Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002546

Physical Location & Seq

Genomic Coordinates Reverse (-)

26603246 .. 26604088

Gene Structure 843 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG272500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGAACAAACAATTTCGATTTGTCTTATTTTCAATAATTTTTCCTCCGTTTAATTATTCTAATATTGAATCAGATACGGAAGAGCAAGCCGCCGAAGCATATGACGTTGCAGCTATAAGGGTGAAAGGGCCGAAAGCAATCACCAATTTTGATAAAAGTAACTATGATATCAAACAGATTCTTGAAGGCCCAAAATTTCTAATTGAAAAAGGTGCATCGAAGACATTGAAGCGGAGTTCAGTTGACGATGTGCTTCAAAAGAGAAGAAAGACTCGCAGTGTCTCCAGCTCAACCCCTAGTGCCCCACCATCACTTCACCCAATAGATCAAACTAAACTAACGGCAATCGATTCAACCCTTCAGTATCAATTTCAGATCCCTTCCCTCCAAGTTCCTGTCCCTCACGGTTACCAAAACCCTACCTTTGAAGCAAACCGAAGTTTCAGTCCTCACTATGACTATGGTGGAAGTGAGCCAACAACCCAGTTTCAACCTATCATACCCGTATTGAATCAAGAGTTTCCATCTCACCAGTACTATAACGGTAATTCCCAGCACCACCTTGATCAAACCCCTAGCTCCCAGTTCCTTCAAGACACTCAGAACCCTAATCTTGTTGCTGGGTTGAACAACCTTGCAAGTGATAACTGTATGGAAGACTTTTCCAGCAGTCAGGTTCATGAGGCGAGTTTCGAGATGATGGGGACGAACGAGGGTGGTGTTCATGGTGATGGAAATCTTGTTGATCCTGTGTTTGGGCTGGGCAATTCTGACTTGGATTCTGCGAGTTGGCTGGAAACGTTCTTGAGGATGAGCCCACAACGTCCTGATTCTAAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010449 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0035266 GO:0040007 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098727 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

280

Amino Acids

31.24

Weight (kDa)

5.22

Isoelectric Point (pI)

59.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23031
malus_domestica	MD17G1047700.v1.1
prunus_persica	Prupe.7G069100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480851 RchiOBHm_Chr3g0480891
rosa_laevigata	RLG00000023444 RLG00000023445 RLG00000023447 RLG00000034573
rosa_multiflora	Rmu_sc0004058.1_g000024 Rmu_sc0004838.1_g000011 Rmu_sc0006028.1_g000028 Rmu_sc0012984.1_g000002 Rmu_sc0012984.1_g000013
rosa_roxburghii	Rroxscaffold_1G00032960 Rroxscaffold_6G00400920 Rroxscaffold_6G00400960
rosa_rugosa	Rorug03G0186900 Rorug03G0187000 Rorug03G0187000 Rorug03G0187200 Rorug03G0187300 Rorug05G0241400
rosa_samantha	Rh3AG238500 Rh3AG238600 Rh3BG272000 Rh3BG272500 Rh3BG272700 Rh3BG272800 Rh3CG267800 Rh3CG268300 Rh3DG264100 Rh3DG264400 Rh5AG321600 Rh5BG331900 Rh5CG357200 Rh5DG343700
rosa_wichuraiana	Rw0G006160 Rw3G021350 Rw3G021360 Rw5G030350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	90, 232
AclI	AACGTT	1 cut(s)	800
AclWI	GGATC	2 cut(s)	370, 740
AcsI	RAATTY	1 cut(s)	194
AcuI	CTGAAG	1 cut(s)	344
AfaI	GTAC	1 cut(s)	536
AfiI	CCNNNNNNNGG	1 cut(s)	755
AluBI	AGCT	3 cut(s)	113, 288, 579
AluI	AGCT	3 cut(s)	113, 288, 579
Alw26I	GTCTC	1 cut(s)	286
AlwI	GGATC	2 cut(s)	370, 740
AoxI	GGCC	2 cut(s)	128, 187
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	194
ArsI	GACNNNNNNTTYG	2 cut(s)	430, 462
AspS9I	GGNCC	2 cut(s)	128, 188
AsuHPI	GGTGA	5 cut(s)	133, 133, 308, 521, 740
BaeGI	GKGCMC	1 cut(s)	304
BanII	GRGCYC	1 cut(s)	818
BbsI	GAAGAC	2 cut(s)	227, 663
BbvI	GCAGC	1 cut(s)	122
BccI	CCATC	4 cut(s)	316, 532, 694, 725
BceAI	ACGGC	1 cut(s)	357
BclI	TGATCA	1 cut(s)	565
BcoDI	GTCTC	1 cut(s)	286
BfaI	CTAG	2 cut(s)	297, 576
BisI	GCNGC	2 cut(s)	90, 111
BlsI	GCNGC	2 cut(s)	91, 112
BmcAI	AGTACT	1 cut(s)	536
BmgT120I	GGNCC	2 cut(s)	128, 188
BmrI	ACTGGG	2 cut(s)	478, 577
BmsI	GCATC	1 cut(s)	224
BmuI	ACTGGG	2 cut(s)	478, 577
BpiI	GAAGAC	2 cut(s)	227, 663
BpmI	CTGGAG	1 cut(s)	268
BpuEI	CTTGAG	1 cut(s)	826
Bsa29I	ATCGAT	1 cut(s)	348
BsaBI	GATNNNNATC	1 cut(s)	735
Bsc4I	CCNNNNNNNGG	1 cut(s)	755
Bse1I	ACTGG	3 cut(s)	484, 532, 583
Bse8I	GATNNNNATC	1 cut(s)	735
BseCI	ATCGAT	1 cut(s)	348
BseGI	GGATG	1 cut(s)	816
BseJI	GATNNNNATC	1 cut(s)	735
BseLI	CCNNNNNNNGG	1 cut(s)	755
BseMII	CTCAG	1 cut(s)	614
BseNI	ACTGG	3 cut(s)	484, 532, 583
BseSI	GKGCMC	1 cut(s)	304
BseXI	GCAGC	1 cut(s)	122
BseYI	CCCAGC	3 cut(s)	552, 620, 760
BshFI	GGCC	2 cut(s)	130, 189
BshVI	ATCGAT	1 cut(s)	348
BslFI	GGGAC	2 cut(s)	383, 718
BslI	CCNNNNNNNGG	1 cut(s)	755
BsmAI	GTCTC	1 cut(s)	286
BsmFI	GGGAC	2 cut(s)	383, 718
BsnI	GGCC	2 cut(s)	130, 189
Bsp1286I	GDGCHC	2 cut(s)	304, 818
Bsp143I	GATC	4 cut(s)	325, 375, 565, 745
BspACI	CCGC	2 cut(s)	90, 232
BspANI	GGCC	2 cut(s)	130, 189
BspCNI	CTCAG	1 cut(s)	613
BspDI	ATCGAT	1 cut(s)	348
BspHI	TCATGA	1 cut(s)	679
BspPI	GGATC	2 cut(s)	370, 740
BspQI	GCTCTTC	1 cut(s)	75
BsrI	ACTGG	3 cut(s)	484, 532, 583
BssMI	GATC	4 cut(s)	325, 375, 565, 745
Bst4CI	ACNGT	3 cut(s)	407, 545, 650
Bst6I	CTCTTC	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	600, 834
BstEII	GGTNACC	1 cut(s)	407
BstF5I	GGATG	1 cut(s)	816
BstKTI	GATC	4 cut(s)	328, 378, 568, 748
BstMAI	GTCTC	1 cut(s)	286
BstMBI	GATC	4 cut(s)	325, 375, 565, 745
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstPI	GGTNACC	1 cut(s)	407
BstSLI	GKGCMC	1 cut(s)	304
BstV1I	GCAGC	1 cut(s)	122
BstV2I	GAAGAC	2 cut(s)	227, 663
BstX2I	RGATCY	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	375
Bsu15I	ATCGAT	1 cut(s)	348
BsuRI	GGCC	2 cut(s)	130, 189
BsuTUI	ATCGAT	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	816
BtsI	GCAGTG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	283
Cac8I	GCNNGC	1 cut(s)	87
CciI	TCATGA	1 cut(s)	679
Cfr13I	GGNCC	2 cut(s)	128, 188
ClaI	ATCGAT	1 cut(s)	348
Csp6I	GTAC	1 cut(s)	535
CviAII	CATG	2 cut(s)	680, 725
CviQI	GTAC	1 cut(s)	535
DdeI	CTNAG	2 cut(s)	600, 834
DpnI	GATC	4 cut(s)	327, 377, 567, 747
DpnII	GATC	4 cut(s)	325, 375, 565, 745
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	818
Eco32I	GATATC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	344
Eco91I	GGTNACC	1 cut(s)	407
EcoO65I	GGTNACC	1 cut(s)	407
EcoRV	GATATC	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	818
FaeI	CATG	2 cut(s)	683, 728
FaqI	GGGAC	2 cut(s)	383, 718
FatI	CATG	2 cut(s)	679, 724
FauNDI	CATATG	1 cut(s)	100
FbaI	TGATCA	1 cut(s)	565
Fnu4HI	GCNGC	2 cut(s)	90, 111
FokI	GGATG	1 cut(s)	823
FriOI	GRGCYC	1 cut(s)	818
Fsp4HI	GCNGC	2 cut(s)	90, 111
FspBI	CTAG	2 cut(s)	297, 576
GluI	GCNGC	2 cut(s)	90, 111
GsaI	CCCAGC	3 cut(s)	556, 624, 764
GsuI	CTGGAG	1 cut(s)	268
HaeIII	GGCC	2 cut(s)	130, 189
Hin1II	CATG	2 cut(s)	683, 728
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	7 cut(s)	68, 178, 271, 350, 511, 779, 830
HphI	GGTGA	5 cut(s)	133, 133, 308, 521, 740
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	4 cut(s)	73, 375, 603, 772
Hpy188III	TCNNGA	7 cut(s)	182, 515, 593, 680, 694, 805, 827
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	4 cut(s)	179, 368, 390, 599
HpyCH4III	ACNGT	3 cut(s)	407, 545, 650
HpyCH4IV	ACGT	3 cut(s)	105, 800, 823
HpyCH4V	TGCA	3 cut(s)	110, 215, 638
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	2 cut(s)	600, 834
HpySE526I	ACGT	3 cut(s)	105, 800, 823
Hsp92II	CATG	2 cut(s)	683, 728
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	4 cut(s)	325, 375, 565, 745
LguI	GCTCTTC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	584
Lsp1109I	GCAGC	1 cut(s)	122
LweI	GCATC	1 cut(s)	224
MaeI	CTAG	2 cut(s)	297, 576
MaeII	ACGT	3 cut(s)	105, 800, 823
MaeIII	GTNAC	2 cut(s)	158, 407
MalI	GATC	4 cut(s)	327, 377, 567, 747
MboI	GATC	4 cut(s)	325, 375, 565, 745
MboII	GAAGA	4 cut(s)	92, 232, 276, 668
MflI	RGATCY	1 cut(s)	375
MhlI	GDGCHC	2 cut(s)	304, 818
MluCI	AATT	9 cut(s)	11, 36, 52, 145, 194, 201, 368, 547, 766
MlyI	GAGTC	1 cut(s)	265
MnlI	CCTC	7 cut(s)	54, 395, 411, 459, 676, 706, 801
MseI	TTAA	1 cut(s)	51
MslI	CAYNNNNRTG	1 cut(s)	729
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeI	CATATG	1 cut(s)	100
NdeII	GATC	4 cut(s)	325, 375, 565, 745
NlaIII	CATG	2 cut(s)	683, 728
PagI	TCATGA	1 cut(s)	679
PciSI	GCTCTTC	1 cut(s)	75
PfeI	GAWTC	6 cut(s)	68, 178, 350, 511, 779, 830
PkrI	GCNGC	2 cut(s)	91, 112
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
Psp1406I	AACGTT	1 cut(s)	800
PspEI	GGTNACC	1 cut(s)	407
PspFI	CCCAGC	3 cut(s)	552, 620, 760
PspPI	GGNCC	2 cut(s)	128, 188
PsuI	RGATCY	1 cut(s)	375
RsaI	GTAC	1 cut(s)	536
RsaNI	GTAC	1 cut(s)	535
RseI	CAYNNNNRTG	1 cut(s)	729
SapI	GCTCTTC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	2 cut(s)	90, 111
Sau3AI	GATC	4 cut(s)	325, 375, 565, 745
Sau96I	GGNCC	2 cut(s)	128, 188
ScaI	AGTACT	1 cut(s)	536
SchI	GAGTC	1 cut(s)	265
SduI	GDGCHC	2 cut(s)	304, 818
SfaNI	GCATC	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	729
SmlI	CTYRAG	1 cut(s)	805
SmoI	CTYRAG	1 cut(s)	805
Sse9I	AATT	9 cut(s)	11, 36, 52, 145, 194, 201, 368, 547, 766
SsiI	CCGC	2 cut(s)	90, 232
SspI	AATATT	1 cut(s)	64
SspMI	CTAG	2 cut(s)	297, 576
TaaI	ACNGT	3 cut(s)	407, 545, 650
TaiI	ACGT	3 cut(s)	108, 803, 826
TaqI	TCGA	4 cut(s)	16, 218, 348, 693
TasI	AATT	9 cut(s)	11, 36, 52, 145, 194, 201, 368, 547, 766
TatI	WGTACW	1 cut(s)	534
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	6 cut(s)	68, 178, 350, 511, 779, 830
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	1 cut(s)	283
TseI	GCWGC	1 cut(s)	110
TspDTI	ATGAA	3 cut(s)	17, 668, 713
TspGWI	ACGGA	2 cut(s)	36, 92
TspRI	CASTG	1 cut(s)	283
XapI	RAATTY	1 cut(s)	194
XspI	CTAG	2 cut(s)	297, 576
ZrmI	AGTACT	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.