	2 cut(s)	325, 745
Bsp13I	TCCGGA	1 cut(s)	205
Bsp143I	GATC	6 cut(s)	4, 346, 396, 586, 817, 821
BspACI	CCGC	2 cut(s)	114, 253
BspCNI	CTCAG	3 cut(s)	484, 634, 781
BspDI	ATCGAT	1 cut(s)	820
BspEI	TCCGGA	1 cut(s)	205
BspFNI	CGCG	1 cut(s)	707
BspHI	TCATGA	1 cut(s)	700
BspPI	GGATC	4 cut(s)	12, 391, 816, 825
BspT104I	TTCGAA	1 cut(s)	239
BsrDI	GCAATG	3 cut(s)	70, 141, 304
BsrI	ACTGG	2 cut(s)	505, 604
BssMI	GATC	6 cut(s)	4, 346, 396, 586, 817, 821
Bst2UI	CCWGG	1 cut(s)	307
Bst4CI	ACNGT	2 cut(s)	19, 418
BstBI	TTCGAA	1 cut(s)	239
BstDEI	CTNAG	3 cut(s)	471, 621, 789
BstEII	GGTNACC	1 cut(s)	428
BstF5I	GGATG	1 cut(s)	732
BstFNI	CGCG	1 cut(s)	707
BstKTI	GATC	6 cut(s)	7, 349, 399, 589, 820, 824
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	6 cut(s)	4, 346, 396, 586, 817, 821
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	1 cut(s)	307
BstPI	GGTNACC	1 cut(s)	428
BstSCI	CCNGG	1 cut(s)	305
BstSFI	CTRYAG	1 cut(s)	102
BstSLI	GKGCMC	1 cut(s)	325
BstUI	CGCG	1 cut(s)	707
BstV1I	GCAGC	1 cut(s)	768
BstV2I	GAAGAC	1 cut(s)	248
Bsu15I	ATCGAT	1 cut(s)	820
BsuTUI	ATCGAT	1 cut(s)	820
BtsCI	GGATG	1 cut(s)	732
BtsIMutI	CAGTG	1 cut(s)	70
CciI	TCATGA	1 cut(s)	700
ClaI	ATCGAT	1 cut(s)	820
CseI	GACGC	1 cut(s)	713
CviAII	CATG	4 cut(s)	375, 425, 701, 746
CviJI	RGCY	5 cut(s)	113, 122, 200, 600, 669
CviKI_1	RGCY	5 cut(s)	113, 122, 200, 600, 669
DdeI	CTNAG	3 cut(s)	471, 621, 789
DpnI	GATC	6 cut(s)	6, 348, 398, 588, 819, 823
DpnII	GATC	6 cut(s)	4, 346, 396, 586, 817, 821
Eco91I	GGTNACC	1 cut(s)	428
EcoO65I	GGTNACC	1 cut(s)	428
EcoRI	GAATTC	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	305
FaeI	CATG	4 cut(s)	378, 428, 704, 749
FatI	CATG	4 cut(s)	374, 424, 700, 745
FbaI	TGATCA	1 cut(s)	586
Fnu4HI	GCNGC	2 cut(s)	114, 757
FokI	GGATG	1 cut(s)	739
Fsp4HI	GCNGC	2 cut(s)	114, 757
FspBI	CTAG	6 cut(s)	168, 318, 597, 642, 656, 829
GluI	GCNGC	2 cut(s)	114, 757
GsaI	CCCAGC	1 cut(s)	577
GsuI	CTGGAG	1 cut(s)	289
HapII	CCGG	1 cut(s)	206
HgaI	GACGC	1 cut(s)	713
Hin1II	CATG	4 cut(s)	378, 428, 704, 749
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HinfI	GANTC	4 cut(s)	181, 292, 371, 532
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	4 cut(s)	157, 329, 542, 761
Hpy166II	GTNNAC	2 cut(s)	312, 494
Hpy188I	TCNGA	3 cut(s)	396, 624, 811
Hpy188III	TCNNGA	6 cut(s)	206, 536, 614, 701, 715, 788
Hpy8I	GTNNAC	2 cut(s)	312, 494
HpyAV	CCTTC	4 cut(s)	389, 411, 431, 620
HpyCH4III	ACNGT	2 cut(s)	19, 418
HpyCH4IV	ACGT	1 cut(s)	245
HpyCH4V	TGCA	1 cut(s)	134
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	3 cut(s)	471, 621, 789
HpySE526I	ACGT	1 cut(s)	245
Hsp92II	CATG	4 cut(s)	378, 428, 704, 749
Kpn2I	TCCGGA	1 cut(s)	205
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	6 cut(s)	4, 346, 396, 586, 817, 821
LmnI	GCTCC	2 cut(s)	411, 605
Lsp1109I	GCAGC	1 cut(s)	768
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	6 cut(s)	168, 318, 597, 642, 656, 829
MaeII	ACGT	1 cut(s)	245
MaeIII	GTNAC	2 cut(s)	412, 428
MalI	GATC	6 cut(s)	6, 348, 398, 588, 819, 823
MboI	GATC	6 cut(s)	4, 346, 396, 586, 817, 821
MboII	GAAGA	4 cut(s)	107, 119, 253, 689
MfeI	CAATTG	3 cut(s)	50, 261, 366
MhlI	GDGCHC	2 cut(s)	325, 745
MluCI	AATT	8 cut(s)	50, 59, 256, 261, 366, 389, 680, 805
MlyI	GAGTC	2 cut(s)	190, 286
MmeI	TCCRAC	1 cut(s)	751
MnlI	CCTC	4 cut(s)	143, 147, 480, 604
MroI	TCCGGA	1 cut(s)	205
MseI	TTAA	2 cut(s)	248, 647
MslI	CAYNNNNRTG	1 cut(s)	750
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	307
MunI	CAATTG	3 cut(s)	50, 261, 366
MvaI	CCWGG	1 cut(s)	307
MvnI	CGCG	1 cut(s)	707
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	6 cut(s)	4, 346, 396, 586, 817, 821
NlaIII	CATG	4 cut(s)	378, 428, 704, 749
NspV	TTCGAA	1 cut(s)	239
PagI	TCATGA	1 cut(s)	700
PcsI	WCGNNNNNNNCGW	1 cut(s)	711
PfeI	GAWTC	2 cut(s)	371, 532
PkrI	GCNGC	2 cut(s)	115, 758
PleI	GAGTC	2 cut(s)	189, 286
PpsI	GAGTC	2 cut(s)	189, 286
Psp6I	CCWGG	1 cut(s)	305
PspEI	GGTNACC	1 cut(s)	428
PspFI	CCCAGC	1 cut(s)	573
PspGI	CCWGG	1 cut(s)	305
RseI	CAYNNNNRTG	1 cut(s)	750
SaqAI	TTAA	2 cut(s)	248, 647
SatI	GCNGC	2 cut(s)	114, 757
Sau3AI	GATC	6 cut(s)	4, 346, 396, 586, 817, 821
SchI	GAGTC	2 cut(s)	190, 286
ScrFI	CCNGG	1 cut(s)	307
SduI	GDGCHC	2 cut(s)	325, 745
SfaNI	GCATC	1 cut(s)	88
SfcI	CTRYAG	1 cut(s)	102
SfuI	TTCGAA	1 cut(s)	239
SmiMI	CAYNNNNRTG	1 cut(s)	750
Sse9I	AATT	8 cut(s)	50, 59, 256, 261, 366, 389, 680, 805
SsiI	CCGC	2 cut(s)	114, 253
SspMI	CTAG	6 cut(s)	168, 318, 597, 642, 656, 829
StyD4I	CCNGG	1 cut(s)	305
TaaI	ACNGT	2 cut(s)	19, 418
TaiI	ACGT	1 cut(s)	248
TaqI	TCGA	3 cut(s)	239, 714, 820
TasI	AATT	8 cut(s)	50, 59, 256, 261, 366, 389, 680, 805
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	2 cut(s)	371, 532
Tru1I	TTAA	2 cut(s)	248, 647
Tru9I	TTAA	2 cut(s)	248, 647
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	1 cut(s)	756
TspDTI	ATGAA	4 cut(s)	363, 413, 689, 743
TspRI	CASTG	1 cut(s)	70
XapI	RAATTY	3 cut(s)	59, 256, 680
XspI	CTAG	6 cut(s)	168, 318, 597, 642, 656, 829

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.