Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006028.1

Orthogroup ID

OG0002546

Physical Location & Seq

Genomic Coordinates Forward (+)

130719 .. 134134

Gene Structure 3416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006028.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

atgtgcaaaagaagttgtgatcattggctccacgaagtgaaaaatgagatccttttcgggatgtcgatgaacagagatagcttccgtttccattcttccgagtccatggacagcaatttatacttgcagcctgataacccatttcaacttccaagttccataagagatgcgccacatgactgtaattttactgttgctaactatccagttccaccaccattgcctttgggaggttatgagggttttataactggggcaaacaacagcacttatggagggaaacaaactaggaacgcgcaaaacaaaaaatggcaagttaggttaggaaaaggaaaagacattgatagcatttatgttggaacatttgataccgaagagcaagccgccgaagcatatgacgttgcagctataagggtgaaagggccgaaggcaatcaccaattttgataaaagtaactacgatgtcaaacagattcttgaaagcccaaaatttctaattaataaaggtgcatcgaagacgttgaagcgaagttcagttgatgatgtgcttcaaaagagaagaaagactcgcagtgactccagctcaacccctagtgccccaccatcacttcacccaatagatcaaactcaaccaacggtaatcgattcaagccttcaatatcaatttccgattccttacctccaagtcccagtccctcacggttaccaaaaccctatctttgaagcaaaccgaagtttcagtcctcagtatgactatggtggaagtgagccaatagcccagcttcaacctatcatacccttattgaatcaagagtttccatctcatcagtattgtaacagcaattcccagcaccaccttgatcaaacccctagctcccagttccttcaagacactcagaatcctaatcttgttgctgggttgaacaaccttgcaagtgatagctgtatggaagaattttccagcagtcaggttcttgaggcgagttccgagatgatgggaacgaacgagggtggcgctcatggtgatggtagcagtcatgtagttggaaatcttggtgatcctgtgtttgggctgggcaattctgacttggatcctgcgagctggctagaaacgttcttgaggatgagcccacaatgtcctaattctatggtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010449 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0035266 GO:0040007 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098727 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

384

Amino Acids

42.48

Weight (kDa)

5.35

Isoelectric Point (pI)

61.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23031
malus_domestica	MD17G1047700.v1.1
prunus_persica	Prupe.7G069100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480851 RchiOBHm_Chr3g0480891
rosa_laevigata	RLG00000023444 RLG00000023445 RLG00000023447 RLG00000034573
rosa_multiflora	Rmu_sc0004058.1_g000024 Rmu_sc0004838.1_g000011 Rmu_sc0006028.1_g000028 Rmu_sc0012984.1_g000002 Rmu_sc0012984.1_g000013
rosa_roxburghii	Rroxscaffold_1G00032960 Rroxscaffold_6G00400920 Rroxscaffold_6G00400960
rosa_rugosa	Rorug03G0186900 Rorug03G0187000 Rorug03G0187000 Rorug03G0187200 Rorug03G0187300 Rorug05G0241400
rosa_samantha	Rh3AG238500 Rh3AG238600 Rh3BG272000 Rh3BG272500 Rh3BG272700 Rh3BG272800 Rh3CG267800 Rh3CG268300 Rh3DG264100 Rh3DG264400 Rh5AG321600 Rh5BG331900 Rh5CG357200 Rh5DG343700
rosa_wichuraiana	Rw0G006160 Rw3G021350 Rw3G021360 Rw5G030350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	248
AccII	CGCG	1 cut(s)	296
AciI	CCGC	1 cut(s)	384
AclI	AACGTT	1 cut(s)	1112
AclWI	GGATC	4 cut(s)	43, 1052, 1085, 1098
AcsI	RAATTY	2 cut(s)	488, 953
AdeI	CACNNNGTG	1 cut(s)	37
AfiI	CCNNNNNNNGG	2 cut(s)	230, 1067
AluBI	AGCT	7 cut(s)	81, 407, 582, 781, 873, 942, 1101
AluI	AGCT	7 cut(s)	81, 407, 582, 781, 873, 942, 1101
AlwI	GGATC	4 cut(s)	43, 1052, 1085, 1098
AoxI	GGCC	1 cut(s)	422
ApeKI	GCWGC	2 cut(s)	127, 404
ApoI	RAATTY	2 cut(s)	488, 953
ArsI	GACNNNNNNTTYG	2 cut(s)	724, 756
AseI	ATTAAT	1 cut(s)	498
AspLEI	GCGC	3 cut(s)	172, 298, 1016
AspS9I	GGNCC	1 cut(s)	422
AsuHPI	GGTGA	5 cut(s)	427, 427, 602, 1034, 1067
BaeGI	GKGCMC	1 cut(s)	598
BamHI	GGATCC	1 cut(s)	1090
BanII	GRGCYC	1 cut(s)	1130
BbsI	GAAGAC	1 cut(s)	521
BbvI	GCAGC	2 cut(s)	139, 416
BccI	CCATC	4 cut(s)	610, 826, 988, 1019
BclI	TGATCA	2 cut(s)	19, 859
BfaI	CTAG	4 cut(s)	288, 591, 870, 1106
BfoI	RGCGCY	1 cut(s)	1017
BisI	GCNGC	3 cut(s)	128, 384, 405
BlsI	GCNGC	3 cut(s)	129, 385, 406
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	2 cut(s)	29, 1092
BmrI	ACTGGG	3 cut(s)	261, 683, 871
BmsI	GCATC	2 cut(s)	157, 518
BmuI	ACTGGG	3 cut(s)	261, 683, 871
BpiI	GAAGAC	1 cut(s)	521
BpmI	CTGGAG	1 cut(s)	562
BpuEI	CTTGAG	2 cut(s)	995, 1138
Bsa29I	ATCGAT	1 cut(s)	642
BsaJI	CCNNGG	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 1067
Bse1I	ACTGG	4 cut(s)	206, 256, 689, 877
Bse3DI	GCAATG	1 cut(s)	218
BseCI	ATCGAT	1 cut(s)	642
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	2 cut(s)	66, 1128
BseLI	CCNNNNNNNGG	2 cut(s)	230, 1067
BseMI	GCAATG	1 cut(s)	218
BseMII	CTCAG	2 cut(s)	758, 908
BseNI	ACTGG	4 cut(s)	206, 256, 689, 877
BseSI	GKGCMC	1 cut(s)	598
BseXI	GCAGC	2 cut(s)	139, 416
BseYI	CCCAGC	4 cut(s)	777, 846, 914, 1072
Bsh1236I	CGCG	1 cut(s)	296
BshFI	GGCC	1 cut(s)	424
BshVI	ATCGAT	1 cut(s)	642
BslFI	GGGAC	2 cut(s)	671, 677
BslI	CCNNNNNNNGG	2 cut(s)	230, 1067
BsmFI	GGGAC	2 cut(s)	671, 677
BsnI	GGCC	1 cut(s)	424
Bsp1286I	GDGCHC	2 cut(s)	598, 1130
Bsp143I	GATC	6 cut(s)	19, 48, 619, 859, 1057, 1090
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	1 cut(s)	384
BspANI	GGCC	1 cut(s)	424
BspCNI	CTCAG	2 cut(s)	757, 907
BspDI	ATCGAT	1 cut(s)	642
BspFNI	CGCG	1 cut(s)	296
BspLI	GGNNCC	2 cut(s)	29, 1092
BspPI	GGATC	4 cut(s)	43, 1052, 1085, 1098
BspQI	GCTCTTC	1 cut(s)	369
BsrDI	GCAATG	1 cut(s)	218
BsrI	ACTGG	4 cut(s)	206, 256, 689, 877
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	6 cut(s)	19, 48, 619, 859, 1057, 1090
BssT1I	CCWWGG	1 cut(s)	105
Bst4CI	ACNGT	4 cut(s)	182, 193, 637, 701
Bst6I	CTCTTC	1 cut(s)	369
BstC8I	GCNNGC	3 cut(s)	381, 1099, 1103
BstDEI	CTNAG	2 cut(s)	744, 894
BstDSI	CCRYGG	1 cut(s)	105
BstEII	GGTNACC	1 cut(s)	701
BstENI	CCTNNNNNAGG	1 cut(s)	228
BstF5I	GGATG	2 cut(s)	66, 1128
BstFNI	CGCG	1 cut(s)	296
BstH2I	RGCGCY	1 cut(s)	1017
BstHHI	GCGC	3 cut(s)	172, 298, 1016
BstKTI	GATC	6 cut(s)	22, 51, 622, 862, 1060, 1093
BstMBI	GATC	6 cut(s)	19, 48, 619, 859, 1057, 1090
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstPI	GGTNACC	1 cut(s)	701
BstSLI	GKGCMC	1 cut(s)	598
BstUI	CGCG	1 cut(s)	296
BstV1I	GCAGC	2 cut(s)	139, 416
BstV2I	GAAGAC	1 cut(s)	521
BstX2I	RGATCY	2 cut(s)	48, 1090
BstYI	RGATCY	2 cut(s)	48, 1090
Bsu15I	ATCGAT	1 cut(s)	642
BsuRI	GGCC	1 cut(s)	424
BsuTUI	ATCGAT	1 cut(s)	642
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	66, 1128
BtsI	GCAGTG	1 cut(s)	577
BtsIMutI	CAGTG	1 cut(s)	577
Cac8I	GCNNGC	3 cut(s)	381, 1099, 1103
CfoI	GCGC	3 cut(s)	172, 298, 1016
Cfr13I	GGNCC	1 cut(s)	422
ClaI	ATCGAT	1 cut(s)	642
CspCI	CAANNNNNGTGG	2 cut(s)	201, 236
CviAII	CATG	4 cut(s)	106, 176, 1019, 1037
DdeI	CTNAG	2 cut(s)	744, 894
DpnI	GATC	6 cut(s)	21, 50, 621, 861, 1059, 1092
DpnII	GATC	6 cut(s)	19, 48, 619, 859, 1057, 1090
DraIII	CACNNNGTG	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
Eco130I	CCWWGG	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	1130
Eco91I	GGTNACC	1 cut(s)	701
EcoNI	CCTNNNNNAGG	1 cut(s)	228
EcoO65I	GGTNACC	1 cut(s)	701
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	1130
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	4 cut(s)	109, 179, 1022, 1040
FaqI	GGGAC	2 cut(s)	671, 677
FatI	CATG	4 cut(s)	105, 175, 1018, 1036
FauNDI	CATATG	1 cut(s)	394
FbaI	TGATCA	2 cut(s)	19, 859
Fnu4HI	GCNGC	3 cut(s)	128, 384, 405
FokI	GGATG	2 cut(s)	73, 1135
FriOI	GRGCYC	1 cut(s)	1130
Fsp4HI	GCNGC	3 cut(s)	128, 384, 405
FspBI	CTAG	4 cut(s)	288, 591, 870, 1106
GlaI	GCGC	3 cut(s)	171, 297, 1015
GluI	GCNGC	3 cut(s)	128, 384, 405
GsaI	CCCAGC	4 cut(s)	781, 850, 918, 1076
GsuI	CTGGAG	1 cut(s)	562
HaeII	RGCGCY	1 cut(s)	1017
HaeIII	GGCC	1 cut(s)	424
HhaI	GCGC	3 cut(s)	172, 298, 1016
Hin1II	CATG	4 cut(s)	109, 179, 1022, 1040
Hin6I	GCGC	3 cut(s)	170, 296, 1014
HinP1I	GCGC	3 cut(s)	170, 296, 1014
HinfI	GANTC	8 cut(s)	101, 472, 565, 575, 644, 670, 805, 898
HphI	GGTGA	5 cut(s)	427, 427, 602, 1034, 1067
Hpy188I	TCNGA	5 cut(s)	100, 669, 897, 988, 1084
Hpy188III	TCNNGA	6 cut(s)	58, 476, 809, 887, 974, 1117
HpyAV	CCTTC	3 cut(s)	421, 662, 893
HpyCH4III	ACNGT	4 cut(s)	182, 193, 637, 701
HpyCH4IV	ACGT	3 cut(s)	399, 518, 1112
HpyCH4V	TGCA	5 cut(s)	6, 127, 404, 509, 932
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	2 cut(s)	744, 894
HpySE526I	ACGT	3 cut(s)	399, 518, 1112
Hsp92II	CATG	4 cut(s)	109, 179, 1022, 1040
HspAI	GCGC	3 cut(s)	170, 296, 1014
Ksp22I	TGATCA	2 cut(s)	19, 859
Kzo9I	GATC	6 cut(s)	19, 48, 619, 859, 1057, 1090
LguI	GCTCTTC	1 cut(s)	369
LmnI	GCTCC	2 cut(s)	33, 878
Lsp1109I	GCAGC	2 cut(s)	139, 416
LweI	GCATC	2 cut(s)	157, 518
MaeI	CTAG	4 cut(s)	288, 591, 870, 1106
MaeII	ACGT	3 cut(s)	399, 518, 1112
MaeIII	GTNAC	4 cut(s)	452, 572, 701, 833
MalI	GATC	6 cut(s)	21, 50, 621, 861, 1059, 1092
MboI	GATC	6 cut(s)	19, 48, 619, 859, 1057, 1090
MboII	GAAGA	5 cut(s)	87, 386, 526, 570, 962
MflI	RGATCY	2 cut(s)	48, 1090
MhlI	GDGCHC	2 cut(s)	598, 1130
MlyI	GAGTC	3 cut(s)	110, 559, 569
MmeI	TCCRAC	2 cut(s)	337, 1024
MnlI	CCTC	9 cut(s)	224, 232, 269, 689, 705, 753, 970, 1000, 1113
MseI	TTAA	1 cut(s)	498
MslI	CAYNNNNRTG	1 cut(s)	1023
MvnI	CGCG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	389
NcoI	CCATGG	1 cut(s)	105
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	6 cut(s)	19, 48, 619, 859, 1057, 1090
NlaIII	CATG	4 cut(s)	109, 179, 1022, 1040
NlaIV	GGNNCC	2 cut(s)	29, 1092
NmuCI	GTSAC	1 cut(s)	572
PciSI	GCTCTTC	1 cut(s)	369
PfeI	GAWTC	5 cut(s)	472, 644, 670, 805, 898
PkrI	GCNGC	3 cut(s)	129, 385, 406
PleI	GAGTC	3 cut(s)	109, 559, 569
PpsI	GAGTC	3 cut(s)	109, 559, 569
PshBI	ATTAAT	1 cut(s)	498
PsiI	TTATAA	1 cut(s)	248
Psp1406I	AACGTT	1 cut(s)	1112
PspEI	GGTNACC	1 cut(s)	701
PspFI	CCCAGC	4 cut(s)	777, 846, 914, 1072
PspN4I	GGNNCC	2 cut(s)	29, 1092
PspPI	GGNCC	1 cut(s)	422
PsrI	GAACNNNNNNTAC	2 cut(s)	352, 384
PsuI	RGATCY	2 cut(s)	48, 1090
RseI	CAYNNNNRTG	1 cut(s)	1023
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	3 cut(s)	128, 384, 405
Sau3AI	GATC	6 cut(s)	19, 48, 619, 859, 1057, 1090
Sau96I	GGNCC	1 cut(s)	422
SchI	GAGTC	3 cut(s)	110, 559, 569
SduI	GDGCHC	2 cut(s)	598, 1130
SfaNI	GCATC	2 cut(s)	157, 518
SmiMI	CAYNNNNRTG	1 cut(s)	1023
SmlI	CTYRAG	2 cut(s)	974, 1117
SmoI	CTYRAG	2 cut(s)	974, 1117
SsiI	CCGC	1 cut(s)	384
SspMI	CTAG	4 cut(s)	288, 591, 870, 1106
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	4 cut(s)	182, 193, 637, 701
TaiI	ACGT	3 cut(s)	402, 521, 1115
TaqI	TCGA	3 cut(s)	65, 512, 642
TauI	GCSGC	1 cut(s)	386
TfiI	GAWTC	5 cut(s)	472, 644, 670, 805, 898
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	1 cut(s)	577
TseFI	GTSAC	1 cut(s)	572
TseI	GCWGC	2 cut(s)	127, 404
Tsp45I	GTSAC	1 cut(s)	572
TspDTI	ATGAA	1 cut(s)	83
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	1 cut(s)	577
VspI	ATTAAT	1 cut(s)	498
XagI	CCTNNNNNAGG	1 cut(s)	228
XapI	RAATTY	2 cut(s)	488, 953
XspI	CTAG	4 cut(s)	288, 591, 870, 1106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.