Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002546

Physical Location & Seq

Genomic Coordinates Forward (+)

23845717 .. 23848555

Gene Structure 2839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023444

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGTCGATGAACAGAGATAGCTTCTGTTTCCATTCTTCCGAGTCCATGGACAGCAATTTATACTTGCAGCCTGAAAACCCATTTCAACTTCCAAGTTCCATAAGAGATGCGCCAAATGACTGTAATTTTACTGTTGCTAACTATCCAGTTCCACCACCATTGCCTTTGGGAGGTTATGGGGGTTTTATAACTGGGGCAAACAACAGCACTTATGGAGGGAAACAAACTATCCACAATTTACTCAACAACGAGACCAGTGCTAGTGGAAGTGGAACAAATTCTGCGACTACCAAACATAGACGATCCCAAAGAAAAGGCAAATCATTTGGTAACAGTAGCTCCATGTATCGAGGTGTTACAAAATACGAAAATGGACGATGTGAAGCATTTATATGGGATAACACGGATCCAGAAGAGAAATCCAAGACAAGTGGATTTGAAGTAGAAGAAGATGCAGCTAGAGCTCATGACCTAGCTGCTCTAAAGTTATGGGGAGAGTCTGCGAGTTTGAATTTTCCGTTAAGCAACTACGTGAATGACCTGGAAGAAATGAAGTCATTTACGAAGAAGGAATACTTTCTACACATCAGAAGGAACGCGCACAACAAAAAATGGCAAGTTAGGTTAGGAAAAGGAAAAGATATTGATAGCATTTACGTTGGAACATTTGATACCGAAAAGCAAGCCGCCGAAGCATATGACGTTGCAGCTATAAGGGTGAAAGGGCCGAAAGCAATCACCAATTTTGATAAAAGTAACTACGATGTCAAACAGATTCTTGAAAGCCCAAAATTTCTAATTGATAAAGGTGCATCGAAGACGTTGAAGCGAAGTTCAGTTGATGATGTGCTTCAAAAGAGAAGAAAGACTCGCAGTGACTCCAGCTCAACCCCTAGTGCCCCACCATCACTTCACCCAATAAATCAAACTCAACCAACGGTAATCGATTCAAGCCTTCAATATCAATTTCCGATCCCTTACCTCCAAGTTCCAGTCCCTCACGGTTACCAAAACCCTATCTTTGAAGCAAACCGAAGTTTCAGTCCTCAGTATGACTATGGTGGAAGTGAGCCAATAGCCCAGCTTCAACCTATCATACCCTTATTGAATCAAGAGTTTCCATCTCATCAGTATTGTAACAGCATTAATTCCCAGCACCACCTTGATCAAACCCCTAGCTCCCAGTTACTTCAAGACACTCAGAACCCTAATCTTGTTGCTAGGTTGAACAACCTTGCAAGTGATAACTGTATGGAAGAATTTTCCAGCAGTCAGGTTCATGAGGCGAGTTTCGAGATGATGGGGACGAACGAGGGCGGCGTTCATGGTGATGGAAATCTTGGTGATCCTGTGTTTGGGCTGGGCAATTCTGACTTGGATCCTGCGAGCTGGCTAGAAACGTTCTTGAGGATGAGCCCACAACGTCCTGATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010449 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0035266 GO:0040007 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098727 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

479

Amino Acids

53.16

Weight (kDa)

5.84

Isoelectric Point (pI)

53.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23031
malus_domestica	MD17G1047700.v1.1
prunus_persica	Prupe.7G069100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480851 RchiOBHm_Chr3g0480891
rosa_laevigata	RLG00000023444 RLG00000023445 RLG00000023447 RLG00000034573
rosa_multiflora	Rmu_sc0004058.1_g000024 Rmu_sc0004838.1_g000011 Rmu_sc0006028.1_g000028 Rmu_sc0012984.1_g000002 Rmu_sc0012984.1_g000013
rosa_roxburghii	Rroxscaffold_1G00032960 Rroxscaffold_6G00400920 Rroxscaffold_6G00400960
rosa_rugosa	Rorug03G0186900 Rorug03G0187000 Rorug03G0187000 Rorug03G0187200 Rorug03G0187300 Rorug05G0241400
rosa_samantha	Rh3AG238500 Rh3AG238600 Rh3BG272000 Rh3BG272500 Rh3BG272700 Rh3BG272800 Rh3CG267800 Rh3CG268300 Rh3DG264100 Rh3DG264400 Rh5AG321600 Rh5BG331900 Rh5CG357200 Rh5DG343700
rosa_wichuraiana	Rw0G006160 Rw3G021350 Rw3G021360 Rw5G030350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	188
AccII	CGCG	1 cut(s)	599
AciI	CCGC	2 cut(s)	687, 1317
AclI	AACGTT	1 cut(s)	1400
AclWI	GGATC	7 cut(s)	297, 401, 414, 967, 1340, 1373, 1386
AcsI	RAATTY	4 cut(s)	277, 511, 791, 1259
AfiI	CCNNNNNNNGG	2 cut(s)	170, 1355
AjnI	CCWGG	1 cut(s)	540
Alw21I	GWGCWC	1 cut(s)	466
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	7 cut(s)	297, 401, 414, 967, 1340, 1373, 1386
AoxI	GGCC	1 cut(s)	725
ApeKI	GCWGC	4 cut(s)	67, 455, 476, 707
ApoI	RAATTY	4 cut(s)	277, 511, 791, 1259
ArsI	GACNNNNNNTTYG	2 cut(s)	1027, 1059
AseI	ATTAAT	1 cut(s)	1146
Asp700I	GAANNNNTTC	2 cut(s)	277, 576
AspLEI	GCGC	2 cut(s)	112, 601
AspS9I	GGNCC	1 cut(s)	725
AsuHPI	GGTGA	5 cut(s)	730, 730, 905, 1340, 1355
BaeGI	GKGCMC	1 cut(s)	901
BamHI	GGATCC	2 cut(s)	406, 1378
BanII	GRGCYC	2 cut(s)	466, 1418
BarI	GAAGNNNNNNTAC	2 cut(s)	557, 589
BbsI	GAAGAC	1 cut(s)	824
Bbv12I	GWGCWC	1 cut(s)	466
BbvI	GCAGC	4 cut(s)	79, 463, 467, 719
BccI	CCATC	4 cut(s)	913, 1129, 1294, 1325
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BciT130I	CCWGG	1 cut(s)	542
BclI	TGATCA	1 cut(s)	1165
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	7 cut(s)	261, 459, 473, 894, 1176, 1221, 1394
BisI	GCNGC	6 cut(s)	68, 456, 477, 687, 708, 1318
BlsI	GCNGC	6 cut(s)	69, 457, 478, 688, 709, 1319
Bme1390I	CCNGG	1 cut(s)	542
BmgT120I	GGNCC	1 cut(s)	725
BmiI	GGNNCC	2 cut(s)	408, 1380
BmrFI	CCNGG	1 cut(s)	542
BmrI	ACTGGG	2 cut(s)	201, 1177
BmsI	GCATC	3 cut(s)	97, 442, 821
BmuI	ACTGGG	2 cut(s)	201, 1177
BpiI	GAAGAC	1 cut(s)	824
BpmI	CTGGAG	1 cut(s)	865
BpuEI	CTTGAG	1 cut(s)	1426
Bsa29I	ATCGAT	1 cut(s)	945
BsaAI	YACGTR	1 cut(s)	532
BsaBI	GATNNNNATC	1 cut(s)	1335
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	45
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 1355
Bse1I	ACTGG	5 cut(s)	146, 196, 255, 992, 1183
Bse3DI	GCAATG	1 cut(s)	158
Bse8I	GATNNNNATC	1 cut(s)	1335
BseBI	CCWGG	1 cut(s)	542
BseCI	ATCGAT	1 cut(s)	945
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	1 cut(s)	1416
BseJI	GATNNNNATC	1 cut(s)	1335
BseLI	CCNNNNNNNGG	2 cut(s)	170, 1355
BseMI	GCAATG	1 cut(s)	158
BseMII	CTCAG	2 cut(s)	1061, 1214
BseNI	ACTGG	5 cut(s)	146, 196, 255, 992, 1183
BseSI	GKGCMC	1 cut(s)	901
BseXI	GCAGC	4 cut(s)	79, 463, 467, 719
BseYI	CCCAGC	3 cut(s)	1080, 1152, 1360
Bsh1236I	CGCG	1 cut(s)	599
BshFI	GGCC	1 cut(s)	727
BshVI	ATCGAT	1 cut(s)	945
BsiHKAI	GWGCWC	1 cut(s)	466
BslFI	GGGAC	2 cut(s)	980, 1318
BslI	CCNNNNNNNGG	2 cut(s)	170, 1355
BsmAI	GTCTC	1 cut(s)	245
BsmFI	GGGAC	2 cut(s)	980, 1318
BsnI	GGCC	1 cut(s)	727
Bso31I	GGTCTC	1 cut(s)	245
Bsp1286I	GDGCHC	3 cut(s)	466, 901, 1418
Bsp143I	GATC	6 cut(s)	302, 406, 972, 1165, 1345, 1378
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	2 cut(s)	687, 1317
BspANI	GGCC	1 cut(s)	727
BspCNI	CTCAG	2 cut(s)	1060, 1213
BspDI	ATCGAT	1 cut(s)	945
BspFNI	CGCG	1 cut(s)	599
BspHI	TCATGA	2 cut(s)	466, 1279
BspLI	GGNNCC	2 cut(s)	408, 1380
BspPI	GGATC	7 cut(s)	297, 401, 414, 967, 1340, 1373, 1386
BspTNI	GGTCTC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	158
BsrI	ACTGG	5 cut(s)	146, 196, 255, 992, 1183
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	6 cut(s)	302, 406, 972, 1165, 1345, 1378
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	542
Bst4CI	ACNGT	6 cut(s)	122, 133, 335, 940, 1004, 1250
Bst6I	CTCTTC	1 cut(s)	408
BstBAI	YACGTR	1 cut(s)	532
BstC8I	GCNNGC	3 cut(s)	684, 1387, 1391
BstDEI	CTNAG	2 cut(s)	1047, 1200
BstDSI	CCRYGG	1 cut(s)	45
BstEII	GGTNACC	1 cut(s)	1004
BstENI	CCTNNNNNAGG	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	1416
BstFNI	CGCG	1 cut(s)	599
BstHHI	GCGC	2 cut(s)	112, 601
BstKTI	GATC	6 cut(s)	305, 409, 975, 1168, 1348, 1381
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	6 cut(s)	302, 406, 972, 1165, 1345, 1378
BstMWI	GCNNNNNNNGC	2 cut(s)	461, 692
BstNI	CCWGG	1 cut(s)	542
BstPI	GGTNACC	1 cut(s)	1004
BstSCI	CCNGG	1 cut(s)	540
BstSLI	GKGCMC	1 cut(s)	901
BstUI	CGCG	1 cut(s)	599
BstV1I	GCAGC	4 cut(s)	79, 463, 467, 719
BstV2I	GAAGAC	1 cut(s)	824
BstX2I	RGATCY	2 cut(s)	406, 1378
BstYI	RGATCY	2 cut(s)	406, 1378
Bsu15I	ATCGAT	1 cut(s)	945
BsuRI	GGCC	1 cut(s)	727
BsuTUI	ATCGAT	1 cut(s)	945
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	1416
BtsI	GCAGTG	1 cut(s)	880
BtsIMutI	CAGTG	2 cut(s)	262, 880
Cac8I	GCNNGC	3 cut(s)	684, 1387, 1391
CciI	TCATGA	2 cut(s)	466, 1279
CfoI	GCGC	2 cut(s)	112, 601
Cfr13I	GGNCC	1 cut(s)	725
ClaI	ATCGAT	1 cut(s)	945
CspCI	CAANNNNNGTGG	4 cut(s)	141, 176, 412, 447
CviAII	CATG	5 cut(s)	46, 343, 467, 1280, 1325
DdeI	CTNAG	2 cut(s)	1047, 1200
DpnI	GATC	6 cut(s)	304, 408, 974, 1167, 1347, 1380
DpnII	GATC	6 cut(s)	302, 406, 972, 1165, 1345, 1378
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Ecl136II	GAGCTC	1 cut(s)	464
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	2 cut(s)	466, 1418
Eco31I	GGTCTC	1 cut(s)	245
Eco53kI	GAGCTC	1 cut(s)	464
Eco91I	GGTNACC	1 cut(s)	1004
EcoICRI	GAGCTC	1 cut(s)	464
EcoNI	CCTNNNNNAGG	1 cut(s)	168
EcoO65I	GGTNACC	1 cut(s)	1004
EcoRII	CCWGG	1 cut(s)	540
EcoT14I	CCWWGG	1 cut(s)	45
EcoT38I	GRGCYC	2 cut(s)	466, 1418
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	5 cut(s)	49, 346, 470, 1283, 1328
FalI	AAGNNNNNCTT	2 cut(s)	560, 592
FaqI	GGGAC	2 cut(s)	980, 1318
FatI	CATG	5 cut(s)	45, 342, 466, 1279, 1324
FauNDI	CATATG	1 cut(s)	697
FbaI	TGATCA	1 cut(s)	1165
Fnu4HI	GCNGC	6 cut(s)	68, 456, 477, 687, 708, 1318
FokI	GGATG	1 cut(s)	1423
FriOI	GRGCYC	2 cut(s)	466, 1418
Fsp4HI	GCNGC	6 cut(s)	68, 456, 477, 687, 708, 1318
FspBI	CTAG	7 cut(s)	261, 459, 473, 894, 1176, 1221, 1394
GlaI	GCGC	2 cut(s)	111, 600
GluI	GCNGC	6 cut(s)	68, 456, 477, 687, 708, 1318
GsaI	CCCAGC	3 cut(s)	1084, 1156, 1364
GsuI	CTGGAG	1 cut(s)	865
HaeIII	GGCC	1 cut(s)	727
HhaI	GCGC	2 cut(s)	112, 601
Hin1II	CATG	5 cut(s)	49, 346, 470, 1283, 1328
Hin6I	GCGC	2 cut(s)	110, 599
HinP1I	GCGC	2 cut(s)	110, 599
HinfI	GANTC	8 cut(s)	41, 497, 775, 868, 878, 947, 1108, 1430
HphI	GGTGA	5 cut(s)	730, 730, 905, 1340, 1355
Hpy188I	TCNGA	5 cut(s)	40, 590, 972, 1203, 1372
HpyAV	CCTTC	3 cut(s)	562, 585, 965
HpyCH4III	ACNGT	6 cut(s)	122, 133, 335, 940, 1004, 1250
HpyCH4IV	ACGT	6 cut(s)	531, 657, 702, 821, 1400, 1423
HpyCH4V	TGCA	5 cut(s)	67, 455, 707, 812, 1238
HpyF10VI	GCNNNNNNNGC	2 cut(s)	461, 692
HpyF3I	CTNAG	2 cut(s)	1047, 1200
HpySE526I	ACGT	6 cut(s)	531, 657, 702, 821, 1400, 1423
Hsp92II	CATG	5 cut(s)	49, 346, 470, 1283, 1328
HspAI	GCGC	2 cut(s)	110, 599
Ksp22I	TGATCA	1 cut(s)	1165
Kzo9I	GATC	6 cut(s)	302, 406, 972, 1165, 1345, 1378
LmnI	GCTCC	2 cut(s)	344, 1184
Lsp1109I	GCAGC	4 cut(s)	79, 463, 467, 719
LweI	GCATC	3 cut(s)	97, 442, 821
MaeI	CTAG	7 cut(s)	261, 459, 473, 894, 1176, 1221, 1394
MaeII	ACGT	6 cut(s)	531, 657, 702, 821, 1400, 1423
MaeIII	GTNAC	7 cut(s)	329, 355, 755, 875, 1004, 1136, 1185
MalI	GATC	6 cut(s)	304, 408, 974, 1167, 1347, 1380
MboI	GATC	6 cut(s)	302, 406, 972, 1165, 1345, 1378
MboII	GAAGA	9 cut(s)	27, 425, 458, 461, 557, 577, 829, 873, 1268
MflI	RGATCY	2 cut(s)	406, 1378
MhlI	GDGCHC	3 cut(s)	466, 901, 1418
MlyI	GAGTC	4 cut(s)	50, 506, 862, 872
MmeI	TCCRAC	1 cut(s)	640
MnlI	CCTC	9 cut(s)	164, 209, 344, 992, 1008, 1056, 1276, 1306, 1401
MroXI	GAANNNNTTC	2 cut(s)	277, 576
MseI	TTAA	2 cut(s)	521, 1146
MslI	CAYNNNNRTG	2 cut(s)	391, 1329
MspR9I	CCNGG	1 cut(s)	542
MvaI	CCWGG	1 cut(s)	542
MvnI	CGCG	1 cut(s)	599
MwoI	GCNNNNNNNGC	2 cut(s)	461, 692
NcoI	CCATGG	1 cut(s)	45
NdeI	CATATG	1 cut(s)	697
NdeII	GATC	6 cut(s)	302, 406, 972, 1165, 1345, 1378
NlaIII	CATG	5 cut(s)	49, 346, 470, 1283, 1328
NlaIV	GGNNCC	2 cut(s)	408, 1380
NmuCI	GTSAC	1 cut(s)	875
PagI	TCATGA	2 cut(s)	466, 1279
PcsI	WCGNNNNNNNCGW	1 cut(s)	1317
PdmI	GAANNNNTTC	2 cut(s)	277, 576
PfeI	GAWTC	4 cut(s)	775, 947, 1108, 1430
PkrI	GCNGC	6 cut(s)	69, 457, 478, 688, 709, 1319
PleI	GAGTC	4 cut(s)	49, 505, 862, 872
PpsI	GAGTC	4 cut(s)	49, 505, 862, 872
Ppu21I	YACGTR	1 cut(s)	532
PshBI	ATTAAT	1 cut(s)	1146
PsiI	TTATAA	1 cut(s)	188
Psp124BI	GAGCTC	1 cut(s)	466
Psp1406I	AACGTT	1 cut(s)	1400
Psp6I	CCWGG	1 cut(s)	540
PspEI	GGTNACC	1 cut(s)	1004
PspFI	CCCAGC	3 cut(s)	1080, 1152, 1360
PspGI	CCWGG	1 cut(s)	540
PspN4I	GGNNCC	2 cut(s)	408, 1380
PspPI	GGNCC	1 cut(s)	725
PsrI	GAACNNNNNNTAC	2 cut(s)	655, 687
PsuI	RGATCY	2 cut(s)	406, 1378
RseI	CAYNNNNRTG	2 cut(s)	391, 1329
SacI	GAGCTC	1 cut(s)	466
SaqAI	TTAA	2 cut(s)	521, 1146
SatI	GCNGC	6 cut(s)	68, 456, 477, 687, 708, 1318
Sau3AI	GATC	6 cut(s)	302, 406, 972, 1165, 1345, 1378
Sau96I	GGNCC	1 cut(s)	725
SchI	GAGTC	4 cut(s)	50, 506, 862, 872
ScrFI	CCNGG	1 cut(s)	542
SduI	GDGCHC	3 cut(s)	466, 901, 1418
SfaNI	GCATC	3 cut(s)	97, 442, 821
SmiMI	CAYNNNNRTG	2 cut(s)	391, 1329
SmlI	CTYRAG	1 cut(s)	1405
SmoI	CTYRAG	1 cut(s)	1405
SsiI	CCGC	2 cut(s)	687, 1317
SspMI	CTAG	7 cut(s)	261, 459, 473, 894, 1176, 1221, 1394
SstI	GAGCTC	1 cut(s)	466
StyD4I	CCNGG	1 cut(s)	540
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	6 cut(s)	122, 133, 335, 940, 1004, 1250
TaiI	ACGT	6 cut(s)	534, 660, 705, 824, 1403, 1426
TaqI	TCGA	5 cut(s)	5, 349, 815, 945, 1293
TauI	GCSGC	2 cut(s)	689, 1320
TfiI	GAWTC	4 cut(s)	775, 947, 1108, 1430
Tru1I	TTAA	2 cut(s)	521, 1146
Tru9I	TTAA	2 cut(s)	521, 1146
TscAI	CASTG	2 cut(s)	262, 880
TseFI	GTSAC	1 cut(s)	875
TseI	GCWGC	4 cut(s)	67, 455, 476, 707
Tsp45I	GTSAC	1 cut(s)	875
TspDTI	ATGAA	4 cut(s)	23, 566, 1268, 1313
TspGWI	ACGGA	2 cut(s)	419, 507
TspRI	CASTG	2 cut(s)	262, 880
VspI	ATTAAT	1 cut(s)	1146
XagI	CCTNNNNNAGG	1 cut(s)	168
XapI	RAATTY	4 cut(s)	277, 511, 791, 1259
XmnI	GAANNNNTTC	2 cut(s)	277, 576
XspI	CTAG	7 cut(s)	261, 459, 473, 894, 1176, 1221, 1394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.