Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002546

Physical Location & Seq

Genomic Coordinates Reverse (-)

47378120 .. 47378821

Gene Structure 702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00032960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGATAAGGGTGAGAGGTAGGAGTGCGTTCCCCAATTTTGATGTAAGTCTATATGATGTCCAAGCCATTCTGGATAGCACCACCTTTCCAATAAAAGGTGCTTTGAAGATGTTAAAGCGGAATTCAGTTGATGAAGTGCATCAAAAGAGAAGAAAGACTCGCAATGTCTCCAGCTCAACCCTTGGTGCCCCACCATCACTTCACCCAATAGATCAAACTCAAACAACAACAATCAATTCATGCCTTCAGTGTCAATTTCTGATCCCTTCCCTCCAAGTTACTGTCCCTCATGGTTACCAAAACCCTACCTCTGAAGCAAACCGAAGTTTCAATCCTCAGTATGACTATGGTGGAAGTGAGCCAACAGCCCAGTTTCAACCTATCGTACCCTTACTGAATCAAGAGTTTCCATCTCACCAGTACTCTAACGGCAGTTTCCAGCACCACCTTGATCAAGCCCCTAGCTCTCAATTCCTTCAAGACACTCAGAACCCTAATCTTGTTGCTAGGTTAAACAACCTAGCAAGTGAAAGTTGTATGGAAGAAGTTTCCAGCAGTCAGTCTCATGACGCGAGTTTCAAGATGATTGGGACGAACGAGGGTGGTGCTCATAGTGATGGCAGCAATCAAGTAGTTGGAAATCTTGGTGATCCTGAGGTTGGGCTGGGCAATTCTGACTTGGATCCAGCTAGCTGGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010449 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0035266 GO:0040007 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098727 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

233

Amino Acids

25.51

Weight (kDa)

5.53

Isoelectric Point (pI)

50.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23031
malus_domestica	MD17G1047700.v1.1
prunus_persica	Prupe.7G069100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480851 RchiOBHm_Chr3g0480891
rosa_laevigata	RLG00000023444 RLG00000023445 RLG00000023447 RLG00000034573
rosa_multiflora	Rmu_sc0004058.1_g000024 Rmu_sc0004838.1_g000011 Rmu_sc0006028.1_g000028 Rmu_sc0012984.1_g000002 Rmu_sc0012984.1_g000013
rosa_roxburghii	Rroxscaffold_1G00032960 Rroxscaffold_6G00400920 Rroxscaffold_6G00400960
rosa_rugosa	Rorug03G0186900 Rorug03G0187000 Rorug03G0187000 Rorug03G0187200 Rorug03G0187300 Rorug05G0241400
rosa_samantha	Rh3AG238500 Rh3AG238600 Rh3BG272000 Rh3BG272500 Rh3BG272700 Rh3BG272800 Rh3CG267800 Rh3CG268300 Rh3DG264100 Rh3DG264400 Rh5AG321600 Rh5BG331900 Rh5CG357200 Rh5DG343700
rosa_wichuraiana	Rw0G006160 Rw3G021350 Rw3G021360 Rw5G030350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	185
AccII	CGCG	1 cut(s)	572
AciI	CCGC	1 cut(s)	118
AclWI	GGATC	4 cut(s)	256, 644, 677, 690
AcsI	RAATTY	1 cut(s)	121
AcuI	CTGAAG	2 cut(s)	230, 333
AfaI	GTAC	2 cut(s)	387, 422
AfiI	CCNNNNNNNGG	2 cut(s)	95, 659
AgsI	TTSAA	5 cut(s)	106, 331, 377, 479, 580
AluBI	AGCT	4 cut(s)	174, 465, 689, 693
AluI	AGCT	4 cut(s)	174, 465, 689, 693
Alw21I	GWGCWC	1 cut(s)	610
Alw26I	GTCTC	2 cut(s)	172, 567
AlwI	GGATC	4 cut(s)	256, 644, 677, 690
ApeKI	GCWGC	1 cut(s)	621
ApoI	RAATTY	1 cut(s)	121
AsuHPI	GGTGA	4 cut(s)	22, 194, 407, 659
AsuNHI	GCTAGC	1 cut(s)	689
AxyI	CCTNAGG	1 cut(s)	654
BaeGI	GKGCMC	1 cut(s)	190
BamHI	GGATCC	1 cut(s)	682
BanI	GGYRCC	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	610
BbvI	GCAGC	1 cut(s)	633
BccI	CCATC	3 cut(s)	202, 418, 611
BceAI	ACGGC	1 cut(s)	445
BcgI	CGANNNNNNTGC	2 cut(s)	587, 621
BclI	TGATCA	1 cut(s)	451
BcoDI	GTCTC	2 cut(s)	172, 567
BfaI	CTAG	4 cut(s)	462, 507, 521, 690
BisI	GCNGC	1 cut(s)	622
BlsI	GCNGC	1 cut(s)	623
BmcAI	AGTACT	1 cut(s)	422
BmiI	GGNNCC	2 cut(s)	187, 684
BmrI	ACTGGG	1 cut(s)	364
BmsI	GCATC	1 cut(s)	148
BmtI	GCTAGC	1 cut(s)	693
BmuI	ACTGGG	1 cut(s)	364
BpmI	CTGGAG	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 659
Bse1I	ACTGG	2 cut(s)	370, 418
Bse21I	CCTNAGG	1 cut(s)	654
Bse3DI	GCAATG	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	181
BseLI	CCNNNNNNNGG	2 cut(s)	95, 659
BseMI	GCAATG	1 cut(s)	169
BseMII	CTCAG	3 cut(s)	350, 500, 645
BseNI	ACTGG	2 cut(s)	370, 418
BseSI	GKGCMC	1 cut(s)	190
BseXI	GCAGC	1 cut(s)	633
BseYI	CCCAGC	1 cut(s)	664
Bsh1236I	CGCG	1 cut(s)	572
BshNI	GGYRCC	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	610
BslFI	GGGAC	2 cut(s)	269, 604
BslI	CCNNNNNNNGG	2 cut(s)	95, 659
BsmAI	GTCTC	2 cut(s)	172, 567
BsmFI	GGGAC	2 cut(s)	269, 604
Bsp1286I	GDGCHC	2 cut(s)	190, 610
Bsp143I	GATC	5 cut(s)	211, 261, 451, 649, 682
BspACI	CCGC	1 cut(s)	118
BspCNI	CTCAG	3 cut(s)	349, 499, 646
BspFNI	CGCG	1 cut(s)	572
BspHI	TCATGA	1 cut(s)	565
BspLI	GGNNCC	2 cut(s)	187, 684
BspOI	GCTAGC	1 cut(s)	693
BspPI	GGATC	4 cut(s)	256, 644, 677, 690
BspT107I	GGYRCC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	169
BsrI	ACTGG	2 cut(s)	370, 418
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	5 cut(s)	211, 261, 451, 649, 682
BssT1I	CCWWGG	1 cut(s)	181
Bst4CI	ACNGT	1 cut(s)	283
BstC8I	GCNNGC	2 cut(s)	691, 695
BstDEI	CTNAG	3 cut(s)	336, 486, 654
BstEII	GGTNACC	1 cut(s)	293
BstFNI	CGCG	1 cut(s)	572
BstKTI	GATC	5 cut(s)	214, 264, 454, 652, 685
BstMAI	GTCTC	2 cut(s)	172, 567
BstMBI	GATC	5 cut(s)	211, 261, 451, 649, 682
BstPI	GGTNACC	1 cut(s)	293
BstSLI	GKGCMC	1 cut(s)	190
BstUI	CGCG	1 cut(s)	572
BstV1I	GCAGC	1 cut(s)	633
BstX2I	RGATCY	1 cut(s)	682
BstXI	CCANNNNNNTGG	1 cut(s)	693
BstYI	RGATCY	1 cut(s)	682
Bsu36I	CCTNAGG	1 cut(s)	654
BtsIMutI	CAGTG	1 cut(s)	254
Cac8I	GCNNGC	2 cut(s)	691, 695
CciI	TCATGA	1 cut(s)	565
CseI	GACGC	1 cut(s)	578
Csp6I	GTAC	2 cut(s)	386, 421
CviAII	CATG	3 cut(s)	240, 290, 566
CviQI	GTAC	2 cut(s)	386, 421
DdeI	CTNAG	3 cut(s)	336, 486, 654
DpnI	GATC	5 cut(s)	213, 263, 453, 651, 684
DpnII	GATC	5 cut(s)	211, 261, 451, 649, 682
Eco130I	CCWWGG	1 cut(s)	181
Eco57I	CTGAAG	2 cut(s)	230, 333
Eco81I	CCTNAGG	1 cut(s)	654
Eco91I	GGTNACC	1 cut(s)	293
EcoO65I	GGTNACC	1 cut(s)	293
EcoRI	GAATTC	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	181
FaeI	CATG	3 cut(s)	243, 293, 569
FaiI	YATR	9 cut(s)	52, 54, 241, 291, 342, 348, 539, 567, 612
FaqI	GGGAC	2 cut(s)	269, 604
FatI	CATG	3 cut(s)	239, 289, 565
FbaI	TGATCA	1 cut(s)	451
Fnu4HI	GCNGC	1 cut(s)	622
Fsp4HI	GCNGC	1 cut(s)	622
FspBI	CTAG	4 cut(s)	462, 507, 521, 690
GluI	GCNGC	1 cut(s)	622
GsaI	CCCAGC	1 cut(s)	668
GsuI	CTGGAG	1 cut(s)	154
HgaI	GACGC	1 cut(s)	578
Hin1II	CATG	3 cut(s)	243, 293, 569
HinfI	GANTC	2 cut(s)	157, 397
HphI	GGTGA	4 cut(s)	22, 194, 407, 659
Hpy188I	TCNGA	4 cut(s)	261, 313, 489, 676
Hpy188III	TCNNGA	6 cut(s)	71, 401, 479, 566, 580, 653
HpyAV	CCTTC	3 cut(s)	254, 276, 485
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4V	TGCA	1 cut(s)	139
HpyF3I	CTNAG	3 cut(s)	336, 486, 654
Hsp92II	CATG	3 cut(s)	243, 293, 569
Ksp22I	TGATCA	1 cut(s)	451
Kzo9I	GATC	5 cut(s)	211, 261, 451, 649, 682
LpnPI	CCDG	9 cut(s)	56, 184, 383, 431, 452, 565, 650, 666, 679
Lsp1109I	GCAGC	1 cut(s)	633
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	4 cut(s)	462, 507, 521, 690
MaeIII	GTNAC	2 cut(s)	277, 293
MalI	GATC	5 cut(s)	213, 263, 453, 651, 684
MboI	GATC	5 cut(s)	211, 261, 451, 649, 682
MboII	GAAGA	3 cut(s)	118, 162, 554
MflI	RGATCY	1 cut(s)	682
MhlI	GDGCHC	2 cut(s)	190, 610
MluCI	AATT	6 cut(s)	34, 121, 235, 254, 470, 670
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	1 cut(s)	616
MnlI	CCTC	7 cut(s)	8, 281, 297, 319, 345, 592, 649
MseI	TTAA	2 cut(s)	113, 512
MslI	CAYNNNNRTG	1 cut(s)	615
MvnI	CGCG	1 cut(s)	572
NdeII	GATC	5 cut(s)	211, 261, 451, 649, 682
NheI	GCTAGC	1 cut(s)	689
NlaIII	CATG	3 cut(s)	243, 293, 569
NlaIV	GGNNCC	2 cut(s)	187, 684
PagI	TCATGA	1 cut(s)	565
PfeI	GAWTC	1 cut(s)	397
PkrI	GCNGC	1 cut(s)	623
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PspEI	GGTNACC	1 cut(s)	293
PspFI	CCCAGC	1 cut(s)	664
PspN4I	GGNNCC	2 cut(s)	187, 684
PsuI	RGATCY	1 cut(s)	682
RsaI	GTAC	2 cut(s)	387, 422
RsaNI	GTAC	2 cut(s)	386, 421
RseI	CAYNNNNRTG	1 cut(s)	615
SaqAI	TTAA	2 cut(s)	113, 512
SatI	GCNGC	1 cut(s)	622
Sau3AI	GATC	5 cut(s)	211, 261, 451, 649, 682
ScaI	AGTACT	1 cut(s)	422
SchI	GAGTC	1 cut(s)	151
SduI	GDGCHC	2 cut(s)	190, 610
SfaNI	GCATC	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	615
Sse9I	AATT	6 cut(s)	34, 121, 235, 254, 470, 670
SsiI	CCGC	1 cut(s)	118
SspMI	CTAG	4 cut(s)	462, 507, 521, 690
StyI	CCWWGG	1 cut(s)	181
TaaI	ACNGT	1 cut(s)	283
TasI	AATT	6 cut(s)	34, 121, 235, 254, 470, 670
TatI	WGTACW	1 cut(s)	420
TfiI	GAWTC	1 cut(s)	397
Tru1I	TTAA	2 cut(s)	113, 512
Tru9I	TTAA	2 cut(s)	113, 512
TscAI	CASTG	1 cut(s)	254
TseI	GCWGC	1 cut(s)	621
TspDTI	ATGAA	2 cut(s)	147, 228
TspRI	CASTG	1 cut(s)	254
XapI	RAATTY	1 cut(s)	121
XspI	CTAG	4 cut(s)	462, 507, 521, 690
ZrmI	AGTACT	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.