Rh5AG321600
TCP Family

T-complex protein 1 subunit

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
47722033 .. 47742778
20746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG321600.1

Sequence Viewer

Length: 1131 bp
ATGCAATCCCAAGTGCTCGTTCTCAAGGACTCTTTGAAGCGGGAGTCTGGGAGTAAAGTGCACCATGCTAATATCCAGGCTTCAAAGGCTGTTGCTGACATCATCCGTACAACCTTGGGACCGAGGTCCATGTTAAAGATGCTACTGGATGCTAGTGGAGAAGTAGAAACTAGGCATAACTCTAGATCCACTGTTGACACCTGTAGGGAAAATGGAAGCTGGACACCTATATCTGTGTCCAATGGCAATTCCGCAATTTGGCCATATGAAGCTGCTGCTGTAGCTTTTGAGGCTATACCACGAACATTGGCTCAGAACTGTGGGGTTAATGTCATTAGAACGATGACAGCGCTGCAAGGAAAGAATTCAATAGCCAGAGTCAGATATGATGCTGAAGAGGAAGCTGCCAGAGCTTATGATATTGCAATGATAAGGGTGAGAGGTAGGAGTGCGTTCCCCAATTTTGATATAAGTCTATATGATGTCCAAGCCATTCTGGATAGCACAACCTTTCCAAGAAATGGTGCTTTGAAGACGTTAAAGCGGAATTCAGTTGATGATGTGCATCAAAAGAGAAGAAAGACTCGCAATGTCTCCAGCTCAACCCTTGGTGCCCCACCATCACTTCACCCAATAGATCAAACTCAAACAACAACAATCAATTCATGGCTTCAGTATCAATTTTTGATCCCTTCCCTCCAAATTATAACTGTCCCTCATGGTTACCAAAACCCTACCTCTGAAGCAAACCGAAGTTTCAATCCTCAGTATGACTATGGTGGAAGTGAGCCAACAGCCCAGTTTCAACCTATCATACCCTTACTGATTCAAGAGTTTCCATCTCACCAGTACTCTAACGGCAGTTCCCAGCACCACCTTGATCAAACCCCTAGCTCTCACTTCCTTCACGACACTCAGAACCCTAATCTTGTTGCTAGGTTGAACAATCTAGCAAGTGAAAGCTGTATGGAAGAATTTTCCAGCAGTCAGGTTCATGACGCGAGTTTCAAGATGATGGGGACGAACGAGGGTGGTGCTCATAGTGATGGCAGCAATCAAGTAGTTGGAAATCTTGGTGATCCTGAGGTTGGGCTGGGCAATTCTGACTTGGATCCTGCTAGCTGGCTGTAA

Protein Analysis

376

Amino Acids

41.3

Weight (kDa)

6.22

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 707
AccB1I GGYRCC 1 cut(s) 611
AccB7I CCANNNNNTGG 1 cut(s) 521
AccII CGCG 1 cut(s) 1001
AciI CCGC 3 cut(s) 40, 252, 544
AclWI GGATC 5 cut(s) 180, 682, 1073, 1106, 1119
AcoI YGGCCR 1 cut(s) 260
AcsI RAATTY 3 cut(s) 364, 547, 974
AcuI CTGAAG 3 cut(s) 414, 656, 762
AfaI GTAC 2 cut(s) 109, 851
AfeI AGCGCT 1 cut(s) 351
AfiI CCNNNNNNNGG 3 cut(s) 258, 521, 1088
AgsI TTSAA 9 cut(s) 37, 84, 369, 532, 760, 806, 830, 943, 1009
AjnI CCWGG 1 cut(s) 75
AjuI GAANNNNNNNTTGG 1 cut(s) 35
AluBI AGCT 9 cut(s) 219, 272, 284, 404, 413, 600, 894, 963, 1122
AluI AGCT 9 cut(s) 219, 272, 284, 404, 413, 600, 894, 963, 1122
Alw21I GWGCWC 3 cut(s) 18, 63, 1039
Alw26I GTCTC 1 cut(s) 598
Alw44I GTGCAC 1 cut(s) 59
AlwI GGATC 5 cut(s) 180, 682, 1073, 1106, 1119
Aor51HI AGCGCT 1 cut(s) 351
AoxI GGCC 1 cut(s) 260
ApaLI GTGCAC 1 cut(s) 59
ApeKI GCWGC 5 cut(s) 272, 275, 352, 404, 1050
ApoI RAATTY 3 cut(s) 364, 547, 974
Asp700I GAANNNNTTC 1 cut(s) 364
AspLEI GCGC 1 cut(s) 352
AspS9I GGNCC 2 cut(s) 119, 126
AsuHPI GGTGA 4 cut(s) 448, 620, 836, 1088
AsuNHI GCTAGC 1 cut(s) 1118
AvaII GGWCC 2 cut(s) 119, 126
AxyI CCTNAGG 1 cut(s) 1083
BaeGI GKGCMC 2 cut(s) 63, 616
BalI TGGCCA 1 cut(s) 262
BamHI GGATCC 1 cut(s) 1111
BanI GGYRCC 1 cut(s) 611
BbsI GAAGAC 1 cut(s) 539
Bbv12I GWGCWC 3 cut(s) 18, 63, 1039
BbvI GCAGC 5 cut(s) 259, 262, 339, 391, 1062
BccI CCATC 4 cut(s) 628, 847, 1009, 1040
BceAI ACGGC 1 cut(s) 874
BcgI CGANNNNNNTGC 2 cut(s) 1016, 1050
BciT130I CCWGG 1 cut(s) 77
BclI TGATCA 1 cut(s) 880
BcoDI GTCTC 1 cut(s) 598
BfaI CTAG 7 cut(s) 153, 171, 183, 891, 936, 950, 1119
BfmI CTRYAG 2 cut(s) 202, 279
BfoI RGCGCY 1 cut(s) 353
BisI GCNGC 5 cut(s) 273, 276, 353, 405, 1051
BlsI GCNGC 5 cut(s) 274, 277, 354, 406, 1052
BmcAI AGTACT 1 cut(s) 851
Bme1390I CCNGG 1 cut(s) 77
Bme18I GGWCC 2 cut(s) 119, 126
BmgT120I GGNCC 2 cut(s) 119, 126
BmiI GGNNCC 3 cut(s) 120, 613, 1113
BmrFI CCNGG 1 cut(s) 77
BmrI ACTGGG 1 cut(s) 793
BmsI GCATC 4 cut(s) 129, 139, 379, 574
BmtI GCTAGC 1 cut(s) 1122
BmuI ACTGGG 1 cut(s) 793
BoxI GACNNNNGTC 1 cut(s) 124
BpiI GAAGAC 1 cut(s) 539
BpmI CTGGAG 1 cut(s) 580
BpuEI CTTGAG 1 cut(s) 8
BsaBI GATNNNNATC 1 cut(s) 564
BsaJI CCNNGG 3 cut(s) 114, 122, 607
Bsc4I CCNNNNNNNGG 3 cut(s) 258, 521, 1088
Bse1I ACTGG 3 cut(s) 150, 799, 847
Bse21I CCTNAGG 1 cut(s) 1083
Bse3DI GCAATG 2 cut(s) 432, 595
Bse8I GATNNNNATC 1 cut(s) 564
BseBI CCWGG 1 cut(s) 77
BseDI CCNNGG 3 cut(s) 114, 122, 607
BseGI GGATG 2 cut(s) 102, 154
BseJI GATNNNNATC 1 cut(s) 564
BseLI CCNNNNNNNGG 3 cut(s) 258, 521, 1088
BseMI GCAATG 2 cut(s) 432, 595
BseMII CTCAG 4 cut(s) 326, 779, 929, 1074
BseNI ACTGG 3 cut(s) 150, 799, 847
BseSI GKGCMC 2 cut(s) 63, 616
BseXI GCAGC 5 cut(s) 259, 262, 339, 391, 1062
BseYI CCCAGC 2 cut(s) 867, 1093
Bsh1236I CGCG 1 cut(s) 1001
BshFI GGCC 1 cut(s) 262
BshNI GGYRCC 1 cut(s) 611
BsiHKAI GWGCWC 3 cut(s) 18, 63, 1039
BslFI GGGAC 3 cut(s) 132, 698, 1033
BslI CCNNNNNNNGG 3 cut(s) 258, 521, 1088
BsmAI GTCTC 1 cut(s) 598
BsmFI GGGAC 3 cut(s) 132, 698, 1033
BsnI GGCC 1 cut(s) 262
Bsp1286I GDGCHC 4 cut(s) 18, 63, 616, 1039
Bsp143I GATC 6 cut(s) 185, 637, 687, 880, 1078, 1111
BspACI CCGC 3 cut(s) 40, 252, 544
BspANI GGCC 1 cut(s) 262
BspCNI CTCAG 4 cut(s) 325, 778, 928, 1075
BspFNI CGCG 1 cut(s) 1001
BspHI TCATGA 1 cut(s) 994
BspLI GGNNCC 3 cut(s) 120, 613, 1113
BspOI GCTAGC 1 cut(s) 1122
BspPI GGATC 5 cut(s) 180, 682, 1073, 1106, 1119
BspT107I GGYRCC 1 cut(s) 611
BsrDI GCAATG 2 cut(s) 432, 595
BsrI ACTGG 3 cut(s) 150, 799, 847
BssECI CCNNGG 3 cut(s) 114, 122, 607
BssMI GATC 6 cut(s) 185, 637, 687, 880, 1078, 1111
BssT1I CCWWGG 2 cut(s) 114, 607
Bst2UI CCWGG 1 cut(s) 77
Bst4CI ACNGT 3 cut(s) 193, 320, 712
Bst6I CTCTTC 1 cut(s) 390
BstC8I GCNNGC 2 cut(s) 1120, 1124
BstDEI CTNAG 4 cut(s) 312, 765, 915, 1083
BstEII GGTNACC 1 cut(s) 722
BstF5I GGATG 2 cut(s) 102, 154
BstFNI CGCG 1 cut(s) 1001
BstH2I RGCGCY 1 cut(s) 353
BstHHI GCGC 1 cut(s) 352
BstKTI GATC 6 cut(s) 188, 640, 690, 883, 1081, 1114
BstMAI GTCTC 1 cut(s) 598
BstMBI GATC 6 cut(s) 185, 637, 687, 880, 1078, 1111
BstMWI GCNNNNNNNGC 4 cut(s) 86, 281, 290, 410
BstNI CCWGG 1 cut(s) 77
BstPAI GACNNNNGTC 1 cut(s) 124
BstPI GGTNACC 1 cut(s) 722
BstSCI CCNGG 1 cut(s) 75
BstSFI CTRYAG 2 cut(s) 202, 279
BstSLI GKGCMC 2 cut(s) 63, 616
BstUI CGCG 1 cut(s) 1001
BstV1I GCAGC 5 cut(s) 259, 262, 339, 391, 1062
BstV2I GAAGAC 1 cut(s) 539
BstX2I RGATCY 2 cut(s) 185, 1111
BstYI RGATCY 2 cut(s) 185, 1111
Bsu36I CCTNAGG 1 cut(s) 1083
BsuRI GGCC 1 cut(s) 262
BtsCI GGATG 2 cut(s) 102, 154
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 2 cut(s) 1120, 1124
CciI TCATGA 1 cut(s) 994
CfoI GCGC 1 cut(s) 352
Cfr13I GGNCC 2 cut(s) 119, 126
CseI GACGC 1 cut(s) 1007
Csp6I GTAC 2 cut(s) 108, 850
CspCI CAANNNNNGTGG 2 cut(s) 288, 323
CviAII CATG 5 cut(s) 65, 130, 666, 719, 995
CviQI GTAC 2 cut(s) 108, 850
DdeI CTNAG 4 cut(s) 312, 765, 915, 1083
DpnI GATC 6 cut(s) 187, 639, 689, 882, 1080, 1113
DpnII GATC 6 cut(s) 185, 637, 687, 880, 1078, 1111
EaeI YGGCCR 1 cut(s) 260
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Eco130I CCWWGG 2 cut(s) 114, 607
Eco47I GGWCC 2 cut(s) 119, 126
Eco47III AGCGCT 1 cut(s) 351
Eco57I CTGAAG 3 cut(s) 414, 656, 762
Eco81I CCTNAGG 1 cut(s) 1083
Eco91I GGTNACC 1 cut(s) 722
EcoO65I GGTNACC 1 cut(s) 722
EcoRI GAATTC 2 cut(s) 364, 547
EcoRII CCWGG 1 cut(s) 75
EcoT14I CCWWGG 2 cut(s) 114, 607
ErhI CCWWGG 2 cut(s) 114, 607
FaeI CATG 5 cut(s) 68, 133, 669, 722, 998
FaqI GGGAC 3 cut(s) 132, 698, 1033
FatI CATG 5 cut(s) 64, 129, 665, 718, 994
FauI CCCGC 1 cut(s) 33
FauNDI CATATG 1 cut(s) 265
FbaI TGATCA 1 cut(s) 880
Fnu4HI GCNGC 5 cut(s) 273, 276, 353, 405, 1051
FokI GGATG 2 cut(s) 89, 161
Fsp4HI GCNGC 5 cut(s) 273, 276, 353, 405, 1051
FspBI CTAG 7 cut(s) 153, 171, 183, 891, 936, 950, 1119
GlaI GCGC 1 cut(s) 351
GluI GCNGC 5 cut(s) 273, 276, 353, 405, 1051
GsaI CCCAGC 2 cut(s) 871, 1097
GsuI CTGGAG 1 cut(s) 580
HaeII RGCGCY 1 cut(s) 353
HaeIII GGCC 1 cut(s) 262
HgaI GACGC 1 cut(s) 1007
HhaI GCGC 1 cut(s) 352
Hin1II CATG 5 cut(s) 68, 133, 669, 722, 998
Hin6I GCGC 1 cut(s) 350
HinP1I GCGC 1 cut(s) 350
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 5 cut(s) 29, 44, 378, 583, 826
HphI GGTGA 4 cut(s) 448, 620, 836, 1088
Hpy166II GTNNAC 2 cut(s) 61, 196
Hpy188I TCNGA 5 cut(s) 315, 383, 742, 918, 1105
Hpy188III TCNNGA 7 cut(s) 183, 497, 830, 908, 995, 1009, 1082
Hpy8I GTNNAC 2 cut(s) 61, 196
HpyAV CCTTC 2 cut(s) 702, 914
HpyCH4III ACNGT 3 cut(s) 193, 320, 712
HpyCH4IV ACGT 1 cut(s) 536
HpyCH4V TGCA 5 cut(s) 4, 61, 355, 425, 565
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 281, 290, 410
HpyF3I CTNAG 4 cut(s) 312, 765, 915, 1083
HpySE526I ACGT 1 cut(s) 536
Hsp92II CATG 5 cut(s) 68, 133, 669, 722, 998
HspAI GCGC 1 cut(s) 350
Ksp22I TGATCA 1 cut(s) 880
Kzo9I GATC 6 cut(s) 185, 637, 687, 880, 1078, 1111
Lsp1109I GCAGC 5 cut(s) 259, 262, 339, 391, 1062
LweI GCATC 4 cut(s) 129, 139, 379, 574
MaeI CTAG 7 cut(s) 153, 171, 183, 891, 936, 950, 1119
MaeII ACGT 1 cut(s) 536
MaeIII GTNAC 1 cut(s) 722
MalI GATC 6 cut(s) 187, 639, 689, 882, 1080, 1113
MboI GATC 6 cut(s) 185, 637, 687, 880, 1078, 1111
MboII GAAGA 4 cut(s) 407, 544, 588, 983
MflI RGATCY 2 cut(s) 185, 1111
MhlI GDGCHC 4 cut(s) 18, 63, 616, 1039
MlsI TGGCCA 1 cut(s) 262
MluNI TGGCCA 1 cut(s) 262
MlyI GAGTC 4 cut(s) 23, 53, 387, 577
MmeI TCCRAC 1 cut(s) 1045
Mox20I TGGCCA 1 cut(s) 262
MroXI GAANNNNTTC 1 cut(s) 364
MscI TGGCCA 1 cut(s) 262
MseI TTAA 3 cut(s) 134, 327, 539
MslI CAYNNNNRTG 1 cut(s) 1044
Msp20I TGGCCA 1 cut(s) 262
MspR9I CCNGG 1 cut(s) 77
MvaI CCWGG 1 cut(s) 77
MvnI CGCG 1 cut(s) 1001
MwoI GCNNNNNNNGC 4 cut(s) 86, 281, 290, 410
NdeI CATATG 1 cut(s) 265
NdeII GATC 6 cut(s) 185, 637, 687, 880, 1078, 1111
NheI GCTAGC 1 cut(s) 1118
NlaIII CATG 5 cut(s) 68, 133, 669, 722, 998
NlaIV GGNNCC 3 cut(s) 120, 613, 1113
PagI TCATGA 1 cut(s) 994
PdmI GAANNNNTTC 1 cut(s) 364
PfeI GAWTC 1 cut(s) 826
PflMI CCANNNNNTGG 1 cut(s) 521
PkrI GCNGC 5 cut(s) 274, 277, 354, 406, 1052
PleI GAGTC 4 cut(s) 23, 52, 386, 577
PpsI GAGTC 4 cut(s) 23, 52, 386, 577
PshAI GACNNNNGTC 1 cut(s) 124
PsiI TTATAA 1 cut(s) 707
Psp6I CCWGG 1 cut(s) 75
PspEI GGTNACC 1 cut(s) 722
PspFI CCCAGC 2 cut(s) 867, 1093
PspGI CCWGG 1 cut(s) 75
PspN4I GGNNCC 3 cut(s) 120, 613, 1113
PspPI GGNCC 2 cut(s) 119, 126
PsuI RGATCY 2 cut(s) 185, 1111
RsaI GTAC 2 cut(s) 109, 851
RsaNI GTAC 2 cut(s) 108, 850
RseI CAYNNNNRTG 1 cut(s) 1044
SaqAI TTAA 3 cut(s) 134, 327, 539
SatI GCNGC 5 cut(s) 273, 276, 353, 405, 1051
Sau3AI GATC 6 cut(s) 185, 637, 687, 880, 1078, 1111
Sau96I GGNCC 2 cut(s) 119, 126
ScaI AGTACT 1 cut(s) 851
SchI GAGTC 4 cut(s) 23, 53, 387, 577
ScrFI CCNGG 1 cut(s) 77
SduI GDGCHC 4 cut(s) 18, 63, 616, 1039
SfaNI GCATC 4 cut(s) 129, 139, 379, 574
SfcI CTRYAG 2 cut(s) 202, 279
SinI GGWCC 2 cut(s) 119, 126
SmiMI CAYNNNNRTG 1 cut(s) 1044
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
SsiI CCGC 3 cut(s) 40, 252, 544
SspMI CTAG 7 cut(s) 153, 171, 183, 891, 936, 950, 1119
StyD4I CCNGG 1 cut(s) 75
StyI CCWWGG 2 cut(s) 114, 607
TaaI ACNGT 3 cut(s) 193, 320, 712
TaiI ACGT 1 cut(s) 539
TaqII GACCGA 1 cut(s) 136
TatI WGTACW 1 cut(s) 849
TfiI GAWTC 1 cut(s) 826
Tru1I TTAA 3 cut(s) 134, 327, 539
Tru9I TTAA 3 cut(s) 134, 327, 539
TscAI CASTG 1 cut(s) 196
TseI GCWGC 5 cut(s) 272, 275, 352, 404, 1050
TspDTI ATGAA 3 cut(s) 282, 654, 983
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 1 cut(s) 196
Van91I CCANNNNNTGG 1 cut(s) 521
VneI GTGCAC 1 cut(s) 59
VpaK11BI GGWCC 2 cut(s) 119, 126
XapI RAATTY 3 cut(s) 364, 547, 974
XbaI TCTAGA 1 cut(s) 182
XmnI GAANNNNTTC 1 cut(s) 364
XspI CTAG 7 cut(s) 153, 171, 183, 891, 936, 950, 1119
ZrmI AGTACT 1 cut(s) 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.