Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002546

Physical Location & Seq

Genomic Coordinates Reverse (-)

26618551 .. 26620784

Gene Structure 2234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG272800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTCGATGAACAGAGATATCTTCCGTTTCCATTCTTCCGAGTCCATGGACAGCAATTTAAACTTGCAGCCTGATAACCCATTTCAACTTCCAAGTTCCATAAGAGATGCGCCAAATGACTGTAATTTTACTGTTGCTAACTATCCAGTTCCATCACCATTGCCTTTGGGAGGTTATGAGGGTTTTATAACTGGGGCAAACAACAGCACTTCTGGAGGGAACCAAACTAGCCACAATTTACTCAACAAAGAGACCAGTGCTAGTGGAAGTGGAAAATATTCTGCGGCTACCAAACATAGACGATCCCAAAGAAAAGGCAAATCATTTGGTAACGGTAGCTCCATGTATCGAGGTGTTACAAAGTACGAAAATGGACGATGTGAAGCATTTATATGGGATAACACGGATCCAGAAGAGAAATCCAAGACAAGTGGATTTGAAGTAGAAGAGGATGCAGCTAGAGCTCATGACCTAGCTGCTCTAAAATTATGGGGAGAGTCTGCGAGTTTGAATTTTCCGTTAAGCAACTACGTGAATGACCTGGAAGAAATGAAGTCATTTACGAAGAAGGAATACTTTCTACACATCAGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

198

Amino Acids

22.07

Weight (kDa)

6.52

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23031
malus_domestica	MD17G1047700.v1.1
prunus_persica	Prupe.7G069100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480851 RchiOBHm_Chr3g0480891
rosa_laevigata	RLG00000023444 RLG00000023445 RLG00000023447 RLG00000034573
rosa_multiflora	Rmu_sc0004058.1_g000024 Rmu_sc0004838.1_g000011 Rmu_sc0006028.1_g000028 Rmu_sc0012984.1_g000002 Rmu_sc0012984.1_g000013
rosa_roxburghii	Rroxscaffold_1G00032960 Rroxscaffold_6G00400920 Rroxscaffold_6G00400960
rosa_rugosa	Rorug03G0186900 Rorug03G0187000 Rorug03G0187000 Rorug03G0187200 Rorug03G0187300 Rorug05G0241400
rosa_samantha	Rh3AG238500 Rh3AG238600 Rh3BG272000 Rh3BG272500 Rh3BG272700 Rh3BG272800 Rh3CG267800 Rh3CG268300 Rh3DG264100 Rh3DG264400 Rh5AG321600 Rh5BG331900 Rh5CG357200 Rh5DG343700
rosa_wichuraiana	Rw0G006160 Rw3G021350 Rw3G021360 Rw5G030350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	188
AciI	CCGC	1 cut(s)	284
AclWI	GGATC	3 cut(s)	297, 401, 414
AcsI	RAATTY	1 cut(s)	511
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	1 cut(s)	170
AgsI	TTSAA	3 cut(s)	86, 440, 511
AjnI	CCWGG	1 cut(s)	540
AluBI	AGCT	4 cut(s)	339, 458, 464, 476
AluI	AGCT	4 cut(s)	339, 458, 464, 476
Alw21I	GWGCWC	1 cut(s)	466
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	3 cut(s)	297, 401, 414
ApeKI	GCWGC	3 cut(s)	67, 455, 476
ApoI	RAATTY	1 cut(s)	511
Asp700I	GAANNNNTTC	2 cut(s)	277, 576
AspLEI	GCGC	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	147
BamHI	GGATCC	1 cut(s)	406
BanII	GRGCYC	1 cut(s)	466
BarI	GAAGNNNNNNTAC	2 cut(s)	557, 589
Bbv12I	GWGCWC	1 cut(s)	466
BbvI	GCAGC	3 cut(s)	79, 463, 467
BccI	CCATC	1 cut(s)	160
BciT130I	CCWGG	1 cut(s)	542
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	4 cut(s)	228, 261, 459, 473
BisI	GCNGC	4 cut(s)	68, 285, 456, 477
BlsI	GCNGC	4 cut(s)	69, 286, 457, 478
Bme1390I	CCNGG	1 cut(s)	542
BmiI	GGNNCC	2 cut(s)	221, 408
BmrFI	CCNGG	1 cut(s)	542
BmrI	ACTGGG	1 cut(s)	201
BmsI	GCATC	2 cut(s)	97, 442
BmuI	ACTGGG	1 cut(s)	201
BpmI	CTGGAG	1 cut(s)	234
BsaAI	YACGTR	1 cut(s)	532
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	45
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse1I	ACTGG	3 cut(s)	146, 196, 255
Bse3DI	GCAATG	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	542
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMI	GCAATG	1 cut(s)	158
BseNI	ACTGG	3 cut(s)	146, 196, 255
BseXI	GCAGC	3 cut(s)	79, 463, 467
BsiHKAI	GWGCWC	1 cut(s)	466
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	1 cut(s)	245
Bso31I	GGTCTC	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	466
Bsp143I	GATC	2 cut(s)	302, 406
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	1 cut(s)	284
BspHI	TCATGA	1 cut(s)	466
BspLI	GGNNCC	2 cut(s)	221, 408
BspPI	GGATC	3 cut(s)	297, 401, 414
BspTNI	GGTCTC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	158
BsrI	ACTGG	3 cut(s)	146, 196, 255
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	2 cut(s)	302, 406
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	542
Bst4CI	ACNGT	3 cut(s)	122, 133, 335
Bst6I	CTCTTC	2 cut(s)	408, 441
BstBAI	YACGTR	1 cut(s)	532
BstDSI	CCRYGG	1 cut(s)	45
BstENI	CCTNNNNNAGG	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	457
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	2 cut(s)	305, 409
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	2 cut(s)	302, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNI	CCWGG	1 cut(s)	542
BstSCI	CCNGG	1 cut(s)	540
BstV1I	GCAGC	3 cut(s)	79, 463, 467
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	457
BtsIMutI	CAGTG	1 cut(s)	262
CciI	TCATGA	1 cut(s)	466
CfoI	GCGC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	364
CspCI	CAANNNNNGTGG	2 cut(s)	412, 447
CviAII	CATG	3 cut(s)	46, 343, 467
CviJI	RGCY	7 cut(s)	70, 231, 287, 339, 458, 464, 476
CviKI_1	RGCY	7 cut(s)	70, 231, 287, 339, 458, 464, 476
CviQI	GTAC	1 cut(s)	364
DpnI	GATC	2 cut(s)	304, 408
DpnII	GATC	2 cut(s)	302, 406
DraI	TTTAAA	1 cut(s)	60
Eam1104I	CTCTTC	2 cut(s)	408, 441
EarI	CTCTTC	2 cut(s)	408, 441
Ecl136II	GAGCTC	1 cut(s)	464
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	466
Eco31I	GGTCTC	1 cut(s)	245
Eco32I	GATATC	1 cut(s)	19
Eco53kI	GAGCTC	1 cut(s)	464
EcoICRI	GAGCTC	1 cut(s)	464
EcoNI	CCTNNNNNAGG	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	540
EcoRV	GATATC	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	466
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	3 cut(s)	49, 346, 470
FalI	AAGNNNNNCTT	2 cut(s)	560, 592
FatI	CATG	3 cut(s)	45, 342, 466
Fnu4HI	GCNGC	4 cut(s)	68, 285, 456, 477
FokI	GGATG	1 cut(s)	464
FriOI	GRGCYC	1 cut(s)	466
Fsp4HI	GCNGC	4 cut(s)	68, 285, 456, 477
FspBI	CTAG	4 cut(s)	228, 261, 459, 473
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	4 cut(s)	68, 285, 456, 477
GsuI	CTGGAG	1 cut(s)	234
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	3 cut(s)	49, 346, 470
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	2 cut(s)	41, 497
HphI	GGTGA	1 cut(s)	147
Hpy188I	TCNGA	2 cut(s)	40, 590
Hpy188III	TCNNGA	3 cut(s)	213, 410, 467
HpyAV	CCTTC	2 cut(s)	562, 585
HpyCH4III	ACNGT	3 cut(s)	122, 133, 335
HpyCH4IV	ACGT	1 cut(s)	531
HpyCH4V	TGCA	2 cut(s)	67, 455
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpySE526I	ACGT	1 cut(s)	531
Hsp92II	CATG	3 cut(s)	49, 346, 470
HspAI	GCGC	1 cut(s)	110
Kzo9I	GATC	2 cut(s)	302, 406
LmnI	GCTCC	1 cut(s)	344
LpnPI	CCDG	8 cut(s)	84, 159, 177, 198, 268, 423, 527, 554
Lsp1109I	GCAGC	3 cut(s)	79, 463, 467
LweI	GCATC	2 cut(s)	97, 442
MaeI	CTAG	4 cut(s)	228, 261, 459, 473
MaeII	ACGT	1 cut(s)	531
MaeIII	GTNAC	2 cut(s)	329, 355
MalI	GATC	2 cut(s)	304, 408
MboI	GATC	2 cut(s)	302, 406
MboII	GAAGA	6 cut(s)	13, 27, 425, 458, 557, 577
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	1 cut(s)	466
MluCI	AATT	5 cut(s)	55, 124, 235, 485, 511
MlyI	GAGTC	2 cut(s)	50, 506
MnlI	CCTC	5 cut(s)	164, 172, 209, 344, 442
MroXI	GAANNNNTTC	2 cut(s)	277, 576
MseI	TTAA	2 cut(s)	59, 521
MslI	CAYNNNNRTG	1 cut(s)	391
MspR9I	CCNGG	1 cut(s)	542
MvaI	CCWGG	1 cut(s)	542
MwoI	GCNNNNNNNGC	1 cut(s)	461
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	2 cut(s)	302, 406
NlaIII	CATG	3 cut(s)	49, 346, 470
NlaIV	GGNNCC	2 cut(s)	221, 408
PagI	TCATGA	1 cut(s)	466
PdmI	GAANNNNTTC	2 cut(s)	277, 576
PkrI	GCNGC	4 cut(s)	69, 286, 457, 478
PleI	GAGTC	2 cut(s)	49, 505
PpsI	GAGTC	2 cut(s)	49, 505
Ppu21I	YACGTR	1 cut(s)	532
PsiI	TTATAA	1 cut(s)	188
Psp124BI	GAGCTC	1 cut(s)	466
Psp6I	CCWGG	1 cut(s)	540
PspGI	CCWGG	1 cut(s)	540
PspN4I	GGNNCC	2 cut(s)	221, 408
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
RseI	CAYNNNNRTG	1 cut(s)	391
SacI	GAGCTC	1 cut(s)	466
SaqAI	TTAA	2 cut(s)	59, 521
SatI	GCNGC	4 cut(s)	68, 285, 456, 477
Sau3AI	GATC	2 cut(s)	302, 406
SchI	GAGTC	2 cut(s)	50, 506
ScrFI	CCNGG	1 cut(s)	542
SduI	GDGCHC	1 cut(s)	466
SfaNI	GCATC	2 cut(s)	97, 442
SmiMI	CAYNNNNRTG	1 cut(s)	391
Sse9I	AATT	5 cut(s)	55, 124, 235, 485, 511
SsiI	CCGC	1 cut(s)	284
SspI	AATATT	1 cut(s)	278
SspMI	CTAG	4 cut(s)	228, 261, 459, 473
SstI	GAGCTC	1 cut(s)	466
StyD4I	CCNGG	1 cut(s)	540
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	3 cut(s)	122, 133, 335
TaiI	ACGT	1 cut(s)	534
TaqI	TCGA	2 cut(s)	5, 349
TasI	AATT	5 cut(s)	55, 124, 235, 485, 511
TauI	GCSGC	1 cut(s)	287
Tru1I	TTAA	2 cut(s)	59, 521
Tru9I	TTAA	2 cut(s)	59, 521
TscAI	CASTG	1 cut(s)	262
TseI	GCWGC	3 cut(s)	67, 455, 476
TspDTI	ATGAA	2 cut(s)	23, 566
TspGWI	ACGGA	3 cut(s)	14, 419, 507
TspRI	CASTG	1 cut(s)	262
XagI	CCTNNNNNAGG	1 cut(s)	168
XapI	RAATTY	1 cut(s)	511
XmnI	GAANNNNTTC	2 cut(s)	277, 576
XspI	CTAG	4 cut(s)	228, 261, 459, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.