Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002546

Physical Location & Seq

Genomic Coordinates Forward (+)

23876653 .. 23878593

Gene Structure 1941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023445

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGATAAGGGTAAGAGGGAGGAGAGGGTTCCCCAATTTTGATATTAGTCTATATGATGTCCAAGTCATTCTGGATAGCACAACCTTTCCAATAAAAGGTGCTTCGAAGACCATAAAGCGGAGTTCAATTTATGATGTGCTTCAAAAGATAAGAAAGACTCGCAACTTCCCCAGCTCAACACCTAGTGCCCCTCCATCACTTCACCCAATAGATCAAACTCAAACAACGGCAATCGATTCAAGCCTTCAGTATCAATTTCCGAGTCTGCGAGTAAAAGAGGATGCAGCTAGAGCTCATGACCTAGCTGCTCTAAAATTATGGGGCGAGTCTGCGAGTTTGAATTGTCCGTTGAGCAACTACCTGAATGACCTGGAAGAAATGAAGTCATTTACGAAGAAGGAATACTTTCTACACGTCAGAAAGAACGCGGACAATAAAAAATGGCAAGTTAGGTTAGGAAAAGGAAAAGACATTGATAGCATTTACGTGGGAATATTTGATACGGAAGAGCAAGCCGCCGAAACATATGACCTTCCAGCTATAAGGGTGAAAAGGCCGAAAGCAATCACCAATTTTGATAAAAGTAACTATGATATCAAACAGATTCTTGAAGGCCCAAAATTTCTAATTGAAAAAGGTGCATCGAAGACATTGAAGCGGAGTTCAGTTGATGATGTGCTTCAAAAGAGAAGAAAGACTCGCAATGTCTCCAGCTCAACCCCTAGTGCCCCACCATCACTTCACCCAATAGATCAAACTAAACTAACGGCAATCGATTCAAGCCTTCAGAATCAATTTCAGATCCCTTCCCTCCAAGTTCCTGTCCTTCACGGTTACCAAAACCCTACCTTTGATGCAAACCGAAGTTTCAGTCCTCAGTATGACTATGGTGGATGTGAGCCAACAGCCCAATTTCAACCTATCATACCCGTATTGAATCAAGAGTTTCCATCTCACCAGTACTATAACGGCAATTCCCAGCACCACCTTGATCAAACCCCTAGCTCCCAGTTCCTTCAAGAAACTCAGAACCCTAATCTTGTTGCTGGGTTGAACAACCTTGCAAGTGATAGCTGTATGGAAGACTTTTCCAGCAGTCAGGTTGGAAACGTTCTTGAGGATGAGCCCACAACGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010449 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0035266 GO:0040007 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098727 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

380

Amino Acids

42.63

Weight (kDa)

8.24

Isoelectric Point (pI)

55.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23031
malus_domestica	MD17G1047700.v1.1
prunus_persica	Prupe.7G069100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480851 RchiOBHm_Chr3g0480891
rosa_laevigata	RLG00000023444 RLG00000023445 RLG00000023447 RLG00000034573
rosa_multiflora	Rmu_sc0004058.1_g000024 Rmu_sc0004838.1_g000011 Rmu_sc0006028.1_g000028 Rmu_sc0012984.1_g000002 Rmu_sc0012984.1_g000013
rosa_roxburghii	Rroxscaffold_1G00032960 Rroxscaffold_6G00400920 Rroxscaffold_6G00400960
rosa_rugosa	Rorug03G0186900 Rorug03G0187000 Rorug03G0187000 Rorug03G0187200 Rorug03G0187300 Rorug05G0241400
rosa_samantha	Rh3AG238500 Rh3AG238600 Rh3BG272000 Rh3BG272500 Rh3BG272700 Rh3BG272800 Rh3CG267800 Rh3CG268300 Rh3DG264100 Rh3DG264400 Rh5AG321600 Rh5BG331900 Rh5CG357200 Rh5DG343700
rosa_wichuraiana	Rw0G006160 Rw3G021350 Rw3G021360 Rw5G030350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	428
AciI	CCGC	4 cut(s)	118, 428, 516, 658
AclI	AACGTT	1 cut(s)	1110
AclWI	GGATC	1 cut(s)	796
AcsI	RAATTY	1 cut(s)	620
AcuI	CTGAAG	2 cut(s)	230, 770
AdeI	CACNNNGTG	1 cut(s)	185
AfaI	GTAC	1 cut(s)	962
AfiI	CCNNNNNNNGG	2 cut(s)	95, 117
AflIII	ACRYGT	1 cut(s)	412
AjiI	CACGTC	1 cut(s)	415
AjnI	CCWGG	1 cut(s)	369
AluBI	AGCT	8 cut(s)	174, 287, 293, 305, 539, 714, 1005, 1074
AluI	AGCT	8 cut(s)	174, 287, 293, 305, 539, 714, 1005, 1074
Alw21I	GWGCWC	1 cut(s)	295
Alw26I	GTCTC	1 cut(s)	712
AlwI	GGATC	1 cut(s)	796
AoxI	GGCC	2 cut(s)	554, 613
ApeKI	GCWGC	2 cut(s)	284, 305
ApoI	RAATTY	1 cut(s)	620
ArsI	GACNNNNNNTTYG	2 cut(s)	856, 888
Asp700I	GAANNNNTTC	1 cut(s)	405
AspS9I	GGNCC	1 cut(s)	614
AsuHPI	GGTGA	5 cut(s)	194, 559, 559, 734, 947
AsuII	TTCGAA	1 cut(s)	104
BaeGI	GKGCMC	2 cut(s)	190, 730
BanII	GRGCYC	2 cut(s)	295, 1128
BarI	GAAGNNNNNNTAC	2 cut(s)	386, 418
BbsI	GAAGAC	3 cut(s)	113, 653, 1089
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	2 cut(s)	292, 296
BccI	CCATC	3 cut(s)	202, 742, 958
BceAI	ACGGC	3 cut(s)	243, 783, 985
BciT130I	CCWGG	1 cut(s)	371
BclI	TGATCA	1 cut(s)	991
BcoDI	GTCTC	1 cut(s)	712
BfaI	CTAG	5 cut(s)	183, 288, 302, 723, 1002
BisI	GCNGC	3 cut(s)	285, 306, 516
BlsI	GCNGC	3 cut(s)	286, 307, 517
BmcAI	AGTACT	1 cut(s)	962
Bme1390I	CCNGG	1 cut(s)	371
BmgBI	CACGTC	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	614
BmiI	GGNNCC	1 cut(s)	29
BmrFI	CCNGG	1 cut(s)	371
BmrI	ACTGGG	1 cut(s)	1003
BmsI	GCATC	3 cut(s)	271, 650, 844
BmuI	ACTGGG	1 cut(s)	1003
BpiI	GAAGAC	3 cut(s)	113, 653, 1089
BpmI	CTGGAG	1 cut(s)	694
Bpu14I	TTCGAA	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	1136
Bsa29I	ATCGAT	2 cut(s)	234, 774
BsaAI	YACGTR	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 117
Bse1I	ACTGG	2 cut(s)	958, 1009
Bse3DI	GCAATG	1 cut(s)	709
BseBI	CCWGG	1 cut(s)	371
BseCI	ATCGAT	2 cut(s)	234, 774
BseGI	GGATG	3 cut(s)	286, 899, 1126
BseLI	CCNNNNNNNGG	2 cut(s)	95, 117
BseMI	GCAATG	1 cut(s)	709
BseMII	CTCAG	2 cut(s)	890, 1040
BseNI	ACTGG	2 cut(s)	958, 1009
BseRI	GAGGAG	1 cut(s)	34
BseSI	GKGCMC	2 cut(s)	190, 730
BseXI	GCAGC	2 cut(s)	292, 296
BseYI	CCCAGC	3 cut(s)	170, 978, 1046
Bsh1236I	CGCG	1 cut(s)	428
BshFI	GGCC	2 cut(s)	556, 615
BshVI	ATCGAT	2 cut(s)	234, 774
BsiHKAI	GWGCWC	1 cut(s)	295
BslI	CCNNNNNNNGG	2 cut(s)	95, 117
BsmAI	GTCTC	1 cut(s)	712
BsnI	GGCC	2 cut(s)	556, 615
Bsp119I	TTCGAA	1 cut(s)	104
Bsp1286I	GDGCHC	4 cut(s)	190, 295, 730, 1128
Bsp143I	GATC	4 cut(s)	211, 751, 801, 991
BspACI	CCGC	4 cut(s)	118, 428, 516, 658
BspANI	GGCC	2 cut(s)	556, 615
BspCNI	CTCAG	2 cut(s)	889, 1039
BspDI	ATCGAT	2 cut(s)	234, 774
BspFNI	CGCG	1 cut(s)	428
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	29
BspPI	GGATC	1 cut(s)	796
BspQI	GCTCTTC	1 cut(s)	501
BspT104I	TTCGAA	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	709
BsrI	ACTGG	2 cut(s)	958, 1009
BssMI	GATC	4 cut(s)	211, 751, 801, 991
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	1 cut(s)	833
Bst6I	CTCTTC	1 cut(s)	501
BstBAI	YACGTR	1 cut(s)	487
BstBI	TTCGAA	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	2 cut(s)	876, 1026
BstEII	GGTNACC	1 cut(s)	833
BstF5I	GGATG	3 cut(s)	286, 899, 1126
BstFNI	CGCG	1 cut(s)	428
BstKTI	GATC	4 cut(s)	214, 754, 804, 994
BstMAI	GTCTC	1 cut(s)	712
BstMBI	GATC	4 cut(s)	211, 751, 801, 991
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	1 cut(s)	371
BstPI	GGTNACC	1 cut(s)	833
BstSCI	CCNGG	1 cut(s)	369
BstSLI	GKGCMC	2 cut(s)	190, 730
BstUI	CGCG	1 cut(s)	428
BstV1I	GCAGC	2 cut(s)	292, 296
BstV2I	GAAGAC	3 cut(s)	113, 653, 1089
BstX2I	RGATCY	1 cut(s)	801
BstYI	RGATCY	1 cut(s)	801
Bsu15I	ATCGAT	2 cut(s)	234, 774
BsuRI	GGCC	2 cut(s)	556, 615
BsuTUI	ATCGAT	2 cut(s)	234, 774
BtrI	CACGTC	1 cut(s)	415
BtsCI	GGATG	3 cut(s)	286, 899, 1126
Cac8I	GCNNGC	1 cut(s)	513
CciI	TCATGA	1 cut(s)	295
Cfr13I	GGNCC	1 cut(s)	614
ClaI	ATCGAT	2 cut(s)	234, 774
Csp6I	GTAC	1 cut(s)	961
CviAII	CATG	1 cut(s)	296
CviQI	GTAC	1 cut(s)	961
DdeI	CTNAG	2 cut(s)	876, 1026
DpnI	GATC	4 cut(s)	213, 753, 803, 993
DpnII	GATC	4 cut(s)	211, 751, 801, 991
DraIII	CACNNNGTG	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Ecl136II	GAGCTC	1 cut(s)	293
Eco24I	GRGCYC	2 cut(s)	295, 1128
Eco32I	GATATC	1 cut(s)	595
Eco53kI	GAGCTC	1 cut(s)	293
Eco57I	CTGAAG	2 cut(s)	230, 770
Eco91I	GGTNACC	1 cut(s)	833
EcoICRI	GAGCTC	1 cut(s)	293
EcoO65I	GGTNACC	1 cut(s)	833
EcoRII	CCWGG	1 cut(s)	369
EcoRV	GATATC	1 cut(s)	595
EcoT38I	GRGCYC	2 cut(s)	295, 1128
FaeI	CATG	1 cut(s)	299
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FatI	CATG	1 cut(s)	295
FauNDI	CATATG	1 cut(s)	526
FbaI	TGATCA	1 cut(s)	991
Fnu4HI	GCNGC	3 cut(s)	285, 306, 516
FokI	GGATG	3 cut(s)	293, 906, 1133
FriOI	GRGCYC	2 cut(s)	295, 1128
Fsp4HI	GCNGC	3 cut(s)	285, 306, 516
FspBI	CTAG	5 cut(s)	183, 288, 302, 723, 1002
GluI	GCNGC	3 cut(s)	285, 306, 516
GsaI	CCCAGC	3 cut(s)	174, 982, 1050
GsuI	CTGGAG	1 cut(s)	694
HaeIII	GGCC	2 cut(s)	556, 615
Hin1II	CATG	1 cut(s)	299
HinfI	GANTC	9 cut(s)	157, 236, 262, 326, 604, 697, 776, 790, 937
HphI	GGTGA	5 cut(s)	194, 559, 559, 734, 947
Hpy188I	TCNGA	5 cut(s)	261, 419, 789, 801, 1029
Hpy188III	TCNNGA	7 cut(s)	71, 296, 608, 941, 1019, 1115, 1137
HpyAV	CCTTC	8 cut(s)	254, 391, 542, 605, 794, 816, 836, 1025
HpyCH4III	ACNGT	1 cut(s)	833
HpyCH4IV	ACGT	4 cut(s)	414, 486, 1110, 1133
HpyCH4V	TGCA	4 cut(s)	284, 641, 857, 1064
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	2 cut(s)	876, 1026
HpySE526I	ACGT	4 cut(s)	414, 486, 1110, 1133
Hsp92II	CATG	1 cut(s)	299
Ksp22I	TGATCA	1 cut(s)	991
Kzo9I	GATC	4 cut(s)	211, 751, 801, 991
LguI	GCTCTTC	1 cut(s)	501
LmnI	GCTCC	1 cut(s)	1010
Lsp1109I	GCAGC	2 cut(s)	292, 296
LweI	GCATC	3 cut(s)	271, 650, 844
MaeI	CTAG	5 cut(s)	183, 288, 302, 723, 1002
MaeII	ACGT	4 cut(s)	414, 486, 1110, 1133
MaeIII	GTNAC	2 cut(s)	584, 833
MalI	GATC	4 cut(s)	213, 753, 803, 993
MboI	GATC	4 cut(s)	211, 751, 801, 991
MboII	GAAGA	7 cut(s)	118, 386, 406, 518, 658, 702, 1094
MflI	RGATCY	1 cut(s)	801
MhlI	GDGCHC	4 cut(s)	190, 295, 730, 1128
MlyI	GAGTC	4 cut(s)	151, 271, 335, 691
MmeI	TCCRAC	1 cut(s)	1084
MnlI	CCTC	8 cut(s)	8, 12, 17, 201, 271, 821, 885, 1111
MroXI	GAANNNNTTC	1 cut(s)	405
MslI	CAYNNNNRTG	1 cut(s)	485
MspR9I	CCNGG	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	371
MvnI	CGCG	1 cut(s)	428
MwoI	GCNNNNNNNGC	1 cut(s)	290
NdeI	CATATG	1 cut(s)	526
NdeII	GATC	4 cut(s)	211, 751, 801, 991
NlaIII	CATG	1 cut(s)	299
NlaIV	GGNNCC	1 cut(s)	29
NspV	TTCGAA	1 cut(s)	104
PagI	TCATGA	1 cut(s)	295
PciSI	GCTCTTC	1 cut(s)	501
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	5 cut(s)	236, 604, 776, 790, 937
PkrI	GCNGC	3 cut(s)	286, 307, 517
PleI	GAGTC	4 cut(s)	151, 270, 334, 691
PpsI	GAGTC	4 cut(s)	151, 270, 334, 691
Ppu21I	YACGTR	1 cut(s)	487
Psp124BI	GAGCTC	1 cut(s)	295
Psp1406I	AACGTT	1 cut(s)	1110
Psp6I	CCWGG	1 cut(s)	369
PspEI	GGTNACC	1 cut(s)	833
PspFI	CCCAGC	3 cut(s)	170, 978, 1046
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	1 cut(s)	29
PspPI	GGNCC	1 cut(s)	614
PsuI	RGATCY	1 cut(s)	801
RsaI	GTAC	1 cut(s)	962
RsaNI	GTAC	1 cut(s)	961
RseI	CAYNNNNRTG	1 cut(s)	485
SacI	GAGCTC	1 cut(s)	295
SapI	GCTCTTC	1 cut(s)	501
SatI	GCNGC	3 cut(s)	285, 306, 516
Sau3AI	GATC	4 cut(s)	211, 751, 801, 991
Sau96I	GGNCC	1 cut(s)	614
ScaI	AGTACT	1 cut(s)	962
SchI	GAGTC	4 cut(s)	151, 271, 335, 691
ScrFI	CCNGG	1 cut(s)	371
SduI	GDGCHC	4 cut(s)	190, 295, 730, 1128
SfaNI	GCATC	3 cut(s)	271, 650, 844
SfuI	TTCGAA	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	485
SmlI	CTYRAG	1 cut(s)	1115
SmoI	CTYRAG	1 cut(s)	1115
SsiI	CCGC	4 cut(s)	118, 428, 516, 658
SspI	AATATT	1 cut(s)	495
SspMI	CTAG	5 cut(s)	183, 288, 302, 723, 1002
SstI	GAGCTC	1 cut(s)	295
StyD4I	CCNGG	1 cut(s)	369
TaaI	ACNGT	1 cut(s)	833
TaiI	ACGT	4 cut(s)	417, 489, 1113, 1136
TaqI	TCGA	4 cut(s)	104, 234, 644, 774
TatI	WGTACW	1 cut(s)	960
TauI	GCSGC	1 cut(s)	518
TfiI	GAWTC	5 cut(s)	236, 604, 776, 790, 937
TseI	GCWGC	2 cut(s)	284, 305
TspDTI	ATGAA	1 cut(s)	395
TspGWI	ACGGA	2 cut(s)	336, 518
XapI	RAATTY	1 cut(s)	620
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	5 cut(s)	183, 288, 302, 723, 1002
ZrmI	AGTACT	1 cut(s)	962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.