Rmu_sc0012984.1_g000013

AP2-like ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012984.1
Physical Location & Seq
Forward (+)
53210 .. 56462
3253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012984.1_g000013.1.cds

Sequence Viewer

Length: 1659 bp
atggccagtgataatttcatgaaccaaggggagaatgctagtggaagtggcacaaaatctgcggaaataaagcgcaaacgttgccctactaaaaagagtaaacgaacattatttggtgagaaaagtgataatgtgctccaccaagagaagaatcttactggaagtggactcaattctgtgaaagtgcaacgtaaacgtccgcctactaaaaagggcaaaaaagcatctggtcatcagagaagttctaggtttcgcggagttacgaggtacccagagcattttgaagcatttctatgggataattctgatccacaagtgaaaggcaagacaggcggatttcgagaagaagagcaagctgccagagcacacgatctagctgctttgaagtattggggcgactctaccccattaaacttccctgtgagtggttacatgaaggaattgaaggaaatgcaagcatatacaaagaaagactatttgctccatattcgaaggtatggagataatatgagatggcaagccagattaggcaaaggcaaagacacgaaaggcctttatgtgggaacatttgatactcaagaggaagcagcaagggcttatgatattgcagtaataaaatgtagaggagggtgggaagcagtgaccaattttgatctaagccactacgatgtcgaaggtattcttgagagcccaaatattccaattgaaaatggtgcttcaaagttcataaggtggactacagctgatcatatcatccagagcagaagaaccactaacaatgttgccgtttcacaactacaagttgacagctcgggtaataaccctaatataaccccaacagccccaccattatttgaaccaacagtgcaatccctagaaacccattacaattcaaacccagaacaacaatatacatgcccctccctcaatcccaaccaaaataatgaccagatccaaatattccaattcccgcagtactttaaaaaccctaactttgaatttgatcatcttccttgctaccagaaacctaatttcccaataaaccctagtttcaataattggggtaaccatggtgaaaatgagcagatagaaaatgagcagatagagccatcactccagtttcaacttattctgaccccagagaaccacgagcttcagtttcatcagtataacagtgataattcccagccccacctgcctcaaaaccctagctcctccagtcttcaagactttcagaacccagagaaccacgagcagatagagccatcactccagtttcagcctattctgaccccagagaaccacgagtttcagtttcatcagcataacagtgataattaccagccccatctgcctcaaaacccttgctcctccagtcttcaagactttcagaaccctaattgccatgaaaaccctaatatttttcgtgagttgactaaccttcaaagtggtagcgatatcagggaatttcccagtggtcaggaaccagtggcgagcttaacaatgatggggacgaacgagagtcactgtgatttcaccaatacagtagaggaaaatagaaattttgctgaagactttagggtggacaattcagacttggacatttcatctagcagctggttcgaaatgttaatgaccttaaacagttctgacttctga

Protein Analysis

552

Amino Acids

63.16

Weight (kDa)

5.58

Isoelectric Point (pI)

50.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1203
Acc36I ACCTGC 1 cut(s) 1203
Acc65I GGTACC 1 cut(s) 267
AccB1I GGYRCC 1 cut(s) 267
AccII CGCG 1 cut(s) 255
AciI CCGC 5 cut(s) 62, 200, 255, 333, 971
AclI AACGTT 1 cut(s) 79
AclWI GGATC 2 cut(s) 302, 946
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 998, 1466, 1561
AcuI CTGAAG 2 cut(s) 1139, 1590
AfaI GTAC 2 cut(s) 269, 977
AfiI CCNNNNNNNGG 2 cut(s) 425, 559
AluBI AGCT 8 cut(s) 356, 377, 743, 810, 1153, 1212, 1497, 1617
AluI AGCT 8 cut(s) 356, 377, 743, 810, 1153, 1212, 1497, 1617
Alw21I GWGCWC 2 cut(s) 138, 367
AlwI GGATC 2 cut(s) 302, 946
Ama87I CYCGRG 1 cut(s) 811
AoxI GGCC 2 cut(s) 3, 550
ApeKI GCWGC 4 cut(s) 356, 377, 587, 1614
ApoI RAATTY 3 cut(s) 998, 1466, 1561
Asp700I GAANNNNTTC 2 cut(s) 288, 678
Asp718I GGTACC 1 cut(s) 267
AspLEI GCGC 1 cut(s) 75
AsuHPI GGTGA 3 cut(s) 128, 1085, 1528
AsuII TTCGAA 2 cut(s) 490, 1623
AvaI CYCGRG 1 cut(s) 811
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 267
BanII GRGCYC 1 cut(s) 692
BauI CACGAG 3 cut(s) 1148, 1250, 1304
BbsI GAAGAC 3 cut(s) 1214, 1370, 1578
Bbv12I GWGCWC 2 cut(s) 138, 367
BbvI GCAGC 4 cut(s) 343, 364, 599, 1626
BccI CCATC 5 cut(s) 507, 1117, 1273, 1356, 1501
BceAI ACGGC 1 cut(s) 770
BcgI CGANNNNNNTGC 4 cut(s) 359, 393, 1603, 1637
BclI TGATCA 2 cut(s) 745, 1003
BfaI CTAG 7 cut(s) 39, 246, 374, 875, 1047, 1209, 1611
BfmI CTRYAG 1 cut(s) 738
BfuAI ACCTGC 1 cut(s) 1203
BisI GCNGC 4 cut(s) 357, 378, 588, 1615
BlsI GCNGC 4 cut(s) 358, 379, 589, 1616
BmcAI AGTACT 1 cut(s) 977
BmeT110I CYCGRG 1 cut(s) 811
BmiI GGNNCC 2 cut(s) 269, 1485
BmrI ACTGGG 1 cut(s) 1467
BmsI GCATC 1 cut(s) 233
BmuI ACTGGG 1 cut(s) 1467
BpiI GAAGAC 3 cut(s) 1214, 1370, 1578
BpmI CTGGAG 4 cut(s) 1100, 1201, 1256, 1357
Bpu14I TTCGAA 2 cut(s) 490, 1623
BpuEI CTTGAG 2 cut(s) 561, 704
BsaJI CCNNGG 2 cut(s) 25, 1069
BsaXI ACNNNNNCTCC 4 cut(s) 1196, 1226, 1352, 1382
Bsc4I CCNNNNNNNGG 2 cut(s) 425, 559
Bse1I ACTGG 8 cut(s) 6, 163, 1117, 1218, 1273, 1374, 1473, 1487
BseDI CCNNGG 2 cut(s) 25, 1069
BseGI GGATG 1 cut(s) 753
BseLI CCNNNNNNNGG 2 cut(s) 425, 559
BseNI ACTGG 8 cut(s) 6, 163, 1117, 1218, 1273, 1374, 1473, 1487
BseRI GAGGAG 3 cut(s) 639, 1204, 1360
BseXI GCAGC 4 cut(s) 343, 364, 599, 1626
BseYI CCCAGC 1 cut(s) 1185
Bsh1236I CGCG 1 cut(s) 255
BshFI GGCC 2 cut(s) 5, 552
BshNI GGYRCC 1 cut(s) 267
BsiHKAI GWGCWC 2 cut(s) 138, 367
BsiHKCI CYCGRG 1 cut(s) 811
BslFI GGGAC 1 cut(s) 1525
BslI CCNNNNNNNGG 2 cut(s) 425, 559
BsmFI GGGAC 1 cut(s) 1525
BsmI GAATGC 1 cut(s) 40
BsnI GGCC 2 cut(s) 5, 552
BsoBI CYCGRG 1 cut(s) 811
Bsp119I TTCGAA 2 cut(s) 490, 1623
Bsp1286I GDGCHC 3 cut(s) 138, 367, 692
Bsp143I GATC 6 cut(s) 307, 370, 652, 745, 951, 1003
Bsp19I CCATGG 1 cut(s) 1069
BspACI CCGC 5 cut(s) 62, 200, 255, 333, 971
BspANI GGCC 2 cut(s) 5, 552
BspFNI CGCG 1 cut(s) 255
BspHI TCATGA 1 cut(s) 18
BspLI GGNNCC 2 cut(s) 269, 1485
BspMI ACCTGC 1 cut(s) 1203
BspPI GGATC 2 cut(s) 302, 946
BspQI GCTCTTC 1 cut(s) 342
BspT104I TTCGAA 2 cut(s) 490, 1623
BspT107I GGYRCC 1 cut(s) 267
BsrI ACTGG 8 cut(s) 6, 163, 1117, 1218, 1273, 1374, 1473, 1487
BssECI CCNNGG 2 cut(s) 25, 1069
BssMI GATC 6 cut(s) 307, 370, 652, 745, 951, 1003
BssSI CACGAG 3 cut(s) 1148, 1250, 1304
BssT1I CCWWGG 2 cut(s) 25, 1069
Bst2BI CACGAG 3 cut(s) 1148, 1250, 1304
Bst4CI ACNGT 6 cut(s) 865, 1175, 1331, 1529, 1546, 1646
Bst6I CTCTTC 1 cut(s) 342
BstAPI GCANNNNNTGC 1 cut(s) 81
BstBI TTCGAA 2 cut(s) 490, 1623
BstC8I GCNNGC 4 cut(s) 354, 456, 519, 1495
BstDEI CTNAG 1 cut(s) 656
BstDSI CCRYGG 1 cut(s) 1069
BstEII GGTNACC 1 cut(s) 1064
BstF5I GGATG 1 cut(s) 753
BstFNI CGCG 1 cut(s) 255
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 6 cut(s) 310, 373, 655, 748, 954, 1006
BstMBI GATC 6 cut(s) 307, 370, 652, 745, 951, 1003
BstMWI GCNNNNNNNGC 8 cut(s) 81, 330, 362, 593, 1105, 1195, 1261, 1351
BstNSI RCATGY 1 cut(s) 918
BstPI GGTNACC 1 cut(s) 1064
BstSFI CTRYAG 1 cut(s) 738
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 4 cut(s) 343, 364, 599, 1626
BstV2I GAAGAC 3 cut(s) 1214, 1370, 1578
BstX2I RGATCY 1 cut(s) 951
BstYI RGATCY 1 cut(s) 951
BsuRI GGCC 2 cut(s) 5, 552
BtgI CCRYGG 1 cut(s) 1069
BtsCI GGATG 1 cut(s) 753
BtsI GCAGTG 1 cut(s) 645
BtsIMutI CAGTG 8 cut(s) 13, 645, 870, 1180, 1336, 1480, 1494, 1525
BveI ACCTGC 1 cut(s) 1203
Cac8I GCNNGC 4 cut(s) 354, 456, 519, 1495
CciI TCATGA 1 cut(s) 18
CfoI GCGC 1 cut(s) 75
Csp6I GTAC 2 cut(s) 268, 976
CviAII CATG 5 cut(s) 19, 433, 915, 1070, 1406
CviQI GTAC 2 cut(s) 268, 976
DdeI CTNAG 1 cut(s) 656
DpnI GATC 6 cut(s) 309, 372, 654, 747, 953, 1005
DpnII GATC 6 cut(s) 307, 370, 652, 745, 951, 1003
DraI TTTAAA 1 cut(s) 982
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 342
EarI CTCTTC 1 cut(s) 342
EciI GGCGGA 2 cut(s) 189, 348
Eco130I CCWWGG 2 cut(s) 25, 1069
Eco147I AGGCCT 1 cut(s) 552
Eco24I GRGCYC 1 cut(s) 692
Eco32I GATATC 1 cut(s) 1459
Eco57I CTGAAG 2 cut(s) 1139, 1590
Eco88I CYCGRG 1 cut(s) 811
Eco91I GGTNACC 1 cut(s) 1064
EcoO65I GGTNACC 1 cut(s) 1064
EcoRV GATATC 1 cut(s) 1459
EcoT14I CCWWGG 2 cut(s) 25, 1069
EcoT38I GRGCYC 1 cut(s) 692
ErhI CCWWGG 2 cut(s) 25, 1069
FaeI CATG 5 cut(s) 22, 436, 918, 1073, 1409
FalI AAGNNNNNCTT 2 cut(s) 666, 698
FaqI GGGAC 1 cut(s) 1525
FatI CATG 5 cut(s) 18, 432, 914, 1069, 1405
FauI CCCGC 1 cut(s) 978
FbaI TGATCA 2 cut(s) 745, 1003
Fnu4HI GCNGC 4 cut(s) 357, 378, 588, 1615
FokI GGATG 1 cut(s) 740
FriOI GRGCYC 1 cut(s) 692
Fsp4HI GCNGC 4 cut(s) 357, 378, 588, 1615
FspBI CTAG 7 cut(s) 39, 246, 374, 875, 1047, 1209, 1611
GlaI GCGC 1 cut(s) 74
GluI GCNGC 4 cut(s) 357, 378, 588, 1615
GsaI CCCAGC 1 cut(s) 1189
GsuI CTGGAG 4 cut(s) 1100, 1201, 1256, 1357
HaeIII GGCC 2 cut(s) 5, 552
HhaI GCGC 1 cut(s) 75
Hin1II CATG 5 cut(s) 22, 436, 918, 1073, 1409
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HincII GTYRAC 2 cut(s) 805, 1434
HindII GTYRAC 2 cut(s) 805, 1434
HinfI GANTC 4 cut(s) 151, 168, 398, 1522
HphI GGTGA 3 cut(s) 128, 1085, 1528
Hpy166II GTNNAC 7 cut(s) 101, 167, 194, 735, 805, 1434, 1585
Hpy188I TCNGA 9 cut(s) 237, 307, 1134, 1236, 1290, 1392, 1594, 1651, 1658
Hpy188III TCNNGA 9 cut(s) 19, 341, 578, 683, 757, 1226, 1382, 1427, 1481
Hpy8I GTNNAC 7 cut(s) 101, 167, 194, 735, 805, 1434, 1585
HpyAV CCTTC 5 cut(s) 430, 439, 486, 668, 1451
HpyCH4III ACNGT 6 cut(s) 865, 1175, 1331, 1529, 1546, 1646
HpyCH4IV ACGT 3 cut(s) 79, 190, 196
HpyCH4V TGCA 4 cut(s) 187, 454, 608, 868
HpyF10VI GCNNNNNNNGC 8 cut(s) 81, 330, 362, 593, 1105, 1195, 1261, 1351
HpyF3I CTNAG 1 cut(s) 656
HpySE526I ACGT 3 cut(s) 79, 190, 196
Hsp92II CATG 5 cut(s) 22, 436, 918, 1073, 1409
HspAI GCGC 1 cut(s) 73
KpnI GGTACC 1 cut(s) 271
Ksp22I TGATCA 2 cut(s) 745, 1003
Kzo9I GATC 6 cut(s) 307, 370, 652, 745, 951, 1003
LguI GCTCTTC 1 cut(s) 342
LmnI GCTCC 4 cut(s) 141, 486, 1217, 1373
Lsp1109I GCAGC 4 cut(s) 343, 364, 599, 1626
LweI GCATC 1 cut(s) 233
MaeI CTAG 7 cut(s) 39, 246, 374, 875, 1047, 1209, 1611
MaeII ACGT 3 cut(s) 79, 190, 196
MaeIII GTNAC 5 cut(s) 259, 428, 640, 1064, 1523
MalI GATC 6 cut(s) 309, 372, 654, 747, 953, 1005
MboI GATC 6 cut(s) 307, 370, 652, 745, 951, 1003
MboII GAAGA 8 cut(s) 160, 356, 359, 777, 1001, 1214, 1370, 1583
MfeI CAATTG 1 cut(s) 702
MflI RGATCY 1 cut(s) 951
MhlI GDGCHC 3 cut(s) 138, 367, 692
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 162, 392, 1531
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 2 cut(s) 288, 678
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 410, 981, 1499, 1631, 1640
MslI CAYNNNNRTG 3 cut(s) 292, 666, 1329
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 743, 1617
MunI CAATTG 1 cut(s) 702
Mva1269I GAATGC 1 cut(s) 40
MvnI CGCG 1 cut(s) 255
MwoI GCNNNNNNNGC 8 cut(s) 81, 330, 362, 593, 1105, 1195, 1261, 1351
NcoI CCATGG 1 cut(s) 1069
NdeII GATC 6 cut(s) 307, 370, 652, 745, 951, 1003
NlaIII CATG 5 cut(s) 22, 436, 918, 1073, 1409
NlaIV GGNNCC 2 cut(s) 269, 1485
NmuCI GTSAC 2 cut(s) 640, 1523
NspI RCATGY 1 cut(s) 918
NspV TTCGAA 2 cut(s) 490, 1623
PagI TCATGA 1 cut(s) 18
PaqCI CACCTGC 1 cut(s) 1203
PceI AGGCCT 1 cut(s) 552
PciSI GCTCTTC 1 cut(s) 342
PctI GAATGC 1 cut(s) 40
PdmI GAANNNNTTC 2 cut(s) 288, 678
PfeI GAWTC 1 cut(s) 151
PkrI GCNGC 4 cut(s) 358, 379, 589, 1616
PleI GAGTC 3 cut(s) 162, 392, 1530
PpsI GAGTC 3 cut(s) 162, 392, 1530
Psp1406I AACGTT 1 cut(s) 79
PspEI GGTNACC 1 cut(s) 1064
PspFI CCCAGC 1 cut(s) 1185
PspN4I GGNNCC 2 cut(s) 269, 1485
PsrI GAACNNNNNNTAC 2 cut(s) 556, 588
PsuI RGATCY 1 cut(s) 951
PvuII CAGCTG 2 cut(s) 743, 1617
RsaI GTAC 2 cut(s) 269, 977
RsaNI GTAC 2 cut(s) 268, 976
RseI CAYNNNNRTG 3 cut(s) 292, 666, 1329
SapI GCTCTTC 1 cut(s) 342
SaqAI TTAA 5 cut(s) 410, 981, 1499, 1631, 1640
SatI GCNGC 4 cut(s) 357, 378, 588, 1615
Sau3AI GATC 6 cut(s) 307, 370, 652, 745, 951, 1003
ScaI AGTACT 1 cut(s) 977
SchI GAGTC 3 cut(s) 162, 392, 1531
SduI GDGCHC 3 cut(s) 138, 367, 692
SfaNI GCATC 1 cut(s) 233
SfcI CTRYAG 1 cut(s) 738
SfuI TTCGAA 2 cut(s) 490, 1623
SmiMI CAYNNNNRTG 3 cut(s) 292, 666, 1329
SmlI CTYRAG 2 cut(s) 576, 683
SmoI CTYRAG 2 cut(s) 576, 683
SseBI AGGCCT 1 cut(s) 552
SsiI CCGC 5 cut(s) 62, 200, 255, 333, 971
SspI AATATT 3 cut(s) 697, 960, 1420
SspMI CTAG 7 cut(s) 39, 246, 374, 875, 1047, 1209, 1611
StuI AGGCCT 1 cut(s) 552
StyI CCWWGG 2 cut(s) 25, 1069
TaaI ACNGT 6 cut(s) 865, 1175, 1331, 1529, 1546, 1646
TaiI ACGT 3 cut(s) 82, 193, 199
TaqI TCGA 4 cut(s) 340, 490, 672, 1623
TatI WGTACW 1 cut(s) 975
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 5 cut(s) 410, 981, 1499, 1631, 1640
Tru9I TTAA 5 cut(s) 410, 981, 1499, 1631, 1640
TscAI CASTG 8 cut(s) 13, 645, 870, 1180, 1336, 1480, 1494, 1532
TseFI GTSAC 2 cut(s) 640, 1523
TseI GCWGC 4 cut(s) 356, 377, 587, 1614
Tsp45I GTSAC 2 cut(s) 640, 1523
TspDTI ATGAA 8 cut(s) 7, 35, 449, 715, 1151, 1307, 1422, 1596
TspRI CASTG 8 cut(s) 13, 645, 870, 1180, 1336, 1480, 1494, 1532
XapI RAATTY 3 cut(s) 998, 1466, 1561
XceI RCATGY 1 cut(s) 918
XmnI GAANNNNTTC 2 cut(s) 288, 678
XspI CTAG 7 cut(s) 39, 246, 374, 875, 1047, 1209, 1611
ZrmI AGTACT 1 cut(s) 977
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.