Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002546

Physical Location & Seq

Genomic Coordinates Forward (+)

42048055 .. 42065675

Gene Structure 17621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG357200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGGTATCAGCCTATCAGGGGAAGAAGGTAATACTTGCAGTCCACTTCTTTGTTTACCACCTGGAATCCTGGATATAGCTCACCGCAACAAAGACTACTGGTTTATGGACTTTCTTGGGCTGTTGTGGTATCTGTCCTTTCTCATCTTTAAGATGGTTTCTATGCGGAGACGAAGATTTTACACCAACTTTCAGCTCAAGTTCAGGATACTGAAGTTGCTTCTTTTTCTTGGCTACATGTCAATCAGGAGCGTCTTGTTTGTATTTTGTGATCTCACTATTTCAGATCTATTTGCTGCTATGCTTGCTTTCTTTCCCACAGGGTGGGCCCCTCTTCAGATAGGACAAGCAATTGGTGCATTATCAGATCAAATTAGCTTGTCAAATTTCAGAAATAAGACGGGCTTTGCTATGACAGTATCCAATTATCGCGAAGTGTTAAGGAACGCGGACAATAAGAAATGGCAAGCTAGATTAGGGAAAGGCATATACATCAATAGCATTTACATGGAAACATTTGATGCTGAAGAGGAAGCTGCCAGAGCTTATGATATTGCAATGATAAGGGTGAGAGGTAGGAGTGCGTTCCCCAATTTTGATATAAGTCTATATGATGGCCAAGCCATTCTGGATAGCACAACCTTTCCAATAAAAGGTGTTTTGAAGATGTTAAAGCGGAATTCAGTTGATGATGTGCATCAAAAGAGAAGAAAGACTCGCAATGTCTCCAGCTCAACCCTTGGTGCCCCACCATCACTTCACCCAATAGATCAAACTCAAACAACAACAATCAATTCATGCCTTCAGTATCAATTTTTGATCCCTTCCCTCCAAGTTACTGTCCCTCATGGTTACCAAAACCCTAACTCTGAAGCAAACCGAAGTTTCAATCCTCAGTATGACTATGGTGGAAGTGAGCCAACAGCCCAGTTTCAACCTATCATACCCTTACTGAATCAAGAGTTTCCATCTCACCAGTACTCTAACGGCAGTTCCCAGCACCACCTTGATCAAGCCCCTAGCTCTCAATTCCTTCAAGACACTCAGAACCCTAATCTTGTTGCTAGGTTGAACAACCTAGCAAGTGAAAGCTGTATGGAAGAATTTTCCAGCAGTCAGGTTCATGACGCGAGTTTCAAGATGATGGGGACGAGCGAGGGTGGTGCTCATAGTGATGGCCGGCAGCAATCAAGTAGTTGGAAATCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010449 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0035266 GO:0040007 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098727 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

403

Amino Acids

45.6

Weight (kDa)

8.49

Isoelectric Point (pI)

53.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23031
malus_domestica	MD17G1047700.v1.1
prunus_persica	Prupe.7G069100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480851 RchiOBHm_Chr3g0480891
rosa_laevigata	RLG00000023444 RLG00000023445 RLG00000023447 RLG00000034573
rosa_multiflora	Rmu_sc0004058.1_g000024 Rmu_sc0004838.1_g000011 Rmu_sc0006028.1_g000028 Rmu_sc0012984.1_g000002 Rmu_sc0012984.1_g000013
rosa_roxburghii	Rroxscaffold_1G00032960 Rroxscaffold_6G00400920 Rroxscaffold_6G00400960
rosa_rugosa	Rorug03G0186900 Rorug03G0187000 Rorug03G0187000 Rorug03G0187200 Rorug03G0187300 Rorug05G0241400
rosa_samantha	Rh3AG238500 Rh3AG238600 Rh3BG272000 Rh3BG272500 Rh3BG272700 Rh3BG272800 Rh3CG267800 Rh3CG268300 Rh3DG264100 Rh3DG264400 Rh5AG321600 Rh5BG331900 Rh5CG357200 Rh5DG343700
rosa_wichuraiana	Rw0G006160 Rw3G021350 Rw3G021360 Rw5G030350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	743
AccB7I	CCANNNNNTGG	1 cut(s)	324
AccII	CGCG	3 cut(s)	432, 449, 1130
AciI	CCGC	4 cut(s)	85, 166, 449, 676
AclWI	GGATC	1 cut(s)	814
AcoI	YGGCCR	2 cut(s)	616, 1177
AcsI	RAATTY	3 cut(s)	385, 679, 1103
AcuI	CTGAAG	5 cut(s)	233, 320, 546, 788, 891
AdeI	CACNNNGTG	1 cut(s)	324
AfaI	GTAC	1 cut(s)	980
AfiI	CCNNNNNNNGG	3 cut(s)	19, 324, 653
AflIII	ACRYGT	1 cut(s)	237
AgsI	TTSAA	6 cut(s)	664, 889, 935, 1037, 1072, 1138
AjnI	CCWGG	2 cut(s)	61, 69
AluBI	AGCT	9 cut(s)	80, 196, 378, 470, 536, 545, 732, 1023, 1092
AluI	AGCT	9 cut(s)	80, 196, 378, 470, 536, 545, 732, 1023, 1092
Alw21I	GWGCWC	1 cut(s)	1168
Alw26I	GTCTC	2 cut(s)	163, 730
AlwI	GGATC	1 cut(s)	814
AoxI	GGCC	3 cut(s)	327, 616, 1177
ApaI	GGGCCC	1 cut(s)	331
ApeKI	GCWGC	3 cut(s)	296, 536, 1183
ApoI	RAATTY	3 cut(s)	385, 679, 1103
AspS9I	GGNCC	2 cut(s)	327, 328
AsuHPI	GGTGA	4 cut(s)	74, 580, 752, 965
BaeGI	GKGCMC	2 cut(s)	331, 748
BaeI	ACNNNNGTAYC	2 cut(s)	200, 233
BalI	TGGCCA	1 cut(s)	618
BanI	GGYRCC	1 cut(s)	743
BanII	GRGCYC	1 cut(s)	331
Bbv12I	GWGCWC	1 cut(s)	1168
BbvI	GCAGC	3 cut(s)	283, 523, 1195
BccI	CCATC	6 cut(s)	148, 608, 760, 976, 1138, 1169
BceAI	ACGGC	1 cut(s)	1003
BcgI	CGANNNNNNTGC	2 cut(s)	1145, 1179
BciT130I	CCWGG	2 cut(s)	63, 71
BciVI	GTATCC	2 cut(s)	201, 430
BclI	TGATCA	1 cut(s)	1009
BcoDI	GTCTC	2 cut(s)	163, 730
BfaI	CTAG	4 cut(s)	471, 1020, 1065, 1079
BfuI	GTATCC	2 cut(s)	201, 430
BglII	AGATCT	1 cut(s)	286
BisI	GCNGC	3 cut(s)	297, 537, 1184
BlsI	GCNGC	3 cut(s)	298, 538, 1185
BmcAI	AGTACT	1 cut(s)	980
Bme1390I	CCNGG	2 cut(s)	63, 71
BmgT120I	GGNCC	2 cut(s)	327, 328
BmiI	GGNNCC	3 cut(s)	329, 330, 745
BmrFI	CCNGG	2 cut(s)	63, 71
BmrI	ACTGGG	1 cut(s)	922
BmsI	GCATC	2 cut(s)	511, 706
BmuI	ACTGGG	1 cut(s)	922
BpmI	CTGGAG	1 cut(s)	712
BpuEI	CTTGAG	1 cut(s)	182
BsaBI	GATNNNNATC	1 cut(s)	696
BsaJI	CCNNGG	1 cut(s)	739
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 324, 653
Bse118I	RCCGGY	1 cut(s)	1179
Bse1I	ACTGG	3 cut(s)	104, 928, 976
Bse3DI	GCAATG	2 cut(s)	564, 727
Bse8I	GATNNNNATC	1 cut(s)	696
BseBI	CCWGG	2 cut(s)	63, 71
BseDI	CCNNGG	1 cut(s)	739
BseJI	GATNNNNATC	1 cut(s)	696
BseLI	CCNNNNNNNGG	3 cut(s)	19, 324, 653
BseMI	GCAATG	2 cut(s)	564, 727
BseMII	CTCAG	2 cut(s)	908, 1058
BseNI	ACTGG	3 cut(s)	104, 928, 976
BseSI	GKGCMC	2 cut(s)	331, 748
BseXI	GCAGC	3 cut(s)	283, 523, 1195
BseYI	CCCAGC	1 cut(s)	996
Bsh1236I	CGCG	3 cut(s)	432, 449, 1130
BshFI	GGCC	3 cut(s)	329, 618, 1179
BshNI	GGYRCC	1 cut(s)	743
BsiHKAI	GWGCWC	1 cut(s)	1168
BsiSI	CCGG	1 cut(s)	1180
BslFI	GGGAC	2 cut(s)	827, 1162
BslI	CCNNNNNNNGG	3 cut(s)	19, 324, 653
BsmAI	GTCTC	2 cut(s)	163, 730
BsmBI	CGTCTC	1 cut(s)	163
BsmFI	GGGAC	2 cut(s)	827, 1162
BsnI	GGCC	3 cut(s)	329, 618, 1179
Bsp120I	GGGCCC	1 cut(s)	327
Bsp1286I	GDGCHC	3 cut(s)	331, 748, 1168
Bsp143I	GATC	6 cut(s)	271, 286, 367, 769, 819, 1009
Bsp68I	TCGCGA	1 cut(s)	432
BspACI	CCGC	4 cut(s)	85, 166, 449, 676
BspANI	GGCC	3 cut(s)	329, 618, 1179
BspCNI	CTCAG	2 cut(s)	907, 1057
BspFNI	CGCG	3 cut(s)	432, 449, 1130
BspHI	TCATGA	1 cut(s)	1123
BspLI	GGNNCC	3 cut(s)	329, 330, 745
BspPI	GGATC	1 cut(s)	814
BspT107I	GGYRCC	1 cut(s)	743
BsrDI	GCAATG	2 cut(s)	564, 727
BsrFI	RCCGGY	1 cut(s)	1179
BsrI	ACTGG	3 cut(s)	104, 928, 976
BssAI	RCCGGY	1 cut(s)	1179
BssECI	CCNNGG	1 cut(s)	739
BssMI	GATC	6 cut(s)	271, 286, 367, 769, 819, 1009
BssT1I	CCWWGG	1 cut(s)	739
Bst2UI	CCWGG	2 cut(s)	63, 71
Bst4CI	ACNGT	2 cut(s)	418, 841
Bst6I	CTCTTC	2 cut(s)	339, 522
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstC8I	GCNNGC	3 cut(s)	306, 468, 1181
BstDEI	CTNAG	2 cut(s)	894, 1044
BstEII	GGTNACC	1 cut(s)	851
BstFNI	CGCG	3 cut(s)	432, 449, 1130
BstKTI	GATC	6 cut(s)	274, 289, 370, 772, 822, 1012
BstMAI	GTCTC	2 cut(s)	163, 730
BstMBI	GATC	6 cut(s)	271, 286, 367, 769, 819, 1009
BstMWI	GCNNNNNNNGC	3 cut(s)	305, 356, 542
BstNI	CCWGG	2 cut(s)	63, 71
BstNSI	RCATGY	1 cut(s)	241
BstPI	GGTNACC	1 cut(s)	851
BstSCI	CCNGG	2 cut(s)	61, 69
BstSLI	GKGCMC	2 cut(s)	331, 748
BstUI	CGCG	3 cut(s)	432, 449, 1130
BstV1I	GCAGC	3 cut(s)	283, 523, 1195
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BsuI	GTATCC	2 cut(s)	201, 430
BsuRI	GGCC	3 cut(s)	329, 618, 1179
BtuMI	TCGCGA	1 cut(s)	432
Cac8I	GCNNGC	3 cut(s)	306, 468, 1181
CciI	TCATGA	1 cut(s)	1123
Cfr10I	RCCGGY	1 cut(s)	1179
Cfr13I	GGNCC	2 cut(s)	327, 328
CseI	GACGC	2 cut(s)	241, 1136
Csp6I	GTAC	1 cut(s)	979
CviAII	CATG	5 cut(s)	238, 508, 798, 848, 1124
CviQI	GTAC	1 cut(s)	979
DdeI	CTNAG	2 cut(s)	894, 1044
DpnI	GATC	6 cut(s)	273, 288, 369, 771, 821, 1011
DpnII	GATC	6 cut(s)	271, 286, 367, 769, 819, 1009
DraIII	CACNNNGTG	1 cut(s)	324
EaeI	YGGCCR	2 cut(s)	616, 1177
Eam1104I	CTCTTC	2 cut(s)	339, 522
EarI	CTCTTC	2 cut(s)	339, 522
Eco130I	CCWWGG	1 cut(s)	739
Eco24I	GRGCYC	1 cut(s)	331
Eco57I	CTGAAG	5 cut(s)	233, 320, 546, 788, 891
Eco91I	GGTNACC	1 cut(s)	851
EcoO109I	RGGNCCY	1 cut(s)	328
EcoO65I	GGTNACC	1 cut(s)	851
EcoRI	GAATTC	1 cut(s)	679
EcoRII	CCWGG	2 cut(s)	61, 69
EcoT14I	CCWWGG	1 cut(s)	739
EcoT38I	GRGCYC	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	739
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	5 cut(s)	241, 511, 801, 851, 1127
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FaqI	GGGAC	2 cut(s)	827, 1162
FatI	CATG	5 cut(s)	237, 507, 797, 847, 1123
FbaI	TGATCA	1 cut(s)	1009
Fnu4HI	GCNGC	3 cut(s)	297, 537, 1184
FriOI	GRGCYC	1 cut(s)	331
Fsp4HI	GCNGC	3 cut(s)	297, 537, 1184
FspBI	CTAG	4 cut(s)	471, 1020, 1065, 1079
GluI	GCNGC	3 cut(s)	297, 537, 1184
GsaI	CCCAGC	1 cut(s)	1000
GsuI	CTGGAG	1 cut(s)	712
HaeIII	GGCC	3 cut(s)	329, 618, 1179
HapII	CCGG	1 cut(s)	1180
HgaI	GACGC	2 cut(s)	241, 1136
Hin1II	CATG	5 cut(s)	241, 511, 801, 851, 1127
HinfI	GANTC	3 cut(s)	66, 715, 955
HpaII	CCGG	1 cut(s)	1180
HphI	GGTGA	4 cut(s)	74, 580, 752, 965
Hpy166II	GTNNAC	2 cut(s)	44, 56
Hpy188I	TCNGA	6 cut(s)	286, 339, 367, 392, 871, 1047
Hpy188III	TCNNGA	8 cut(s)	205, 247, 431, 629, 959, 1037, 1124, 1138
Hpy8I	GTNNAC	2 cut(s)	44, 56
HpyAV	CCTTC	4 cut(s)	20, 812, 834, 1043
HpyCH4III	ACNGT	2 cut(s)	418, 841
HpyCH4V	TGCA	4 cut(s)	39, 359, 557, 697
HpyF10VI	GCNNNNNNNGC	3 cut(s)	305, 356, 542
HpyF3I	CTNAG	2 cut(s)	894, 1044
Hsp92II	CATG	5 cut(s)	241, 511, 801, 851, 1127
KroI	GCCGGC	1 cut(s)	1179
KroNI	GCCGGC	1 cut(s)	1181
Ksp22I	TGATCA	1 cut(s)	1009
Kzo9I	GATC	6 cut(s)	271, 286, 367, 769, 819, 1009
LmnI	GCTCC	1 cut(s)	249
Lsp1109I	GCAGC	3 cut(s)	283, 523, 1195
LweI	GCATC	2 cut(s)	511, 706
MaeI	CTAG	4 cut(s)	471, 1020, 1065, 1079
MaeIII	GTNAC	2 cut(s)	835, 851
MalI	GATC	6 cut(s)	273, 288, 369, 771, 821, 1011
MboI	GATC	6 cut(s)	271, 286, 367, 769, 819, 1009
MboII	GAAGA	7 cut(s)	35, 186, 326, 539, 676, 720, 1112
MfeI	CAATTG	1 cut(s)	351
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	3 cut(s)	331, 748, 1168
MlsI	TGGCCA	1 cut(s)	618
MluNI	TGGCCA	1 cut(s)	618
MlyI	GAGTC	1 cut(s)	709
MmeI	TCCRAC	1 cut(s)	1178
MnlI	CCTC	7 cut(s)	342, 523, 566, 839, 855, 903, 1150
Mox20I	TGGCCA	1 cut(s)	618
MroNI	GCCGGC	1 cut(s)	1179
MscI	TGGCCA	1 cut(s)	618
MseI	TTAA	3 cut(s)	150, 440, 671
MslI	CAYNNNNRTG	2 cut(s)	506, 1173
Msp20I	TGGCCA	1 cut(s)	618
MspI	CCGG	1 cut(s)	1180
MspR9I	CCNGG	2 cut(s)	63, 71
MunI	CAATTG	1 cut(s)	351
MvaI	CCWGG	2 cut(s)	63, 71
MvnI	CGCG	3 cut(s)	432, 449, 1130
MwoI	GCNNNNNNNGC	3 cut(s)	305, 356, 542
NaeI	GCCGGC	1 cut(s)	1181
NdeII	GATC	6 cut(s)	271, 286, 367, 769, 819, 1009
NgoMIV	GCCGGC	1 cut(s)	1179
NlaIII	CATG	5 cut(s)	241, 511, 801, 851, 1127
NlaIV	GGNNCC	3 cut(s)	329, 330, 745
NruI	TCGCGA	1 cut(s)	432
NspI	RCATGY	1 cut(s)	241
PagI	TCATGA	1 cut(s)	1123
PciI	ACATGT	1 cut(s)	237
PdiI	GCCGGC	1 cut(s)	1181
PfeI	GAWTC	2 cut(s)	66, 955
PflMI	CCANNNNNTGG	1 cut(s)	324
PfoI	TCCNGGA	1 cut(s)	69
PkrI	GCNGC	3 cut(s)	298, 538, 1185
PleI	GAGTC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	709
PscI	ACATGT	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	61, 69
PspEI	GGTNACC	1 cut(s)	851
PspFI	CCCAGC	1 cut(s)	996
PspGI	CCWGG	2 cut(s)	61, 69
PspN4I	GGNNCC	3 cut(s)	329, 330, 745
PspOMI	GGGCCC	1 cut(s)	327
PspPI	GGNCC	2 cut(s)	327, 328
PsuI	RGATCY	1 cut(s)	286
RruI	TCGCGA	1 cut(s)	432
RsaI	GTAC	1 cut(s)	980
RsaNI	GTAC	1 cut(s)	979
RseI	CAYNNNNRTG	2 cut(s)	506, 1173
SaqAI	TTAA	3 cut(s)	150, 440, 671
SatI	GCNGC	3 cut(s)	297, 537, 1184
Sau3AI	GATC	6 cut(s)	271, 286, 367, 769, 819, 1009
Sau96I	GGNCC	2 cut(s)	327, 328
ScaI	AGTACT	1 cut(s)	980
SchI	GAGTC	1 cut(s)	709
ScrFI	CCNGG	2 cut(s)	63, 71
SduI	GDGCHC	3 cut(s)	331, 748, 1168
SfaNI	GCATC	2 cut(s)	511, 706
SmiMI	CAYNNNNRTG	2 cut(s)	506, 1173
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SsiI	CCGC	4 cut(s)	85, 166, 449, 676
SspMI	CTAG	4 cut(s)	471, 1020, 1065, 1079
StyD4I	CCNGG	2 cut(s)	61, 69
StyI	CCWWGG	1 cut(s)	739
TaaI	ACNGT	2 cut(s)	418, 841
TatI	WGTACW	1 cut(s)	978
TfiI	GAWTC	2 cut(s)	66, 955
Tru1I	TTAA	3 cut(s)	150, 440, 671
Tru9I	TTAA	3 cut(s)	150, 440, 671
TseI	GCWGC	3 cut(s)	296, 536, 1183
TspDTI	ATGAA	2 cut(s)	786, 1112
Van91I	CCANNNNNTGG	1 cut(s)	324
XapI	RAATTY	3 cut(s)	385, 679, 1103
XceI	RCATGY	1 cut(s)	241
XspI	CTAG	4 cut(s)	471, 1020, 1065, 1079
ZrmI	AGTACT	1 cut(s)	980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.