Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002546

Physical Location & Seq

Genomic Coordinates Forward (+)

23150736 .. 23153929

Gene Structure 3194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00400920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGAACAGAGATAGCTTCCGTTTCCATTCTTCCGAGTCCATGGACAGCAATTTATACTTGCAGCCTGATAACCCATTTCAACTTCCAAGTTCCATAAGAGATGCGCCAAATGACTGTAATTTTACTGTTGCTAACTATCCAGTTCCACCACCATTGCCTTTGGGAGGTTATGAGGGTTTTATAACTGGGGCAAACAACAGCACTTCTGGAGGGAAACAAATTAGGTACGAAAATGGACGATGTGAAGCATTCATATGGGATAACACGGATCCAGAAGAGAAATCCAAGACAAATACGGAAGTGCAAGCCGCCGAAGCCTATGACGTTGCAGCTATAAGGGTGAAAGGGCCGAAAGCAATCACCAATTTTGATAAAAGTAACTACGATGTCAAACAGATTCTTGAAAGCCCAAAATTTCTAATTGATAAAGGTGCATCGAAGACGTTGAAGCGAAGTTCAGTTGATGATGTGCTTCATAAGAGAAGAAAGACTCGCAGTGACTCCAGCTCAACCCCTAGTGCCCCACCATCACTTCACCCAATAGATCAAACTCAACCAACAGTAATCGATTCAAGCCGTCAATATCAATTTCCGATCCCTTACCTCCAAGTTCCAGTCCCTCACGGTTACCAAAGCCCTATCTTGGAAGCAAACCGAAGTTTCAGTCCTCAGTATGACTATGGTGGAAGTGAGCAAATAGCCCAGCGTCAACCTATCATACCCTTATTGAATCAAGAGTTTCCATCTCATCAGTATTGTAACAGAAATTCCCAGCACCACCTTGATCAAACCCCTAGCTCCCAGTTCCTTCAAGACACTCAGAACCCTAATCTTGTTGCTGGGTTGAACAACCTTGCAAGTGATAGCTGTATGGAAGAATTTTCCAGCAGTCAGGTTCATGAGGCGAGTTTCGAGATGATGGGGACGAACGAGGGTGGCGTTCATGGTGATGGAAATCTTGGTGATCCTGTGTTTGGGCTGGGCAATTCTGACTTGGATCCTGGGAGCTGGCTACAAACGTTCTTGAGGATGAGCCCACAACGTCCTGATTCTAAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010449 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0035266 GO:0040007 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098727 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

353

Amino Acids

39.2

Weight (kDa)

5.19

Isoelectric Point (pI)

59.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23031
malus_domestica	MD17G1047700.v1.1
prunus_persica	Prupe.7G069100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480851 RchiOBHm_Chr3g0480891
rosa_laevigata	RLG00000023444 RLG00000023445 RLG00000023447 RLG00000034573
rosa_multiflora	Rmu_sc0004058.1_g000024 Rmu_sc0004838.1_g000011 Rmu_sc0006028.1_g000028 Rmu_sc0012984.1_g000002 Rmu_sc0012984.1_g000013
rosa_roxburghii	Rroxscaffold_1G00032960 Rroxscaffold_6G00400920 Rroxscaffold_6G00400960
rosa_rugosa	Rorug03G0186900 Rorug03G0187000 Rorug03G0187000 Rorug03G0187200 Rorug03G0187300 Rorug05G0241400
rosa_samantha	Rh3AG238500 Rh3AG238600 Rh3BG272000 Rh3BG272500 Rh3BG272700 Rh3BG272800 Rh3CG267800 Rh3CG268300 Rh3DG264100 Rh3DG264400 Rh5AG321600 Rh5BG331900 Rh5CG357200 Rh5DG343700
rosa_wichuraiana	Rw0G006160 Rw3G021350 Rw3G021360 Rw5G030350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	182
AciI	CCGC	1 cut(s)	309
AclI	AACGTT	1 cut(s)	1019
AclWI	GGATC	6 cut(s)	263, 276, 589, 959, 992, 1005
AcsI	RAATTY	3 cut(s)	413, 766, 878
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	3 cut(s)	164, 643, 974
AgsI	TTSAA	7 cut(s)	80, 404, 448, 573, 730, 812, 847
AjnI	CCWGG	1 cut(s)	1000
AluBI	AGCT	6 cut(s)	15, 332, 507, 798, 867, 1008
AluI	AGCT	6 cut(s)	15, 332, 507, 798, 867, 1008
AlwI	GGATC	6 cut(s)	263, 276, 589, 959, 992, 1005
AoxI	GGCC	1 cut(s)	347
ApeKI	GCWGC	2 cut(s)	61, 329
ApoI	RAATTY	3 cut(s)	413, 766, 878
ArsI	GACNNNNNNTTYG	2 cut(s)	649, 681
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	1 cut(s)	347
AsuHPI	GGTGA	5 cut(s)	352, 352, 527, 959, 974
BaeGI	GKGCMC	1 cut(s)	523
BamHI	GGATCC	2 cut(s)	268, 997
BanII	GRGCYC	1 cut(s)	1037
BbsI	GAAGAC	1 cut(s)	446
BbvI	GCAGC	2 cut(s)	73, 341
BccI	CCATC	4 cut(s)	535, 751, 913, 944
BceAI	ACGGC	1 cut(s)	561
BciT130I	CCWGG	1 cut(s)	1002
BclI	TGATCA	1 cut(s)	784
BfaI	CTAG	2 cut(s)	516, 795
BisI	GCNGC	3 cut(s)	62, 309, 330
BlsI	GCNGC	3 cut(s)	63, 310, 331
Bme1390I	CCNGG	1 cut(s)	1002
BmgT120I	GGNCC	1 cut(s)	347
BmiI	GGNNCC	2 cut(s)	270, 999
BmrFI	CCNGG	1 cut(s)	1002
BmrI	ACTGGG	2 cut(s)	195, 796
BmsI	GCATC	2 cut(s)	91, 443
BmuI	ACTGGG	2 cut(s)	195, 796
BpiI	GAAGAC	1 cut(s)	446
BpmI	CTGGAG	2 cut(s)	228, 487
BpuEI	CTTGAG	1 cut(s)	1045
Bsa29I	ATCGAT	1 cut(s)	567
BsaBI	GATNNNNATC	1 cut(s)	954
BsaJI	CCNNGG	2 cut(s)	39, 1001
Bsc4I	CCNNNNNNNGG	3 cut(s)	164, 643, 974
Bse1I	ACTGG	4 cut(s)	140, 190, 614, 802
Bse3DI	GCAATG	1 cut(s)	152
Bse8I	GATNNNNATC	1 cut(s)	954
BseBI	CCWGG	1 cut(s)	1002
BseCI	ATCGAT	1 cut(s)	567
BseDI	CCNNGG	2 cut(s)	39, 1001
BseGI	GGATG	1 cut(s)	1035
BseJI	GATNNNNATC	1 cut(s)	954
BseLI	CCNNNNNNNGG	3 cut(s)	164, 643, 974
BseMI	GCAATG	1 cut(s)	152
BseMII	CTCAG	2 cut(s)	683, 833
BseNI	ACTGG	4 cut(s)	140, 190, 614, 802
BseSI	GKGCMC	1 cut(s)	523
BseXI	GCAGC	2 cut(s)	73, 341
BseYI	CCCAGC	4 cut(s)	702, 771, 839, 979
BshFI	GGCC	1 cut(s)	349
BshVI	ATCGAT	1 cut(s)	567
BslFI	GGGAC	2 cut(s)	602, 937
BslI	CCNNNNNNNGG	3 cut(s)	164, 643, 974
BsmFI	GGGAC	2 cut(s)	602, 937
BsmI	GAATGC	1 cut(s)	248
BsnI	GGCC	1 cut(s)	349
Bsp1286I	GDGCHC	2 cut(s)	523, 1037
Bsp143I	GATC	6 cut(s)	268, 544, 594, 784, 964, 997
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	1 cut(s)	309
BspANI	GGCC	1 cut(s)	349
BspCNI	CTCAG	2 cut(s)	682, 832
BspDI	ATCGAT	1 cut(s)	567
BspHI	TCATGA	1 cut(s)	898
BspLI	GGNNCC	2 cut(s)	270, 999
BspPI	GGATC	6 cut(s)	263, 276, 589, 959, 992, 1005
BsrDI	GCAATG	1 cut(s)	152
BsrI	ACTGG	4 cut(s)	140, 190, 614, 802
BssECI	CCNNGG	2 cut(s)	39, 1001
BssMI	GATC	6 cut(s)	268, 544, 594, 784, 964, 997
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	1002
Bst4CI	ACNGT	4 cut(s)	116, 127, 562, 626
Bst6I	CTCTTC	1 cut(s)	270
BstC8I	GCNNGC	2 cut(s)	306, 1010
BstDEI	CTNAG	3 cut(s)	669, 819, 1053
BstDSI	CCRYGG	1 cut(s)	39
BstEII	GGTNACC	1 cut(s)	626
BstENI	CCTNNNNNAGG	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	1035
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	6 cut(s)	271, 547, 597, 787, 967, 1000
BstMBI	GATC	6 cut(s)	268, 544, 594, 784, 964, 997
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstNI	CCWGG	1 cut(s)	1002
BstPI	GGTNACC	1 cut(s)	626
BstSCI	CCNGG	1 cut(s)	1000
BstSLI	GKGCMC	1 cut(s)	523
BstV1I	GCAGC	2 cut(s)	73, 341
BstV2I	GAAGAC	1 cut(s)	446
BstX2I	RGATCY	2 cut(s)	268, 997
BstYI	RGATCY	2 cut(s)	268, 997
Bsu15I	ATCGAT	1 cut(s)	567
BsuRI	GGCC	1 cut(s)	349
BsuTUI	ATCGAT	1 cut(s)	567
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	1035
BtsI	GCAGTG	1 cut(s)	502
BtsIMutI	CAGTG	1 cut(s)	502
Cac8I	GCNNGC	2 cut(s)	306, 1010
CciI	TCATGA	1 cut(s)	898
CfoI	GCGC	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	347
ClaI	ATCGAT	1 cut(s)	567
CseI	GACGC	1 cut(s)	695
Csp6I	GTAC	1 cut(s)	226
CspCI	CAANNNNNGTGG	2 cut(s)	135, 170
CviAII	CATG	3 cut(s)	40, 899, 944
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	3 cut(s)	669, 819, 1053
DpnI	GATC	6 cut(s)	270, 546, 596, 786, 966, 999
DpnII	GATC	6 cut(s)	268, 544, 594, 784, 964, 997
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	1037
Eco91I	GGTNACC	1 cut(s)	626
EcoNI	CCTNNNNNAGG	1 cut(s)	162
EcoO65I	GGTNACC	1 cut(s)	626
EcoRII	CCWGG	1 cut(s)	1000
EcoT14I	CCWWGG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	1037
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	3 cut(s)	43, 902, 947
FaqI	GGGAC	2 cut(s)	602, 937
FatI	CATG	3 cut(s)	39, 898, 943
FauNDI	CATATG	1 cut(s)	254
FbaI	TGATCA	1 cut(s)	784
Fnu4HI	GCNGC	3 cut(s)	62, 309, 330
FokI	GGATG	1 cut(s)	1042
FriOI	GRGCYC	1 cut(s)	1037
Fsp4HI	GCNGC	3 cut(s)	62, 309, 330
FspBI	CTAG	2 cut(s)	516, 795
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	3 cut(s)	62, 309, 330
GsaI	CCCAGC	4 cut(s)	706, 775, 843, 983
GsuI	CTGGAG	2 cut(s)	228, 487
HaeIII	GGCC	1 cut(s)	349
HgaI	GACGC	1 cut(s)	695
HhaI	GCGC	1 cut(s)	106
Hin1II	CATG	3 cut(s)	43, 902, 947
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HincII	GTYRAC	1 cut(s)	710
HindII	GTYRAC	1 cut(s)	710
HinfI	GANTC	7 cut(s)	35, 397, 490, 500, 569, 730, 1049
HphI	GGTGA	5 cut(s)	352, 352, 527, 959, 974
Hpy166II	GTNNAC	1 cut(s)	710
Hpy188I	TCNGA	4 cut(s)	34, 594, 822, 991
Hpy188III	TCNNGA	9 cut(s)	207, 272, 401, 734, 812, 899, 913, 1024, 1046
Hpy8I	GTNNAC	1 cut(s)	710
HpyAV	CCTTC	1 cut(s)	818
HpyCH4III	ACNGT	4 cut(s)	116, 127, 562, 626
HpyCH4IV	ACGT	4 cut(s)	324, 443, 1019, 1042
HpyCH4V	TGCA	5 cut(s)	61, 304, 329, 434, 857
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	3 cut(s)	669, 819, 1053
HpySE526I	ACGT	4 cut(s)	324, 443, 1019, 1042
Hsp92II	CATG	3 cut(s)	43, 902, 947
HspAI	GCGC	1 cut(s)	104
Ksp22I	TGATCA	1 cut(s)	784
Kzo9I	GATC	6 cut(s)	268, 544, 594, 784, 964, 997
LmnI	GCTCC	2 cut(s)	803, 1005
Lsp1109I	GCAGC	2 cut(s)	73, 341
LweI	GCATC	2 cut(s)	91, 443
MaeI	CTAG	2 cut(s)	516, 795
MaeII	ACGT	4 cut(s)	324, 443, 1019, 1042
MaeIII	GTNAC	4 cut(s)	377, 497, 626, 758
MalI	GATC	6 cut(s)	270, 546, 596, 786, 966, 999
MboI	GATC	6 cut(s)	268, 544, 594, 784, 964, 997
MboII	GAAGA	5 cut(s)	21, 287, 451, 495, 887
MflI	RGATCY	2 cut(s)	268, 997
MhlI	GDGCHC	2 cut(s)	523, 1037
MlyI	GAGTC	3 cut(s)	44, 484, 494
MnlI	CCTC	9 cut(s)	158, 166, 203, 614, 630, 678, 895, 925, 1020
MslI	CAYNNNNRTG	2 cut(s)	253, 948
MspR9I	CCNGG	1 cut(s)	1002
Mva1269I	GAATGC	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	1002
MwoI	GCNNNNNNNGC	1 cut(s)	314
NcoI	CCATGG	1 cut(s)	39
NdeI	CATATG	1 cut(s)	254
NdeII	GATC	6 cut(s)	268, 544, 594, 784, 964, 997
NlaIII	CATG	3 cut(s)	43, 902, 947
NlaIV	GGNNCC	2 cut(s)	270, 999
NmuCI	GTSAC	1 cut(s)	497
PagI	TCATGA	1 cut(s)	898
PcsI	WCGNNNNNNNCGW	1 cut(s)	936
PctI	GAATGC	1 cut(s)	248
PfeI	GAWTC	4 cut(s)	397, 569, 730, 1049
PkrI	GCNGC	3 cut(s)	63, 310, 331
PleI	GAGTC	3 cut(s)	43, 484, 494
PpsI	GAGTC	3 cut(s)	43, 484, 494
PsiI	TTATAA	1 cut(s)	182
Psp1406I	AACGTT	1 cut(s)	1019
Psp6I	CCWGG	1 cut(s)	1000
PspEI	GGTNACC	1 cut(s)	626
PspFI	CCCAGC	4 cut(s)	702, 771, 839, 979
PspGI	CCWGG	1 cut(s)	1000
PspN4I	GGNNCC	2 cut(s)	270, 999
PspPI	GGNCC	1 cut(s)	347
PsuI	RGATCY	2 cut(s)	268, 997
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
RseI	CAYNNNNRTG	2 cut(s)	253, 948
SatI	GCNGC	3 cut(s)	62, 309, 330
Sau3AI	GATC	6 cut(s)	268, 544, 594, 784, 964, 997
Sau96I	GGNCC	1 cut(s)	347
SchI	GAGTC	3 cut(s)	44, 484, 494
ScrFI	CCNGG	1 cut(s)	1002
SduI	GDGCHC	2 cut(s)	523, 1037
SfaNI	GCATC	2 cut(s)	91, 443
SmiMI	CAYNNNNRTG	2 cut(s)	253, 948
SmlI	CTYRAG	1 cut(s)	1024
SmoI	CTYRAG	1 cut(s)	1024
SsiI	CCGC	1 cut(s)	309
SspMI	CTAG	2 cut(s)	516, 795
StyD4I	CCNGG	1 cut(s)	1000
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	4 cut(s)	116, 127, 562, 626
TaiI	ACGT	4 cut(s)	327, 446, 1022, 1045
TaqI	TCGA	3 cut(s)	437, 567, 912
TauI	GCSGC	1 cut(s)	311
TfiI	GAWTC	4 cut(s)	397, 569, 730, 1049
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	2 cut(s)	61, 329
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	5 cut(s)	17, 241, 464, 887, 932
TspGWI	ACGGA	3 cut(s)	8, 281, 311
TspRI	CASTG	1 cut(s)	502
XagI	CCTNNNNNAGG	1 cut(s)	162
XapI	RAATTY	3 cut(s)	413, 766, 878
XspI	CTAG	2 cut(s)	516, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.