Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002546

Physical Location & Seq

Genomic Coordinates Reverse (-)

26818077 .. 26821108

Gene Structure 3032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44589

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGTCAGCCACAATTTACTCAACAACGAGACCAGTGCTAGTGGAGGTGGAACAAATTCTGCGGCTACCAAACATAGACGATCCCAAAGAAAAGGCAAATCATTTGGTAACAGTAGCTCCATGTATCGAGGTGTTACAAAGTGGATTTGAAGTAGAAGAGGATGCAGCTAGAGCTCATGACCTAGCTGCTCTAAAATTATGGGGAGAGTCTGCGAGTTTGAATTTTCCGTTAAGCAACTACGTGAATGACCTGGAAGAAATGAAGTCATTTACGAAGAAGGAATACCTTCTACACATCAGAAGCAAGACGGGTTTAGCCAAGACGGTATCCAATTACCGTGGAGTTTCGAGGAACGCGCACAACAAAAAATGGCAAGTTAGGTTAGGAAAAGGAAAAGACATTGATAGCATTTATGTTGGAACATTTGATACCGAAGAGCAAGCCGGCGAAGCATATGACGTTGCAGCTATAAGGGTGAAAGGGCCGAAAGCAATCACCAATTTTGATAAAAGTAACTACGATGTCAAACAGATTCTTGAAAGCCCAAAATTTCTAATTGATAAAGGTGCATCGAAGACGTTGAAGCGAAGTTCAGTTGATGATGTGCTTCAAAAGAGAAGAAAGACTCGCAGTGACTCCAGCTCAACCCCTAGTGCCCCACCATCACTTCACCTAATAGATCAAACTCAACCAACGGTAATCGATTCAAGCCTTCAATATCAATTTCCGATCCCTTACCTCCAAGTTCCAGTCCCTCACGGTTACCAAAACCCTATCTTTGAAGCAAACCGAAGTTTCAGTCCTCAGTATGACTATGGTGGAAGTGAGCCAATAGCCCAGCTTCAACCTATCATACCCTTATTGAATCAAGAGTTTCCATCTCATCAGTATTGTAACAGCAATTCCCAGCACCACCTTGATCAAACCCCTAGCTCCCAGTTCCTTCAAGACACTCAGAACCCTAATCTTGTTGCTGGGTTGAACAACCTTGCAAGTGATAGCTGTATGGAAGAATTTTCCAGCAGTCAGGTTCATGAGGCGAGTTTCGAGATGATGGGGACGAACGAGGGTGGCGCTCATGGTGATGGTAGCAGTCATGTAGTTGGAAATCTTGGTGATCCTGTGTTTGGGATGGGCAATTCTGACTTGGATCCTGCGAGCTGGCTAGAAACGTTCTTGAGGATGAGCCCACAACGTCTTGATTCCATGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010449 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0035266 GO:0040007 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098727 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

404

Amino Acids

44.8

Weight (kDa)

5.4

Isoelectric Point (pI)

56.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	110 - 161	3.7e-08	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23031
malus_domestica	MD17G1047700.v1.1
prunus_persica	Prupe.7G069100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480851 RchiOBHm_Chr3g0480891
rosa_laevigata	RLG00000023444 RLG00000023445 RLG00000023447 RLG00000034573
rosa_multiflora	Rmu_sc0004058.1_g000024 Rmu_sc0004838.1_g000011 Rmu_sc0006028.1_g000028 Rmu_sc0012984.1_g000002 Rmu_sc0012984.1_g000013
rosa_roxburghii	Rroxscaffold_1G00032960 Rroxscaffold_6G00400920 Rroxscaffold_6G00400960
rosa_rugosa	Rorug03G0186900 Rorug03G0187000 Rorug03G0187000 Rorug03G0187200 Rorug03G0187300 Rorug05G0241400
rosa_samantha	Rh3AG238500 Rh3AG238600 Rh3BG272000 Rh3BG272500 Rh3BG272700 Rh3BG272800 Rh3CG267800 Rh3CG268300 Rh3DG264100 Rh3DG264400 Rh5AG321600 Rh5BG331900 Rh5CG357200 Rh5DG343700
rosa_wichuraiana	Rw0G006160 Rw3G021350 Rw3G021360 Rw5G030350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	356
AciI	CCGC	1 cut(s)	61
AclI	AACGTT	1 cut(s)	1172
AclWI	GGATC	5 cut(s)	74, 724, 1112, 1145, 1158
AcsI	RAATTY	4 cut(s)	54, 220, 548, 1013
AfiI	CCNNNNNNNGG	1 cut(s)	1127
AjnI	CCWGG	1 cut(s)	249
Alw21I	GWGCWC	1 cut(s)	175
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	5 cut(s)	74, 724, 1112, 1145, 1158
AoxI	GGCC	1 cut(s)	482
ApeKI	GCWGC	3 cut(s)	164, 185, 464
ApoI	RAATTY	4 cut(s)	54, 220, 548, 1013
ArsI	GACNNNNNNTTYG	2 cut(s)	784, 816
Asp700I	GAANNNNTTC	2 cut(s)	54, 285
AspLEI	GCGC	2 cut(s)	358, 1076
AspS9I	GGNCC	1 cut(s)	482
AsuHPI	GGTGA	5 cut(s)	487, 487, 662, 1094, 1127
BaeGI	GKGCMC	1 cut(s)	658
BamHI	GGATCC	1 cut(s)	1150
BanII	GRGCYC	2 cut(s)	175, 1190
BarI	GAAGNNNNNNTAC	2 cut(s)	266, 298
BbsI	GAAGAC	1 cut(s)	581
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	3 cut(s)	172, 176, 476
BccI	CCATC	5 cut(s)	670, 886, 1048, 1079, 1126
BcgI	CGANNNNNNTGC	2 cut(s)	16, 50
BciT130I	CCWGG	1 cut(s)	251
BciVI	GTATCC	1 cut(s)	337
BclI	TGATCA	1 cut(s)	919
BcoDI	GTCTC	1 cut(s)	22
BfaI	CTAG	6 cut(s)	38, 168, 182, 651, 930, 1166
BfoI	RGCGCY	1 cut(s)	1077
BfuI	GTATCC	1 cut(s)	337
BisI	GCNGC	4 cut(s)	62, 165, 186, 465
BlsI	GCNGC	4 cut(s)	63, 166, 187, 466
Bme1390I	CCNGG	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	482
BmiI	GGNNCC	1 cut(s)	1152
BmrFI	CCNGG	1 cut(s)	251
BmrI	ACTGGG	1 cut(s)	931
BmsI	GCATC	2 cut(s)	151, 578
BmuI	ACTGGG	1 cut(s)	931
BpiI	GAAGAC	1 cut(s)	581
BpmI	CTGGAG	1 cut(s)	622
BpuEI	CTTGAG	1 cut(s)	1198
Bsa29I	ATCGAT	1 cut(s)	702
BsaAI	YACGTR	1 cut(s)	241
BsaI	GGTCTC	1 cut(s)	22
BsaJI	CCNNGG	2 cut(s)	337, 1206
BsaXI	ACNNNNNCTCC	2 cut(s)	100, 130
Bsc4I	CCNNNNNNNGG	1 cut(s)	1127
Bse118I	RCCGGY	1 cut(s)	443
Bse1I	ACTGG	3 cut(s)	32, 749, 937
BseBI	CCWGG	1 cut(s)	251
BseCI	ATCGAT	1 cut(s)	702
BseDI	CCNNGG	2 cut(s)	337, 1206
BseGI	GGATG	3 cut(s)	166, 1137, 1188
BseLI	CCNNNNNNNGG	1 cut(s)	1127
BseMII	CTCAG	2 cut(s)	818, 968
BseNI	ACTGG	3 cut(s)	32, 749, 937
BseSI	GKGCMC	1 cut(s)	658
BseXI	GCAGC	3 cut(s)	172, 176, 476
BseYI	CCCAGC	3 cut(s)	837, 906, 974
Bsh1236I	CGCG	1 cut(s)	356
BshFI	GGCC	1 cut(s)	484
BshVI	ATCGAT	1 cut(s)	702
BsiHKAI	GWGCWC	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	444
BslFI	GGGAC	2 cut(s)	737, 1072
BslI	CCNNNNNNNGG	1 cut(s)	1127
BsmAI	GTCTC	1 cut(s)	22
BsmFI	GGGAC	2 cut(s)	737, 1072
BsnI	GGCC	1 cut(s)	484
Bso31I	GGTCTC	1 cut(s)	22
Bsp1286I	GDGCHC	3 cut(s)	175, 658, 1190
Bsp143I	GATC	6 cut(s)	79, 679, 729, 919, 1117, 1150
Bsp19I	CCATGG	1 cut(s)	1206
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	1 cut(s)	484
BspCNI	CTCAG	2 cut(s)	817, 967
BspDI	ATCGAT	1 cut(s)	702
BspFNI	CGCG	1 cut(s)	356
BspHI	TCATGA	2 cut(s)	175, 1033
BspLI	GGNNCC	1 cut(s)	1152
BspPI	GGATC	5 cut(s)	74, 724, 1112, 1145, 1158
BspQI	GCTCTTC	1 cut(s)	429
BspTNI	GGTCTC	1 cut(s)	22
BsrFI	RCCGGY	1 cut(s)	443
BsrI	ACTGG	3 cut(s)	32, 749, 937
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	2 cut(s)	337, 1206
BssMI	GATC	6 cut(s)	79, 679, 729, 919, 1117, 1150
BssT1I	CCWWGG	1 cut(s)	1206
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	5 cut(s)	112, 325, 338, 697, 761
Bst6I	CTCTTC	2 cut(s)	150, 429
BstBAI	YACGTR	1 cut(s)	241
BstC8I	GCNNGC	4 cut(s)	441, 445, 1159, 1163
BstDEI	CTNAG	2 cut(s)	804, 954
BstDSI	CCRYGG	2 cut(s)	337, 1206
BstEII	GGTNACC	1 cut(s)	761
BstF5I	GGATG	3 cut(s)	166, 1137, 1188
BstFNI	CGCG	1 cut(s)	356
BstH2I	RGCGCY	1 cut(s)	1077
BstHHI	GCGC	2 cut(s)	358, 1076
BstKTI	GATC	6 cut(s)	82, 682, 732, 922, 1120, 1153
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	6 cut(s)	79, 679, 729, 919, 1117, 1150
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 449
BstNI	CCWGG	1 cut(s)	251
BstPI	GGTNACC	1 cut(s)	761
BstSCI	CCNGG	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	658
BstUI	CGCG	1 cut(s)	356
BstV1I	GCAGC	3 cut(s)	172, 176, 476
BstV2I	GAAGAC	1 cut(s)	581
BstX2I	RGATCY	1 cut(s)	1150
BstYI	RGATCY	1 cut(s)	1150
Bsu15I	ATCGAT	1 cut(s)	702
BsuI	GTATCC	1 cut(s)	337
BsuRI	GGCC	1 cut(s)	484
BsuTUI	ATCGAT	1 cut(s)	702
BtgI	CCRYGG	2 cut(s)	337, 1206
BtsCI	GGATG	3 cut(s)	166, 1137, 1188
BtsI	GCAGTG	1 cut(s)	637
BtsIMutI	CAGTG	2 cut(s)	39, 637
Cac8I	GCNNGC	4 cut(s)	441, 445, 1159, 1163
CciI	TCATGA	2 cut(s)	175, 1033
CfoI	GCGC	2 cut(s)	358, 1076
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	1 cut(s)	482
ClaI	ATCGAT	1 cut(s)	702
CspCI	CAANNNNNGTGG	2 cut(s)	319, 354
CviAII	CATG	6 cut(s)	120, 176, 1034, 1079, 1097, 1207
DdeI	CTNAG	2 cut(s)	804, 954
DpnI	GATC	6 cut(s)	81, 681, 731, 921, 1119, 1152
DpnII	GATC	6 cut(s)	79, 679, 729, 919, 1117, 1150
Eam1104I	CTCTTC	2 cut(s)	150, 429
EarI	CTCTTC	2 cut(s)	150, 429
Ecl136II	GAGCTC	1 cut(s)	173
Eco130I	CCWWGG	1 cut(s)	1206
Eco24I	GRGCYC	2 cut(s)	175, 1190
Eco31I	GGTCTC	1 cut(s)	22
Eco53kI	GAGCTC	1 cut(s)	173
Eco91I	GGTNACC	1 cut(s)	761
EcoICRI	GAGCTC	1 cut(s)	173
EcoO65I	GGTNACC	1 cut(s)	761
EcoRII	CCWGG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	1206
EcoT38I	GRGCYC	2 cut(s)	175, 1190
ErhI	CCWWGG	1 cut(s)	1206
FaeI	CATG	6 cut(s)	123, 179, 1037, 1082, 1100, 1210
FaqI	GGGAC	2 cut(s)	737, 1072
FatI	CATG	6 cut(s)	119, 175, 1033, 1078, 1096, 1206
FauNDI	CATATG	1 cut(s)	454
FbaI	TGATCA	1 cut(s)	919
Fnu4HI	GCNGC	4 cut(s)	62, 165, 186, 465
FokI	GGATG	3 cut(s)	173, 1144, 1195
FriOI	GRGCYC	2 cut(s)	175, 1190
Fsp4HI	GCNGC	4 cut(s)	62, 165, 186, 465
FspBI	CTAG	6 cut(s)	38, 168, 182, 651, 930, 1166
GlaI	GCGC	2 cut(s)	357, 1075
GluI	GCNGC	4 cut(s)	62, 165, 186, 465
GsaI	CCCAGC	3 cut(s)	841, 910, 978
GsuI	CTGGAG	1 cut(s)	622
HaeII	RGCGCY	1 cut(s)	1077
HaeIII	GGCC	1 cut(s)	484
HapII	CCGG	1 cut(s)	444
HhaI	GCGC	2 cut(s)	358, 1076
Hin1II	CATG	6 cut(s)	123, 179, 1037, 1082, 1100, 1210
Hin6I	GCGC	2 cut(s)	356, 1074
HinP1I	GCGC	2 cut(s)	356, 1074
HinfI	GANTC	7 cut(s)	206, 532, 625, 635, 704, 865, 1202
HpaII	CCGG	1 cut(s)	444
HphI	GGTGA	5 cut(s)	487, 487, 662, 1094, 1127
Hpy188I	TCNGA	5 cut(s)	299, 729, 957, 1144, 1214
Hpy188III	TCNNGA	8 cut(s)	176, 536, 869, 947, 1034, 1048, 1177, 1199
HpyAV	CCTTC	4 cut(s)	271, 296, 722, 953
HpyCH4III	ACNGT	5 cut(s)	112, 325, 338, 697, 761
HpyCH4IV	ACGT	5 cut(s)	240, 459, 578, 1172, 1195
HpyCH4V	TGCA	4 cut(s)	164, 464, 569, 992
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 449
HpyF3I	CTNAG	2 cut(s)	804, 954
HpySE526I	ACGT	5 cut(s)	240, 459, 578, 1172, 1195
Hsp92II	CATG	6 cut(s)	123, 179, 1037, 1082, 1100, 1210
HspAI	GCGC	2 cut(s)	356, 1074
KroI	GCCGGC	1 cut(s)	443
KroNI	GCCGGC	1 cut(s)	445
Ksp22I	TGATCA	1 cut(s)	919
Kzo9I	GATC	6 cut(s)	79, 679, 729, 919, 1117, 1150
LguI	GCTCTTC	1 cut(s)	429
LmnI	GCTCC	2 cut(s)	121, 938
Lsp1109I	GCAGC	3 cut(s)	172, 176, 476
LweI	GCATC	2 cut(s)	151, 578
MaeI	CTAG	6 cut(s)	38, 168, 182, 651, 930, 1166
MaeII	ACGT	5 cut(s)	240, 459, 578, 1172, 1195
MaeIII	GTNAC	6 cut(s)	106, 132, 512, 632, 761, 893
MalI	GATC	6 cut(s)	81, 681, 731, 921, 1119, 1152
MboI	GATC	6 cut(s)	79, 679, 729, 919, 1117, 1150
MboII	GAAGA	7 cut(s)	167, 266, 286, 446, 586, 630, 1022
MflI	RGATCY	1 cut(s)	1150
MhlI	GDGCHC	3 cut(s)	175, 658, 1190
MlyI	GAGTC	3 cut(s)	215, 619, 629
MmeI	TCCRAC	2 cut(s)	397, 1084
MroNI	GCCGGC	1 cut(s)	443
MroXI	GAANNNNTTC	2 cut(s)	54, 285
MseI	TTAA	1 cut(s)	230
MslI	CAYNNNNRTG	1 cut(s)	1083
MspI	CCGG	1 cut(s)	444
MspR9I	CCNGG	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	251
MvnI	CGCG	1 cut(s)	356
MwoI	GCNNNNNNNGC	2 cut(s)	170, 449
NaeI	GCCGGC	1 cut(s)	445
NcoI	CCATGG	1 cut(s)	1206
NdeI	CATATG	1 cut(s)	454
NdeII	GATC	6 cut(s)	79, 679, 729, 919, 1117, 1150
NgoMIV	GCCGGC	1 cut(s)	443
NlaIII	CATG	6 cut(s)	123, 179, 1037, 1082, 1100, 1210
NlaIV	GGNNCC	1 cut(s)	1152
NmuCI	GTSAC	1 cut(s)	632
PagI	TCATGA	2 cut(s)	175, 1033
PciSI	GCTCTTC	1 cut(s)	429
PdiI	GCCGGC	1 cut(s)	445
PdmI	GAANNNNTTC	2 cut(s)	54, 285
PfeI	GAWTC	4 cut(s)	532, 704, 865, 1202
PkrI	GCNGC	4 cut(s)	63, 166, 187, 466
PleI	GAGTC	3 cut(s)	214, 619, 629
PpsI	GAGTC	3 cut(s)	214, 619, 629
Ppu21I	YACGTR	1 cut(s)	241
Psp124BI	GAGCTC	1 cut(s)	175
Psp1406I	AACGTT	1 cut(s)	1172
Psp6I	CCWGG	1 cut(s)	249
PspEI	GGTNACC	1 cut(s)	761
PspFI	CCCAGC	3 cut(s)	837, 906, 974
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	1152
PspPI	GGNCC	1 cut(s)	482
PsrI	GAACNNNNNNTAC	2 cut(s)	412, 444
PsuI	RGATCY	1 cut(s)	1150
RseI	CAYNNNNRTG	1 cut(s)	1083
SacI	GAGCTC	1 cut(s)	175
SapI	GCTCTTC	1 cut(s)	429
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	4 cut(s)	62, 165, 186, 465
Sau3AI	GATC	6 cut(s)	79, 679, 729, 919, 1117, 1150
Sau96I	GGNCC	1 cut(s)	482
SchI	GAGTC	3 cut(s)	215, 619, 629
ScrFI	CCNGG	1 cut(s)	251
SduI	GDGCHC	3 cut(s)	175, 658, 1190
SfaNI	GCATC	2 cut(s)	151, 578
SmiMI	CAYNNNNRTG	1 cut(s)	1083
SmlI	CTYRAG	1 cut(s)	1177
SmoI	CTYRAG	1 cut(s)	1177
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	6 cut(s)	38, 168, 182, 651, 930, 1166
SstI	GAGCTC	1 cut(s)	175
StyD4I	CCNGG	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	1206
TaaI	ACNGT	5 cut(s)	112, 325, 338, 697, 761
TaiI	ACGT	5 cut(s)	243, 462, 581, 1175, 1198
TaqI	TCGA	5 cut(s)	126, 347, 572, 702, 1047
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	4 cut(s)	532, 704, 865, 1202
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	2 cut(s)	39, 637
TseFI	GTSAC	1 cut(s)	632
TseI	GCWGC	3 cut(s)	164, 185, 464
Tsp45I	GTSAC	1 cut(s)	632
TspDTI	ATGAA	2 cut(s)	275, 1022
TspGWI	ACGGA	1 cut(s)	216
TspRI	CASTG	2 cut(s)	39, 637
XapI	RAATTY	4 cut(s)	54, 220, 548, 1013
XmnI	GAANNNNTTC	2 cut(s)	54, 285
XspI	CTAG	6 cut(s)	38, 168, 182, 651, 930, 1166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.