Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004058.1

Orthogroup ID

OG0002546

Physical Location & Seq

Genomic Coordinates Reverse (-)

118528 .. 119307

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004058.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

atgctctgttttaaattgaattttattatttactcagatgctgaagaggaagctgccagagcttatgatattgcaatgataagggtgagaggtaggagtgcgttccccaattttgatataagtctatatgatgtccaagccattctggatagcacaacctttccaagaaatggtgctttgaagacgttaaagcggaattcagttgatgatgtgcatcaaaagagaagaaagactcgcaatgtctccagctcaacccttggtgccccaccatcacttcacccaatagatcaaactcaaacaacaacaatcaattcatggcttcagtatcaatttttgatcccttccctccaagttataactgtccctcatggttaccaaaaccctacctctgaagcaaaccgaagtttcaatcctcagtatgactatggtggaagtgagccaacagcccagtttcaacctatcatacccttactgattcaagagtttccatctcaccagtactctaacggcagttcccagcaccaccttgatcaaacccctagctctcacttccttcacgacactcagaaccctaatcttgttgctaggttgaacaatctagcaagtgaaagctgtatggaagaattttccagcagtcaggttcatgacgcgagtttcaagatgatggggacgaacgagggtggtgctcatagtgatggcagcaatcaagtagttggaaatcttggtgatcctgaggttgggctgggcaattctgacttggatcctgctagctggctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010449 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0035266 GO:0040007 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098727 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

259

Amino Acids

28.73

Weight (kDa)

5.36

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23031
malus_domestica	MD17G1047700.v1.1
prunus_persica	Prupe.7G069100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480851 RchiOBHm_Chr3g0480891
rosa_laevigata	RLG00000023444 RLG00000023445 RLG00000023447 RLG00000034573
rosa_multiflora	Rmu_sc0004058.1_g000024 Rmu_sc0004838.1_g000011 Rmu_sc0006028.1_g000028 Rmu_sc0012984.1_g000002 Rmu_sc0012984.1_g000013
rosa_roxburghii	Rroxscaffold_1G00032960 Rroxscaffold_6G00400920 Rroxscaffold_6G00400960
rosa_rugosa	Rorug03G0186900 Rorug03G0187000 Rorug03G0187000 Rorug03G0187200 Rorug03G0187300 Rorug05G0241400
rosa_samantha	Rh3AG238500 Rh3AG238600 Rh3BG272000 Rh3BG272500 Rh3BG272700 Rh3BG272800 Rh3CG267800 Rh3CG268300 Rh3DG264100 Rh3DG264400 Rh5AG321600 Rh5BG331900 Rh5CG357200 Rh5DG343700
rosa_wichuraiana	Rw0G006160 Rw3G021350 Rw3G021360 Rw5G030350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	356
AccB1I	GGYRCC	1 cut(s)	260
AccB7I	CCANNNNNTGG	1 cut(s)	170
AccII	CGCG	1 cut(s)	650
AciI	CCGC	1 cut(s)	193
AclWI	GGATC	4 cut(s)	331, 722, 755, 768
AcsI	RAATTY	3 cut(s)	19, 196, 623
AcuI	CTGAAG	3 cut(s)	63, 305, 411
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	2 cut(s)	170, 737
AgsI	TTSAA	7 cut(s)	19, 181, 409, 455, 479, 592, 658
AluBI	AGCT	6 cut(s)	53, 62, 249, 543, 612, 771
AluI	AGCT	6 cut(s)	53, 62, 249, 543, 612, 771
Alw21I	GWGCWC	1 cut(s)	688
Alw26I	GTCTC	1 cut(s)	247
AlwI	GGATC	4 cut(s)	331, 722, 755, 768
AlwNI	CAGNNNCTG	1 cut(s)	41
ApeKI	GCWGC	2 cut(s)	53, 699
ApoI	RAATTY	3 cut(s)	19, 196, 623
AsuHPI	GGTGA	4 cut(s)	97, 269, 485, 737
AsuNHI	GCTAGC	1 cut(s)	767
AxyI	CCTNAGG	1 cut(s)	732
BaeGI	GKGCMC	1 cut(s)	265
BamHI	GGATCC	1 cut(s)	760
BanI	GGYRCC	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	688
BbvI	GCAGC	2 cut(s)	40, 711
BccI	CCATC	4 cut(s)	277, 496, 658, 689
BceAI	ACGGC	1 cut(s)	523
BcgI	CGANNNNNNTGC	2 cut(s)	665, 699
BclI	TGATCA	1 cut(s)	529
BcoDI	GTCTC	1 cut(s)	247
BfaI	CTAG	4 cut(s)	540, 585, 599, 768
BisI	GCNGC	2 cut(s)	54, 700
BlsI	GCNGC	2 cut(s)	55, 701
BmcAI	AGTACT	1 cut(s)	500
BmiI	GGNNCC	2 cut(s)	262, 762
BmrI	ACTGGG	1 cut(s)	442
BmsI	GCATC	2 cut(s)	28, 223
BmtI	GCTAGC	1 cut(s)	771
BmuI	ACTGGG	1 cut(s)	442
BpiI	GAAGAC	1 cut(s)	188
BpmI	CTGGAG	1 cut(s)	229
BsaBI	GATNNNNATC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 737
Bse1I	ACTGG	2 cut(s)	448, 496
Bse21I	CCTNAGG	1 cut(s)	732
Bse3DI	GCAATG	2 cut(s)	81, 244
Bse8I	GATNNNNATC	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	256
BseJI	GATNNNNATC	1 cut(s)	213
BseLI	CCNNNNNNNGG	2 cut(s)	170, 737
BseMI	GCAATG	2 cut(s)	81, 244
BseMII	CTCAG	4 cut(s)	48, 428, 578, 723
BseNI	ACTGG	2 cut(s)	448, 496
BseSI	GKGCMC	1 cut(s)	265
BseXI	GCAGC	2 cut(s)	40, 711
BseYI	CCCAGC	2 cut(s)	516, 742
Bsh1236I	CGCG	1 cut(s)	650
BshNI	GGYRCC	1 cut(s)	260
BsiHKAI	GWGCWC	1 cut(s)	688
BslFI	GGGAC	2 cut(s)	347, 682
BslI	CCNNNNNNNGG	2 cut(s)	170, 737
BsmAI	GTCTC	1 cut(s)	247
BsmFI	GGGAC	2 cut(s)	347, 682
Bsp1286I	GDGCHC	2 cut(s)	265, 688
Bsp143I	GATC	5 cut(s)	286, 336, 529, 727, 760
BspACI	CCGC	1 cut(s)	193
BspCNI	CTCAG	4 cut(s)	47, 427, 577, 724
BspFNI	CGCG	1 cut(s)	650
BspHI	TCATGA	1 cut(s)	643
BspLI	GGNNCC	2 cut(s)	262, 762
BspOI	GCTAGC	1 cut(s)	771
BspPI	GGATC	4 cut(s)	331, 722, 755, 768
BspT107I	GGYRCC	1 cut(s)	260
BsrDI	GCAATG	2 cut(s)	81, 244
BsrI	ACTGG	2 cut(s)	448, 496
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	5 cut(s)	286, 336, 529, 727, 760
BssT1I	CCWWGG	1 cut(s)	256
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	1 cut(s)	39
BstC8I	GCNNGC	2 cut(s)	769, 773
BstDEI	CTNAG	4 cut(s)	34, 414, 564, 732
BstEII	GGTNACC	1 cut(s)	371
BstFNI	CGCG	1 cut(s)	650
BstKTI	GATC	5 cut(s)	289, 339, 532, 730, 763
BstMAI	GTCTC	1 cut(s)	247
BstMBI	GATC	5 cut(s)	286, 336, 529, 727, 760
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstPI	GGTNACC	1 cut(s)	371
BstSLI	GKGCMC	1 cut(s)	265
BstUI	CGCG	1 cut(s)	650
BstV1I	GCAGC	2 cut(s)	40, 711
BstV2I	GAAGAC	1 cut(s)	188
BstX2I	RGATCY	1 cut(s)	760
BstYI	RGATCY	1 cut(s)	760
Bsu36I	CCTNAGG	1 cut(s)	732
Cac8I	GCNNGC	2 cut(s)	769, 773
CaiI	CAGNNNCTG	1 cut(s)	41
CciI	TCATGA	1 cut(s)	643
CseI	GACGC	1 cut(s)	656
Csp6I	GTAC	1 cut(s)	499
CviAII	CATG	3 cut(s)	315, 368, 644
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	4 cut(s)	34, 414, 564, 732
DpnI	GATC	5 cut(s)	288, 338, 531, 729, 762
DpnII	GATC	5 cut(s)	286, 336, 529, 727, 760
DraI	TTTAAA	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	256
Eco57I	CTGAAG	3 cut(s)	63, 305, 411
Eco81I	CCTNAGG	1 cut(s)	732
Eco91I	GGTNACC	1 cut(s)	371
EcoO65I	GGTNACC	1 cut(s)	371
EcoRI	GAATTC	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	3 cut(s)	318, 371, 647
FaqI	GGGAC	2 cut(s)	347, 682
FatI	CATG	3 cut(s)	314, 367, 643
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	2 cut(s)	54, 700
Fsp4HI	GCNGC	2 cut(s)	54, 700
FspBI	CTAG	4 cut(s)	540, 585, 599, 768
GluI	GCNGC	2 cut(s)	54, 700
GsaI	CCCAGC	2 cut(s)	520, 746
GsuI	CTGGAG	1 cut(s)	229
HgaI	GACGC	1 cut(s)	656
Hin1II	CATG	3 cut(s)	318, 371, 647
HinfI	GANTC	2 cut(s)	232, 475
HphI	GGTGA	4 cut(s)	97, 269, 485, 737
Hpy188I	TCNGA	4 cut(s)	37, 391, 567, 754
Hpy188III	TCNNGA	6 cut(s)	146, 479, 557, 644, 658, 731
HpyAV	CCTTC	2 cut(s)	351, 563
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	2 cut(s)	74, 214
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	4 cut(s)	34, 414, 564, 732
HpySE526I	ACGT	1 cut(s)	185
Hsp92II	CATG	3 cut(s)	318, 371, 647
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	5 cut(s)	286, 336, 529, 727, 760
Lsp1109I	GCAGC	2 cut(s)	40, 711
LweI	GCATC	2 cut(s)	28, 223
MaeI	CTAG	4 cut(s)	540, 585, 599, 768
MaeII	ACGT	1 cut(s)	185
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	5 cut(s)	288, 338, 531, 729, 762
MboI	GATC	5 cut(s)	286, 336, 529, 727, 760
MboII	GAAGA	4 cut(s)	56, 193, 237, 632
MflI	RGATCY	1 cut(s)	760
MhlI	GDGCHC	2 cut(s)	265, 688
MluCI	AATT	8 cut(s)	14, 19, 109, 196, 310, 329, 623, 748
MlyI	GAGTC	1 cut(s)	226
MmeI	TCCRAC	1 cut(s)	694
MnlI	CCTC	8 cut(s)	40, 83, 356, 375, 397, 423, 670, 727
MseI	TTAA	2 cut(s)	12, 188
MslI	CAYNNNNRTG	1 cut(s)	693
MvnI	CGCG	1 cut(s)	650
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeII	GATC	5 cut(s)	286, 336, 529, 727, 760
NheI	GCTAGC	1 cut(s)	767
NlaIII	CATG	3 cut(s)	318, 371, 647
NlaIV	GGNNCC	2 cut(s)	262, 762
PagI	TCATGA	1 cut(s)	643
PfeI	GAWTC	1 cut(s)	475
PflMI	CCANNNNNTGG	1 cut(s)	170
PkrI	GCNGC	2 cut(s)	55, 701
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
PsiI	TTATAA	1 cut(s)	356
PspEI	GGTNACC	1 cut(s)	371
PspFI	CCCAGC	2 cut(s)	516, 742
PspN4I	GGNNCC	2 cut(s)	262, 762
PstNI	CAGNNNCTG	1 cut(s)	41
PsuI	RGATCY	1 cut(s)	760
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
RseI	CAYNNNNRTG	1 cut(s)	693
SaqAI	TTAA	2 cut(s)	12, 188
SatI	GCNGC	2 cut(s)	54, 700
Sau3AI	GATC	5 cut(s)	286, 336, 529, 727, 760
ScaI	AGTACT	1 cut(s)	500
SchI	GAGTC	1 cut(s)	226
SduI	GDGCHC	2 cut(s)	265, 688
SfaNI	GCATC	2 cut(s)	28, 223
SmiMI	CAYNNNNRTG	1 cut(s)	693
Sse9I	AATT	8 cut(s)	14, 19, 109, 196, 310, 329, 623, 748
SsiI	CCGC	1 cut(s)	193
SspMI	CTAG	4 cut(s)	540, 585, 599, 768
StyI	CCWWGG	1 cut(s)	256
TaaI	ACNGT	1 cut(s)	361
TaiI	ACGT	1 cut(s)	188
TasI	AATT	8 cut(s)	14, 19, 109, 196, 310, 329, 623, 748
TatI	WGTACW	1 cut(s)	498
TfiI	GAWTC	1 cut(s)	475
Tru1I	TTAA	2 cut(s)	12, 188
Tru9I	TTAA	2 cut(s)	12, 188
TseI	GCWGC	2 cut(s)	53, 699
TspDTI	ATGAA	2 cut(s)	303, 632
Van91I	CCANNNNNTGG	1 cut(s)	170
XapI	RAATTY	3 cut(s)	19, 196, 623
XspI	CTAG	4 cut(s)	540, 585, 599, 768
ZrmI	AGTACT	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.