Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012984.1

Orthogroup ID

OG0002546

Physical Location & Seq

Genomic Coordinates Forward (+)

10721 .. 11840

Gene Structure 1120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012984.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atgttgattcttgccaaattccagaagcaagacgggtttagccaagacgataccgaagagcaagccgccgaagcatatgacgttgcagctataagggtgaaagggccgaaggcaatcaccaattttgataaaagtaactacgatgtcaaacagattcttgaaagcccaaaatttctaattaataaaggtgcatcgaagacgttgaagcgaagttcagttgatgatgtgcttcaaaagagaagaaagactcgcagtgactccagctcaacccctagtgccccaccatcacttcacccaatagatcaaactcaaccaacggtaatcgattcaagccttcaatatcaatttccgattccttacctccaagtcccagtccctcacggttaccaaaaccctatctttgaagcaaaccgaagtttcagtcctcagtatgactatggtggaagtgagccaatagcccagcttcaacctatcatacccttattgaatcaagagtttccatctcatcagtattgtaacagcaattcccagcaccaccttgatcaaacccctagctcccagttccttcaagacactcagaatcctaatcttgttgctgggttgaacaaccttgcaagtgatagctgtatggaagaattttccagcagtcaggttcttgaggcgagttccgagatgatgggaacgaacgagggtggcgctcatggtgatggtagcagtcatgtagttggaaatcttggtgatcctgtgtttgggctgggcaattctgacttggatcctgcgagctggctagaaacgttcttgaggatgagcccacaatgtcctaattctatggtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010449 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0035266 GO:0040007 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098727 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

278

Amino Acids

30.52

Weight (kDa)

4.84

Isoelectric Point (pI)

64.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23031
malus_domestica	MD17G1047700.v1.1
prunus_persica	Prupe.7G069100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480851 RchiOBHm_Chr3g0480891
rosa_laevigata	RLG00000023444 RLG00000023445 RLG00000023447 RLG00000034573
rosa_multiflora	Rmu_sc0004058.1_g000024 Rmu_sc0004838.1_g000011 Rmu_sc0006028.1_g000028 Rmu_sc0012984.1_g000002 Rmu_sc0012984.1_g000013
rosa_roxburghii	Rroxscaffold_1G00032960 Rroxscaffold_6G00400920 Rroxscaffold_6G00400960
rosa_rugosa	Rorug03G0186900 Rorug03G0187000 Rorug03G0187000 Rorug03G0187200 Rorug03G0187300 Rorug05G0241400
rosa_samantha	Rh3AG238500 Rh3AG238600 Rh3BG272000 Rh3BG272500 Rh3BG272700 Rh3BG272800 Rh3CG267800 Rh3CG268300 Rh3DG264100 Rh3DG264400 Rh5AG321600 Rh5BG331900 Rh5CG357200 Rh5DG343700
rosa_wichuraiana	Rw0G006160 Rw3G021350 Rw3G021360 Rw5G030350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	66
AclI	AACGTT	1 cut(s)	794
AclWI	GGATC	3 cut(s)	734, 767, 780
AcsI	RAATTY	3 cut(s)	17, 170, 635
AfiI	CCNNNNNNNGG	1 cut(s)	749
AluBI	AGCT	6 cut(s)	89, 264, 463, 555, 624, 783
AluI	AGCT	6 cut(s)	89, 264, 463, 555, 624, 783
AlwI	GGATC	3 cut(s)	734, 767, 780
AoxI	GGCC	1 cut(s)	104
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	3 cut(s)	17, 170, 635
ArsI	GACNNNNNNTTYG	2 cut(s)	406, 438
AseI	ATTAAT	1 cut(s)	180
AspLEI	GCGC	1 cut(s)	698
AspS9I	GGNCC	1 cut(s)	104
AsuHPI	GGTGA	5 cut(s)	109, 109, 284, 716, 749
BaeGI	GKGCMC	1 cut(s)	280
BamHI	GGATCC	1 cut(s)	772
BanII	GRGCYC	1 cut(s)	812
BbsI	GAAGAC	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	4 cut(s)	292, 508, 670, 701
BclI	TGATCA	1 cut(s)	541
BfaI	CTAG	3 cut(s)	273, 552, 788
BfoI	RGCGCY	1 cut(s)	699
BisI	GCNGC	2 cut(s)	66, 87
BlsI	GCNGC	2 cut(s)	67, 88
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	774
BmrI	ACTGGG	2 cut(s)	365, 553
BmsI	GCATC	1 cut(s)	200
BmuI	ACTGGG	2 cut(s)	365, 553
BpiI	GAAGAC	1 cut(s)	203
BpmI	CTGGAG	1 cut(s)	244
BpuEI	CTTGAG	2 cut(s)	677, 820
Bsa29I	ATCGAT	1 cut(s)	324
Bsc4I	CCNNNNNNNGG	1 cut(s)	749
Bse1I	ACTGG	2 cut(s)	371, 559
BseCI	ATCGAT	1 cut(s)	324
BseGI	GGATG	1 cut(s)	810
BseLI	CCNNNNNNNGG	1 cut(s)	749
BseMII	CTCAG	2 cut(s)	440, 590
BseNI	ACTGG	2 cut(s)	371, 559
BseSI	GKGCMC	1 cut(s)	280
BseXI	GCAGC	1 cut(s)	98
BseYI	CCCAGC	4 cut(s)	459, 528, 596, 754
BshFI	GGCC	1 cut(s)	106
BshVI	ATCGAT	1 cut(s)	324
BslFI	GGGAC	2 cut(s)	353, 359
BslI	CCNNNNNNNGG	1 cut(s)	749
BsmFI	GGGAC	2 cut(s)	353, 359
BsnI	GGCC	1 cut(s)	106
Bsp1286I	GDGCHC	2 cut(s)	280, 812
Bsp143I	GATC	4 cut(s)	301, 541, 739, 772
BspACI	CCGC	1 cut(s)	66
BspANI	GGCC	1 cut(s)	106
BspCNI	CTCAG	2 cut(s)	439, 589
BspDI	ATCGAT	1 cut(s)	324
BspLI	GGNNCC	1 cut(s)	774
BspPI	GGATC	3 cut(s)	734, 767, 780
BspQI	GCTCTTC	1 cut(s)	51
BsrI	ACTGG	2 cut(s)	371, 559
BssMI	GATC	4 cut(s)	301, 541, 739, 772
Bst4CI	ACNGT	2 cut(s)	319, 383
Bst6I	CTCTTC	1 cut(s)	51
BstC8I	GCNNGC	3 cut(s)	63, 781, 785
BstDEI	CTNAG	2 cut(s)	426, 576
BstEII	GGTNACC	1 cut(s)	383
BstF5I	GGATG	1 cut(s)	810
BstH2I	RGCGCY	1 cut(s)	699
BstHHI	GCGC	1 cut(s)	698
BstKTI	GATC	4 cut(s)	304, 544, 742, 775
BstMBI	GATC	4 cut(s)	301, 541, 739, 772
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstPI	GGTNACC	1 cut(s)	383
BstSLI	GKGCMC	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	98
BstV2I	GAAGAC	1 cut(s)	203
BstX2I	RGATCY	1 cut(s)	772
BstYI	RGATCY	1 cut(s)	772
Bsu15I	ATCGAT	1 cut(s)	324
BsuRI	GGCC	1 cut(s)	106
BsuTUI	ATCGAT	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	810
BtsI	GCAGTG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	259
Cac8I	GCNNGC	3 cut(s)	63, 781, 785
CfoI	GCGC	1 cut(s)	698
Cfr13I	GGNCC	1 cut(s)	104
ClaI	ATCGAT	1 cut(s)	324
CviAII	CATG	2 cut(s)	701, 719
DdeI	CTNAG	2 cut(s)	426, 576
DpnI	GATC	4 cut(s)	303, 543, 741, 774
DpnII	GATC	4 cut(s)	301, 541, 739, 772
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	812
Eco91I	GGTNACC	1 cut(s)	383
EcoO65I	GGTNACC	1 cut(s)	383
EcoT38I	GRGCYC	1 cut(s)	812
FaeI	CATG	2 cut(s)	704, 722
FaqI	GGGAC	2 cut(s)	353, 359
FatI	CATG	2 cut(s)	700, 718
FauNDI	CATATG	1 cut(s)	76
FbaI	TGATCA	1 cut(s)	541
Fnu4HI	GCNGC	2 cut(s)	66, 87
FokI	GGATG	1 cut(s)	817
FriOI	GRGCYC	1 cut(s)	812
Fsp4HI	GCNGC	2 cut(s)	66, 87
FspBI	CTAG	3 cut(s)	273, 552, 788
GlaI	GCGC	1 cut(s)	697
GluI	GCNGC	2 cut(s)	66, 87
GsaI	CCCAGC	4 cut(s)	463, 532, 600, 758
GsuI	CTGGAG	1 cut(s)	244
HaeII	RGCGCY	1 cut(s)	699
HaeIII	GGCC	1 cut(s)	106
HhaI	GCGC	1 cut(s)	698
Hin1II	CATG	2 cut(s)	704, 722
Hin6I	GCGC	1 cut(s)	696
HinP1I	GCGC	1 cut(s)	696
HinfI	GANTC	8 cut(s)	7, 154, 247, 257, 326, 352, 487, 580
HphI	GGTGA	5 cut(s)	109, 109, 284, 716, 749
Hpy188I	TCNGA	4 cut(s)	351, 579, 670, 766
Hpy188III	TCNNGA	6 cut(s)	22, 158, 491, 569, 656, 799
HpyAV	CCTTC	3 cut(s)	103, 344, 575
HpyCH4III	ACNGT	2 cut(s)	319, 383
HpyCH4IV	ACGT	3 cut(s)	81, 200, 794
HpyCH4V	TGCA	3 cut(s)	86, 191, 614
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	2 cut(s)	426, 576
HpySE526I	ACGT	3 cut(s)	81, 200, 794
Hsp92II	CATG	2 cut(s)	704, 722
HspAI	GCGC	1 cut(s)	696
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	4 cut(s)	301, 541, 739, 772
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	1 cut(s)	560
Lsp1109I	GCAGC	1 cut(s)	98
LweI	GCATC	1 cut(s)	200
MaeI	CTAG	3 cut(s)	273, 552, 788
MaeII	ACGT	3 cut(s)	81, 200, 794
MaeIII	GTNAC	4 cut(s)	134, 254, 383, 515
MalI	GATC	4 cut(s)	303, 543, 741, 774
MboI	GATC	4 cut(s)	301, 541, 739, 772
MboII	GAAGA	4 cut(s)	68, 208, 252, 644
MflI	RGATCY	1 cut(s)	772
MhlI	GDGCHC	2 cut(s)	280, 812
MluCI	AATT	9 cut(s)	17, 121, 170, 177, 344, 523, 635, 760, 823
MlyI	GAGTC	2 cut(s)	241, 251
MmeI	TCCRAC	1 cut(s)	706
MnlI	CCTC	6 cut(s)	371, 387, 435, 652, 682, 795
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	705
MwoI	GCNNNNNNNGC	1 cut(s)	71
NdeI	CATATG	1 cut(s)	76
NdeII	GATC	4 cut(s)	301, 541, 739, 772
NlaIII	CATG	2 cut(s)	704, 722
NlaIV	GGNNCC	1 cut(s)	774
NmuCI	GTSAC	1 cut(s)	254
PciSI	GCTCTTC	1 cut(s)	51
PfeI	GAWTC	6 cut(s)	7, 154, 326, 352, 487, 580
PkrI	GCNGC	2 cut(s)	67, 88
PleI	GAGTC	2 cut(s)	241, 251
PpsI	GAGTC	2 cut(s)	241, 251
PshBI	ATTAAT	1 cut(s)	180
Psp1406I	AACGTT	1 cut(s)	794
PspEI	GGTNACC	1 cut(s)	383
PspFI	CCCAGC	4 cut(s)	459, 528, 596, 754
PspN4I	GGNNCC	1 cut(s)	774
PspPI	GGNCC	1 cut(s)	104
PsuI	RGATCY	1 cut(s)	772
RseI	CAYNNNNRTG	1 cut(s)	705
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	2 cut(s)	66, 87
Sau3AI	GATC	4 cut(s)	301, 541, 739, 772
Sau96I	GGNCC	1 cut(s)	104
SchI	GAGTC	2 cut(s)	241, 251
SduI	GDGCHC	2 cut(s)	280, 812
SfaNI	GCATC	1 cut(s)	200
SmiMI	CAYNNNNRTG	1 cut(s)	705
SmlI	CTYRAG	2 cut(s)	656, 799
SmoI	CTYRAG	2 cut(s)	656, 799
Sse9I	AATT	9 cut(s)	17, 121, 170, 177, 344, 523, 635, 760, 823
SsiI	CCGC	1 cut(s)	66
SspMI	CTAG	3 cut(s)	273, 552, 788
TaaI	ACNGT	2 cut(s)	319, 383
TaiI	ACGT	3 cut(s)	84, 203, 797
TaqI	TCGA	2 cut(s)	194, 324
TasI	AATT	9 cut(s)	17, 121, 170, 177, 344, 523, 635, 760, 823
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	6 cut(s)	7, 154, 326, 352, 487, 580
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	254
TspRI	CASTG	1 cut(s)	259
VspI	ATTAAT	1 cut(s)	180
XapI	RAATTY	3 cut(s)	17, 170, 635
XspI	CTAG	3 cut(s)	273, 552, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.