Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002546

Physical Location & Seq

Genomic Coordinates Reverse (-)

26520531 .. 26523707

Gene Structure 3177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG272000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGAACCAAGGGGAGAATGCTAGTGGAAGTGGCACAAAATCTGCGGAAATAAAACGCAAACGTCGCCCTACTAAAAAGTGTAAACGAACATTATTTGGTGAGAAAAGTGATAATGTGCTCGACCAAGAGAAGAATCCTACTGGAAGTGGACTCAATTCTGTGAAAGTGCAACGTAAACGTCCGCTTACTAAAAAGGGCAAAAAAGCATCTGGTCATCAGAGAAGTTCTAGGTTTCGCGGAGTTACGAGGTACCCAGGACATTTTGAAGCATTTCTATGGGATAATTCTGATCCACAAGTGAAAGGCAAGACAGGCGGATTTCGAGAAGAAGAGCAAGCTGCCAGAGCACATGATCTAGCTGCTTTGAAGTATTGGGGCGACTCTACCCCATTAAACTTCCCTGTGAGTGATTACATGAAGGAATTGGAGGAAATGCAAGCATATACAAAGAAAGACTATTTGCTCCATATTCGAAGAGGAGGGCGGGAAGCAGTGACCAATTTTGATCTAAGCCACTATGATGTCGAAGGTATTCTTGAGAGCCCAAATATTCCAATTGAAAATGGTGCTTCAAAGTTCATAAGGTGGACTGCAGCTGATCATATCATCCAGAGCAGAAGAACCACCCACAATGTTGCCGTTTCACAACTACAAGTTGACAGCTCGGGTAATAACCCGAATATAACCCCAATAGCCCCACCATTATTTGAGCCAACAGTGCAATCCCTAGAAACCCATTGCAATTCAAACCCAGAACAACAATATCCATGCCCCTCCCTCAATCCCAACCAAAATAATGACCAGATCCAAATATTCCGATTCCCGCAGTACTTTAAAAACCCTAACTTTGAATTTGATCATCTTCCTTGCTACCAGAAACCTAATTTCCCAATAAACCCTAGTTTCGATAATTCGGGTAACCATAGTGAAAAGCAGATAGTGCCATCACTCCAGTTTCAACCTATTCTGACCCCAGAGAACCACGAGCTTCAGTTTCATCAGTATAACAGTGATAATTCCCAGCCCCATATGCCTCAAAACCCTAGCTCCTCCAGTCTTCAAGACTTTCAGAACCCTAATTGCCATGAAAACCCTAATATTTTTAGTGAGTTGACTAACCTTCAAAGTGGTAGCGATATCAGGGAATTTCCCAGTGGTCAGGAACCAGTTGTGAGCTTCGCAATGATGGGGACGAACGAGAGTCACTGTGATTGCACCAATACAGTAGAGGAAAATAGAAATTTTGCTGAAGACTTTAGGATGGACAATCCAGACTTGGACATTTCATCTAGCAGCTGGTTCGAAATGTTAATGACCTTAAACAGTTCTGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

445

Amino Acids

50.58

Weight (kDa)

5.94

Isoelectric Point (pI)

54.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23031
malus_domestica	MD17G1047700.v1.1
prunus_persica	Prupe.7G069100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480851 RchiOBHm_Chr3g0480891
rosa_laevigata	RLG00000023444 RLG00000023445 RLG00000023447 RLG00000034573
rosa_multiflora	Rmu_sc0004058.1_g000024 Rmu_sc0004838.1_g000011 Rmu_sc0006028.1_g000028 Rmu_sc0012984.1_g000002 Rmu_sc0012984.1_g000013
rosa_roxburghii	Rroxscaffold_1G00032960 Rroxscaffold_6G00400920 Rroxscaffold_6G00400960
rosa_rugosa	Rorug03G0186900 Rorug03G0187000 Rorug03G0187000 Rorug03G0187200 Rorug03G0187300 Rorug05G0241400
rosa_samantha	Rh3AG238500 Rh3AG238600 Rh3BG272000 Rh3BG272500 Rh3BG272700 Rh3BG272800 Rh3CG267800 Rh3CG268300 Rh3DG264100 Rh3DG264400 Rh5AG321600 Rh5BG331900 Rh5CG357200 Rh5DG343700
rosa_wichuraiana	Rw0G006160 Rw3G021350 Rw3G021360 Rw5G030350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	249
AccB1I	GGYRCC	1 cut(s)	249
AccII	CGCG	1 cut(s)	237
AciI	CCGC	6 cut(s)	44, 182, 237, 315, 484, 824
AclWI	GGATC	2 cut(s)	284, 799
AcsI	RAATTY	3 cut(s)	851, 1145, 1240
AcuI	CTGAAG	2 cut(s)	974, 1269
AfaI	GTAC	2 cut(s)	251, 830
AgsI	TTSAA	9 cut(s)	266, 367, 560, 573, 747, 851, 959, 1061, 1124
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	8 cut(s)	338, 359, 596, 663, 988, 1047, 1176, 1296
AluI	AGCT	8 cut(s)	338, 359, 596, 663, 988, 1047, 1176, 1296
Alw21I	GWGCWC	2 cut(s)	120, 349
AlwI	GGATC	2 cut(s)	284, 799
Ama87I	CYCGRG	1 cut(s)	664
ApeKI	GCWGC	4 cut(s)	338, 359, 593, 1293
ApoI	RAATTY	3 cut(s)	851, 1145, 1240
Asp700I	GAANNNNTTC	2 cut(s)	270, 531
Asp718I	GGTACC	1 cut(s)	249
AsuHPI	GGTGA	1 cut(s)	110
AsuII	TTCGAA	2 cut(s)	472, 1302
AvaI	CYCGRG	1 cut(s)	664
BanI	GGYRCC	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	545
BauI	CACGAG	1 cut(s)	983
BbsI	GAAGAC	2 cut(s)	1049, 1257
Bbv12I	GWGCWC	2 cut(s)	120, 349
BbvI	GCAGC	4 cut(s)	325, 346, 605, 1305
BccI	CCATC	3 cut(s)	952, 1180, 1255
BceAI	ACGGC	1 cut(s)	623
BcgI	CGANNNNNNTGC	2 cut(s)	1282, 1316
BciT130I	CCWGG	1 cut(s)	255
BclI	TGATCA	2 cut(s)	598, 856
BfaI	CTAG	7 cut(s)	21, 228, 356, 728, 900, 1044, 1290
BfmI	CTRYAG	1 cut(s)	591
BisI	GCNGC	4 cut(s)	339, 360, 594, 1294
BlsI	GCNGC	4 cut(s)	340, 361, 595, 1295
BmcAI	AGTACT	1 cut(s)	830
Bme1390I	CCNGG	1 cut(s)	255
BmeT110I	CYCGRG	1 cut(s)	664
BmiI	GGNNCC	2 cut(s)	251, 1164
BmrFI	CCNGG	1 cut(s)	255
BmrI	ACTGGG	1 cut(s)	1146
BmsI	GCATC	1 cut(s)	215
BmuI	ACTGGG	1 cut(s)	1146
BpiI	GAAGAC	2 cut(s)	1049, 1257
BpmI	CTGGAG	2 cut(s)	935, 1036
Bpu14I	TTCGAA	2 cut(s)	472, 1302
BpuEI	CTTGAG	1 cut(s)	557
BsaJI	CCNNGG	2 cut(s)	7, 253
BsaXI	ACNNNNNCTCC	2 cut(s)	1031, 1061
Bse1I	ACTGG	5 cut(s)	145, 952, 1053, 1152, 1166
Bse3DI	GCAATG	2 cut(s)	736, 1188
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	2 cut(s)	7, 253
BseGI	GGATG	2 cut(s)	606, 1266
BseMI	GCAATG	2 cut(s)	736, 1188
BseNI	ACTGG	5 cut(s)	145, 952, 1053, 1152, 1166
BseRI	GAGGAG	2 cut(s)	492, 1039
BseXI	GCAGC	4 cut(s)	325, 346, 605, 1305
BseYI	CCCAGC	1 cut(s)	1020
Bsh1236I	CGCG	1 cut(s)	237
BshNI	GGYRCC	1 cut(s)	249
BsiHKAI	GWGCWC	2 cut(s)	120, 349
BsiHKCI	CYCGRG	1 cut(s)	664
BslFI	GGGAC	1 cut(s)	1204
BsmFI	GGGAC	1 cut(s)	1204
BsmI	GAATGC	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	664
Bsp119I	TTCGAA	2 cut(s)	472, 1302
Bsp1286I	GDGCHC	3 cut(s)	120, 349, 545
Bsp143I	GATC	6 cut(s)	289, 352, 505, 598, 804, 856
BspACI	CCGC	6 cut(s)	44, 182, 237, 315, 484, 824
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	2 cut(s)	251, 1164
BspMAI	CTGCAG	1 cut(s)	595
BspPI	GGATC	2 cut(s)	284, 799
BspQI	GCTCTTC	1 cut(s)	324
BspT104I	TTCGAA	2 cut(s)	472, 1302
BspT107I	GGYRCC	1 cut(s)	249
BsrDI	GCAATG	2 cut(s)	736, 1188
BsrI	ACTGG	5 cut(s)	145, 952, 1053, 1152, 1166
BssECI	CCNNGG	2 cut(s)	7, 253
BssMI	GATC	6 cut(s)	289, 352, 505, 598, 804, 856
BssSI	CACGAG	1 cut(s)	983
BssT1I	CCWWGG	1 cut(s)	7
Bst2BI	CACGAG	1 cut(s)	983
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	5 cut(s)	718, 1010, 1208, 1225, 1325
Bst6I	CTCTTC	2 cut(s)	324, 469
BstAPI	GCANNNNNTGC	1 cut(s)	940
BstBI	TTCGAA	2 cut(s)	472, 1302
BstC8I	GCNNGC	2 cut(s)	336, 438
BstDEI	CTNAG	1 cut(s)	509
BstEII	GGTNACC	1 cut(s)	917
BstF5I	GGATG	2 cut(s)	606, 1266
BstFNI	CGCG	1 cut(s)	237
BstKTI	GATC	6 cut(s)	292, 355, 508, 601, 807, 859
BstMBI	GATC	6 cut(s)	289, 352, 505, 598, 804, 856
BstMWI	GCNNNNNNNGC	6 cut(s)	63, 312, 344, 718, 940, 1030
BstNI	CCWGG	1 cut(s)	255
BstPI	GGTNACC	1 cut(s)	917
BstSCI	CCNGG	1 cut(s)	253
BstSFI	CTRYAG	1 cut(s)	591
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	4 cut(s)	325, 346, 605, 1305
BstV2I	GAAGAC	2 cut(s)	1049, 1257
BstX2I	RGATCY	1 cut(s)	804
BstYI	RGATCY	1 cut(s)	804
BtsCI	GGATG	2 cut(s)	606, 1266
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	5 cut(s)	498, 723, 1015, 1159, 1204
Cac8I	GCNNGC	2 cut(s)	336, 438
Csp6I	GTAC	2 cut(s)	250, 829
CviAII	CATG	4 cut(s)	350, 415, 768, 1085
CviQI	GTAC	2 cut(s)	250, 829
DdeI	CTNAG	1 cut(s)	509
DpnI	GATC	6 cut(s)	291, 354, 507, 600, 806, 858
DpnII	GATC	6 cut(s)	289, 352, 505, 598, 804, 856
DraI	TTTAAA	1 cut(s)	835
Eam1104I	CTCTTC	2 cut(s)	324, 469
EarI	CTCTTC	2 cut(s)	324, 469
EciI	GGCGGA	1 cut(s)	330
Eco130I	CCWWGG	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	545
Eco32I	GATATC	1 cut(s)	1138
Eco57I	CTGAAG	2 cut(s)	974, 1269
Eco88I	CYCGRG	1 cut(s)	664
Eco91I	GGTNACC	1 cut(s)	917
EcoO65I	GGTNACC	1 cut(s)	917
EcoRII	CCWGG	1 cut(s)	253
EcoRV	GATATC	1 cut(s)	1138
EcoT14I	CCWWGG	1 cut(s)	7
EcoT38I	GRGCYC	1 cut(s)	545
ErhI	CCWWGG	1 cut(s)	7
FaeI	CATG	4 cut(s)	353, 418, 771, 1088
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FaqI	GGGAC	1 cut(s)	1204
FatI	CATG	4 cut(s)	349, 414, 767, 1084
FauI	CCCGC	2 cut(s)	477, 831
FauNDI	CATATG	1 cut(s)	1029
FbaI	TGATCA	2 cut(s)	598, 856
Fnu4HI	GCNGC	4 cut(s)	339, 360, 594, 1294
FokI	GGATG	2 cut(s)	593, 1273
FriOI	GRGCYC	1 cut(s)	545
Fsp4HI	GCNGC	4 cut(s)	339, 360, 594, 1294
FspBI	CTAG	7 cut(s)	21, 228, 356, 728, 900, 1044, 1290
GluI	GCNGC	4 cut(s)	339, 360, 594, 1294
GsaI	CCCAGC	1 cut(s)	1024
GsuI	CTGGAG	2 cut(s)	935, 1036
Hin1II	CATG	4 cut(s)	353, 418, 771, 1088
HincII	GTYRAC	2 cut(s)	658, 1113
HindII	GTYRAC	2 cut(s)	658, 1113
HinfI	GANTC	5 cut(s)	133, 150, 380, 819, 1201
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	6 cut(s)	83, 149, 176, 588, 658, 1113
Hpy188I	TCNGA	7 cut(s)	219, 289, 818, 969, 1071, 1330, 1337
Hpy188III	TCNNGA	6 cut(s)	323, 536, 610, 1061, 1160, 1271
Hpy8I	GTNNAC	6 cut(s)	83, 149, 176, 588, 658, 1113
Hpy99I	CGWCG	1 cut(s)	66
HpyAV	CCTTC	3 cut(s)	412, 521, 1130
HpyCH4III	ACNGT	5 cut(s)	718, 1010, 1208, 1225, 1325
HpyCH4IV	ACGT	3 cut(s)	61, 172, 178
HpyCH4V	TGCA	6 cut(s)	169, 436, 593, 721, 741, 1215
HpyF10VI	GCNNNNNNNGC	6 cut(s)	63, 312, 344, 718, 940, 1030
HpyF3I	CTNAG	1 cut(s)	509
HpySE526I	ACGT	3 cut(s)	61, 172, 178
Hsp92II	CATG	4 cut(s)	353, 418, 771, 1088
KpnI	GGTACC	1 cut(s)	253
Ksp22I	TGATCA	2 cut(s)	598, 856
Kzo9I	GATC	6 cut(s)	289, 352, 505, 598, 804, 856
LguI	GCTCTTC	1 cut(s)	324
LmnI	GCTCC	2 cut(s)	468, 1052
Lsp1109I	GCAGC	4 cut(s)	325, 346, 605, 1305
LweI	GCATC	1 cut(s)	215
MaeI	CTAG	7 cut(s)	21, 228, 356, 728, 900, 1044, 1290
MaeII	ACGT	3 cut(s)	61, 172, 178
MaeIII	GTNAC	4 cut(s)	241, 493, 917, 1202
MalI	GATC	6 cut(s)	291, 354, 507, 600, 806, 858
MboI	GATC	6 cut(s)	289, 352, 505, 598, 804, 856
MboII	GAAGA	8 cut(s)	142, 338, 341, 486, 630, 854, 1049, 1262
MfeI	CAATTG	1 cut(s)	555
MflI	RGATCY	1 cut(s)	804
MhlI	GDGCHC	3 cut(s)	120, 349, 545
MlyI	GAGTC	3 cut(s)	144, 374, 1210
MnlI	CCTC	9 cut(s)	240, 421, 470, 473, 784, 788, 1044, 1060, 1222
MroXI	GAANNNNTTC	2 cut(s)	270, 531
MseI	TTAA	4 cut(s)	392, 834, 1310, 1319
MslI	CAYNNNNRTG	2 cut(s)	274, 519
MspA1I	CMGCKG	2 cut(s)	596, 1296
MspR9I	CCNGG	1 cut(s)	255
MunI	CAATTG	1 cut(s)	555
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	255
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	6 cut(s)	63, 312, 344, 718, 940, 1030
NdeI	CATATG	1 cut(s)	1029
NdeII	GATC	6 cut(s)	289, 352, 505, 598, 804, 856
NlaIII	CATG	4 cut(s)	353, 418, 771, 1088
NlaIV	GGNNCC	2 cut(s)	251, 1164
NmuCI	GTSAC	2 cut(s)	493, 1202
NspV	TTCGAA	2 cut(s)	472, 1302
PciSI	GCTCTTC	1 cut(s)	324
PctI	GAATGC	1 cut(s)	22
PdmI	GAANNNNTTC	2 cut(s)	270, 531
PfeI	GAWTC	2 cut(s)	133, 819
PkrI	GCNGC	4 cut(s)	340, 361, 595, 1295
PleI	GAGTC	3 cut(s)	144, 374, 1209
PpsI	GAGTC	3 cut(s)	144, 374, 1209
Psp6I	CCWGG	1 cut(s)	253
PspEI	GGTNACC	1 cut(s)	917
PspFI	CCCAGC	1 cut(s)	1020
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	2 cut(s)	251, 1164
PstI	CTGCAG	1 cut(s)	595
PsuI	RGATCY	1 cut(s)	804
PvuII	CAGCTG	2 cut(s)	596, 1296
RsaI	GTAC	2 cut(s)	251, 830
RsaNI	GTAC	2 cut(s)	250, 829
RseI	CAYNNNNRTG	2 cut(s)	274, 519
SapI	GCTCTTC	1 cut(s)	324
SaqAI	TTAA	4 cut(s)	392, 834, 1310, 1319
SatI	GCNGC	4 cut(s)	339, 360, 594, 1294
Sau3AI	GATC	6 cut(s)	289, 352, 505, 598, 804, 856
ScaI	AGTACT	1 cut(s)	830
SchI	GAGTC	3 cut(s)	144, 374, 1210
ScrFI	CCNGG	1 cut(s)	255
SduI	GDGCHC	3 cut(s)	120, 349, 545
SfaNI	GCATC	1 cut(s)	215
SfcI	CTRYAG	1 cut(s)	591
SfuI	TTCGAA	2 cut(s)	472, 1302
SmiMI	CAYNNNNRTG	2 cut(s)	274, 519
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
SsiI	CCGC	6 cut(s)	44, 182, 237, 315, 484, 824
SspI	AATATT	3 cut(s)	550, 813, 1099
SspMI	CTAG	7 cut(s)	21, 228, 356, 728, 900, 1044, 1290
StyD4I	CCNGG	1 cut(s)	253
StyI	CCWWGG	1 cut(s)	7
TaaI	ACNGT	5 cut(s)	718, 1010, 1208, 1225, 1325
TaiI	ACGT	3 cut(s)	64, 175, 181
TaqI	TCGA	6 cut(s)	120, 322, 472, 525, 906, 1302
TatI	WGTACW	1 cut(s)	828
TfiI	GAWTC	2 cut(s)	133, 819
Tru1I	TTAA	4 cut(s)	392, 834, 1310, 1319
Tru9I	TTAA	4 cut(s)	392, 834, 1310, 1319
TscAI	CASTG	5 cut(s)	498, 723, 1015, 1159, 1211
TseFI	GTSAC	2 cut(s)	493, 1202
TseI	GCWGC	4 cut(s)	338, 359, 593, 1293
Tsp45I	GTSAC	2 cut(s)	493, 1202
TspDTI	ATGAA	6 cut(s)	17, 431, 568, 986, 1101, 1275
TspRI	CASTG	5 cut(s)	498, 723, 1015, 1159, 1211
XapI	RAATTY	3 cut(s)	851, 1145, 1240
XmnI	GAANNNNTTC	2 cut(s)	270, 531
XspI	CTAG	7 cut(s)	21, 228, 356, 728, 900, 1044, 1290
ZrmI	AGTACT	1 cut(s)	830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.